Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:09:15 (240431): wrapper (7.7.26015): starting
20:09:15 (240431): wrapper: running run_atlas (--nthreads 4)
[2026-03-06 20:09:15] Arguments: --nthreads 4
[2026-03-06 20:09:15] Threads: 4
[2026-03-06 20:09:15] Checking for CVMFS
[2026-03-06 20:09:15] No cvmfs_config command found, will try listing directly
[2026-03-06 20:09:15] CVMFS is ok
[2026-03-06 20:09:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-06 20:09:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-06 20:09:15] Further information can be found at the LHC@home message board.
[2026-03-06 20:09:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-06 20:09:15] Checking for apptainer binary...
[2026-03-06 20:09:15] which: no apptainer in ((null))
[2026-03-06 20:09:15] apptainer is not installed, using version from CVMFS
[2026-03-06 20:09:15] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-06 20:09:16] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut03.grid.cesnet.cz
[2026-03-06 20:09:16] apptainer works
[2026-03-06 20:09:16] Set ATHENA_PROC_NUMBER=4
[2026-03-06 20:09:16] Set ATHENA_CORE_NUMBER=4
[2026-03-06 20:09:16] Starting ATLAS job with PandaID=7042734069
[2026-03-06 20:09:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-06 23:24:02]  *** The last 200 lines of the pilot log: ***
[2026-03-06 23:24:02] 2026-03-06 22:20:11,278 | INFO     | reading metadata from: /var/lib/boinc/var/slot40/slots/0/PanDA_Pilot-7042734069/jobReport.json
[2026-03-06 23:24:02] 2026-03-06 22:20:11,281 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot40/slots/0/workernode_map.json
[2026-03-06 23:24:02] 2026-03-06 22:20:11,281 | INFO     | this job has now completed (state=finished)
[2026-03-06 23:24:02] 2026-03-06 22:20:11,281 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-06 23:24:02] 2026-03-06 22:20:11,281 | INFO     | log transfer has been attempted: DONE
[2026-03-06 23:24:02] 2026-03-06 22:20:11,281 | INFO     | job 7042734069 has finished - writing final server update
[2026-03-06 23:24:02] 2026-03-06 22:20:11,282 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_38740/.job.ad'
[2026-03-06 23:24:02] 2026-03-06 22:20:11,282 | INFO     | total number of processed events: 400 (read)
[2026-03-06 23:24:02] 2026-03-06 22:20:11,294 | INFO     | using path: /var/lib/boinc/var/slot40/slots/0/PanDA_Pilot-7042734069/memory_monitor_summary.json (trf name=prmon)
[2026-03-06 23:24:02] 2026-03-06 22:20:11,294 | INFO     | extracted standard info from prmon json
[2026-03-06 23:24:02] 2026-03-06 22:20:11,294 | INFO     | extracted standard memory fields from prmon json
[2026-03-06 23:24:02] 2026-03-06 22:20:11,295 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-06 23:24:02] 2026-03-06 22:20:11,295 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-06 23:24:02] 2026-03-06 22:20:11,295 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-06 23:24:02] 2026-03-06 22:20:11,298 | INFO     | fitting pss+swap vs Time
[2026-03-06 23:24:02] 2026-03-06 22:20:11,299 | INFO     | sum of square deviations: 2027639878.0
[2026-03-06 23:24:02] 2026-03-06 22:20:11,300 | INFO     | sum of deviations: 18138391540.99999
[2026-03-06 23:24:02] 2026-03-06 22:20:11,300 | INFO     | mean x: 1772829875.0
[2026-03-06 23:24:02] 2026-03-06 22:20:11,300 | INFO     | mean y: 2331234.2994652404
[2026-03-06 23:24:02] 2026-03-06 22:20:11,300 | INFO     | intersect: -15856639955.421862
[2026-03-06 23:24:02] 2026-03-06 22:20:11,300 | INFO     | chi2: 1.1981014980707323
[2026-03-06 23:24:02] 2026-03-06 22:20:11,301 | INFO     | sum of square deviations: 1869302025.5
[2026-03-06 23:24:02] 2026-03-06 22:20:11,302 | INFO     | sum of deviations: 17693302540.000004
[2026-03-06 23:24:02] 2026-03-06 22:20:11,302 | INFO     | mean x: 1772829722.5
[2026-03-06 23:24:02] 2026-03-06 22:20:11,302 | INFO     | mean y: 2330805.5384615385
[2026-03-06 23:24:02] 2026-03-06 22:20:11,302 | INFO     | intersect: -16777842865.811766
[2026-03-06 23:24:02] 2026-03-06 22:20:11,302 | INFO     | chi2: 1.1988164017511944
[2026-03-06 23:24:02] 2026-03-06 22:20:11,302 | INFO     | current chi2=1.1988164017511944 (change=-0.05966970925362405 %)
[2026-03-06 23:24:02] 2026-03-06 22:20:11,303 | INFO     | right removable region: 181
[2026-03-06 23:24:02] 2026-03-06 22:20:11,303 | INFO     | sum of square deviations: 1869302025.5
[2026-03-06 23:24:02] 2026-03-06 22:20:11,304 | INFO     | sum of deviations: -2824456800.499998
[2026-03-06 23:24:02] 2026-03-06 22:20:11,304 | INFO     | mean x: 1772830027.5
[2026-03-06 23:24:02] 2026-03-06 22:20:11,304 | INFO     | mean y: 2351124.708791209
[2026-03-06 23:24:02] 2026-03-06 22:20:11,304 | INFO     | intersect: 2681041758.4300213
[2026-03-06 23:24:02] 2026-03-06 22:20:11,304 | INFO     | chi2: 0.0011969478267130785
[2026-03-06 23:24:02] 2026-03-06 22:20:11,305 | INFO     | current chi2=0.0011969478267130785 (change=99.90009629162134 %)
[2026-03-06 23:24:02] 2026-03-06 22:20:11,305 | INFO     | sum of square deviations: 1719429448.0
[2026-03-06 23:24:02] 2026-03-06 22:20:11,306 | INFO     | sum of deviations: -2643780748.0
[2026-03-06 23:24:02] 2026-03-06 22:20:11,306 | INFO     | mean x: 1772830180.0
[2026-03-06 23:24:02] 2026-03-06 22:20:11,306 | INFO     | mean y: 2350947.096045198
[2026-03-06 23:24:02] 2026-03-06 22:20:11,306 | INFO     | intersect: 2728240226.7109504
[2026-03-06 23:24:02] 2026-03-06 22:20:11,306 | INFO     | chi2: 0.0009025001917587022
[2026-03-06 23:24:02] 2026-03-06 22:20:11,307 | INFO     | current chi2=0.0009025001917587022 (change=24.59987214003761 %)
[2026-03-06 23:24:02] 2026-03-06 22:20:11,307 | INFO     | left removable region: 20
[2026-03-06 23:24:02] 2026-03-06 22:20:11,307 | INFO     | sum of square deviations: 1294014960.0
[2026-03-06 23:24:02] 2026-03-06 22:20:11,308 | INFO     | sum of deviations: -2209343994.0
[2026-03-06 23:24:02] 2026-03-06 22:20:11,308 | INFO     | mean x: 1772830302.0
[2026-03-06 23:24:02] 2026-03-06 22:20:11,308 | INFO     | mean y: 2350720.465838509
[2026-03-06 23:24:02] 2026-03-06 22:20:11,308 | INFO     | intersect: 3029202883.059775
[2026-03-06 23:24:02] 2026-03-06 22:20:11,308 | INFO     | chi2: 0.000741350058249954
[2026-03-06 23:24:02] 2026-03-06 22:20:11,308 | INFO     | current memory leak: -1.71 B/s (using 161 data points, chi2=0.00)
[2026-03-06 23:24:02] 2026-03-06 22:20:11,309 | INFO     | could have reported an average CPU frequency of 2564 MHz (10 samples)
[2026-03-06 23:24:02] 2026-03-06 22:20:11,309 | INFO     | ..............................
[2026-03-06 23:24:02] 2026-03-06 22:20:11,309 | INFO     | . Timing measurements:
[2026-03-06 23:24:02] 2026-03-06 22:20:11,309 | INFO     | . get job = 0 s
[2026-03-06 23:24:02] 2026-03-06 22:20:11,309 | INFO     | . initial setup = 6 s
[2026-03-06 23:24:02] 2026-03-06 22:20:11,309 | INFO     | . payload setup = 7 s
[2026-03-06 23:24:02] 2026-03-06 22:20:11,309 | INFO     | . stage-in = 0 s
[2026-03-06 23:24:02] 2026-03-06 22:20:11,310 | INFO     | . payload execution = 11409 s
[2026-03-06 23:24:02] 2026-03-06 22:20:11,310 | INFO     | . stage-out = 1 s
[2026-03-06 23:24:02] 2026-03-06 22:20:11,310 | INFO     | . log creation = 0 s
[2026-03-06 23:24:02] 2026-03-06 22:20:11,310 | INFO     | ..............................
[2026-03-06 23:24:02] 2026-03-06 22:20:11,411 | INFO     | 
[2026-03-06 23:24:02] 2026-03-06 22:20:11,411 | INFO     | job summary report
[2026-03-06 23:24:02] 2026-03-06 22:20:11,411 | INFO     | --------------------------------------------------
[2026-03-06 23:24:02] 2026-03-06 22:20:11,411 | INFO     | PanDA job id: 7042734069
[2026-03-06 23:24:02] 2026-03-06 22:20:11,411 | INFO     | task id: 48958635
[2026-03-06 23:24:02] 2026-03-06 22:20:11,411 | INFO     | errors: (none)
[2026-03-06 23:24:02] 2026-03-06 22:20:11,411 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-06 23:24:02] 2026-03-06 22:20:11,411 | INFO     | pilot state: finished 
[2026-03-06 23:24:02] 2026-03-06 22:20:11,412 | INFO     | transexitcode: 0
[2026-03-06 23:24:02] 2026-03-06 22:20:11,412 | INFO     | exeerrorcode: 0
[2026-03-06 23:24:02] 2026-03-06 22:20:11,412 | INFO     | exeerrordiag: 
[2026-03-06 23:24:02] 2026-03-06 22:20:11,412 | INFO     | exitcode: 0
[2026-03-06 23:24:02] 2026-03-06 22:20:11,412 | INFO     | exitmsg: OK
[2026-03-06 23:24:02] 2026-03-06 22:20:11,412 | INFO     | cpuconsumptiontime: 43608 s
[2026-03-06 23:24:02] 2026-03-06 22:20:11,412 | INFO     | nevents: 400
[2026-03-06 23:24:02] 2026-03-06 22:20:11,412 | INFO     | neventsw: 0
[2026-03-06 23:24:02] 2026-03-06 22:20:11,412 | INFO     | pid: 249418
[2026-03-06 23:24:02] 2026-03-06 22:20:11,412 | INFO     | pgrp: 249418
[2026-03-06 23:24:02] 2026-03-06 22:20:11,412 | INFO     | corecount: 4
[2026-03-06 23:24:02] 2026-03-06 22:20:11,412 | INFO     | event service: False
[2026-03-06 23:24:02] 2026-03-06 22:20:11,413 | INFO     | sizes: {0: 2285566, 1: 2295769, 11: 2295797, 11420: 2325063, 11421: 2325062, 11423: 2334138, 11424: 2334516}
[2026-03-06 23:24:02] 2026-03-06 22:20:11,413 | INFO     | --------------------------------------------------
[2026-03-06 23:24:02] 2026-03-06 22:20:11,413 | INFO     | 
[2026-03-06 23:24:02] 2026-03-06 22:20:11,413 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot40/slots/0
[2026-03-06 23:24:02] 2026-03-06 22:20:11,435 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-06 23:24:02] 2026-03-06 22:20:11,435 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-06 23:24:02] 2026-03-06 22:20:11,435 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-06 23:24:02] 2026-03-06 22:20:11,436 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-06 23:24:02] 2026-03-06 22:20:11,436 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-06 23:24:02] 2026-03-06 22:20:11,436 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-06 23:24:02] 2026-03-06 22:20:11,436 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-06 23:24:02] 2026-03-06 22:20:11,436 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-06 23:24:02] 2026-03-06 22:20:11,436 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-06 23:24:02] 2026-03-06 22:20:11,436 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-06 23:24:02] 2026-03-06 22:20:11,436 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-06 23:24:02] 2026-03-06 22:20:11,436 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-06 23:24:02] 2026-03-06 22:20:11,436 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-06 23:24:02] 2026-03-06 22:20:11,436 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-06 23:24:02] 2026-03-06 22:20:11,436 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-06 23:24:02] 2026-03-06 22:20:11,437 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-06 23:24:02] 2026-03-06 22:20:11,437 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-06 23:24:02] 2026-03-06 22:20:11,437 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-06 23:24:02] 2026-03-06 22:20:11,437 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-06 23:24:02] 2026-03-06 22:20:11,437 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-06 23:24:02] 2026-03-06 22:20:11,437 | INFO     | job 7042734069 has completed (purged errors)
[2026-03-06 23:24:02] 2026-03-06 22:20:11,437 | INFO     | overall cleanup function is called
[2026-03-06 23:24:02] 2026-03-06 22:20:12,445 | INFO     | --- collectZombieJob: --- 10, [249418]
[2026-03-06 23:24:02] 2026-03-06 22:20:12,445 | INFO     | zombie collector waiting for pid 249418
[2026-03-06 23:24:02] 2026-03-06 22:20:12,445 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-06 23:24:02] 2026-03-06 22:20:12,445 | INFO     | collected zombie processes
[2026-03-06 23:24:02] 2026-03-06 22:20:12,445 | INFO     | will attempt to kill all subprocesses of pid=249418
[2026-03-06 23:24:02] 2026-03-06 22:20:12,862 | INFO     | process IDs to be killed: [249418] (in reverse order)
[2026-03-06 23:24:02] 2026-03-06 22:20:12,989 | WARNING  | found no corresponding commands to process id(s)
[2026-03-06 23:24:02] 2026-03-06 22:20:12,989 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-06 23:24:02] 2026-03-06 22:20:13,005 | INFO     | did not find any defunct processes belonging to 249418
[2026-03-06 23:24:02] 2026-03-06 22:20:13,020 | INFO     | did not find any defunct processes belonging to 249418
[2026-03-06 23:24:02] 2026-03-06 22:20:13,020 | INFO     | ready for new job
[2026-03-06 23:24:02] 2026-03-06 22:20:13,021 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-06 23:24:02] 2026-03-06 22:20:13,023 | INFO     | **************************************
[2026-03-06 23:24:02] 2026-03-06 22:20:13,023 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-06 23:24:02] 2026-03-06 22:20:13,023 | INFO     | **************************************
[2026-03-06 23:24:02] 2026-03-06 22:20:13,023 | INFO     | 
[2026-03-06 23:24:02] 2026-03-06 22:20:13,027 | INFO     | architecture information:
[2026-03-06 23:24:02] 2026-03-06 22:20:13,027 | INFO     | executing command: cat /etc/os-release
[2026-03-06 23:24:02] 2026-03-06 22:20:13,045 | INFO     | cat /etc/os-release:
[2026-03-06 23:24:02] NAME="CentOS Linux"
[2026-03-06 23:24:02] VERSION="7 (Core)"
[2026-03-06 23:24:02] ID="centos"
[2026-03-06 23:24:02] ID_LIKE="rhel fedora"
[2026-03-06 23:24:02] VERSION_ID="7"
[2026-03-06 23:24:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-06 23:24:02] ANSI_COLOR="0;31"
[2026-03-06 23:24:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-06 23:24:02] HOME_URL="https://www.centos.org/"
[2026-03-06 23:24:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-06 23:24:02] 
[2026-03-06 23:24:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-06 23:24:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-06 23:24:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-06 23:24:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-06 23:24:02] 
[2026-03-06 23:24:02] 2026-03-06 22:20:13,045 | INFO     | **************************************
[2026-03-06 23:24:02] 2026-03-06 22:20:13,548 | INFO     | executing command: df -mP /var/lib/boinc/var/slot40/slots/0
[2026-03-06 23:24:02] 2026-03-06 22:20:13,567 | INFO     | sufficient remaining disk space (23849861120 B)
[2026-03-06 23:24:02] 2026-03-06 22:20:13,567 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-06 23:24:02] 2026-03-06 22:20:13,567 | INFO     | current server update state: UPDATING_FINAL
[2026-03-06 23:24:02] 2026-03-06 22:20:13,567 | INFO     | update_server=False
[2026-03-06 23:24:02] 2026-03-06 22:20:13,567 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-06 23:24:02] 2026-03-06 22:20:13,568 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-06 23:24:02] 2026-03-06 22:20:13,568 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-06 23:24:02] 2026-03-06 22:20:13,620 | INFO     | all data control threads have been joined
[2026-03-06 23:24:02] 2026-03-06 22:20:13,965 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-06 23:24:02] 2026-03-06 22:20:13,965 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-06 23:24:02] 2026-03-06 22:20:13,965 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-06 23:24:02] 2026-03-06 22:20:13,965 | INFO     | will abort loop
[2026-03-06 23:24:02] 2026-03-06 22:20:14,142 | INFO     | all payload control threads have been joined
[2026-03-06 23:24:02] 2026-03-06 22:20:14,573 | INFO     | [job] retrieve thread has finished
[2026-03-06 23:24:02] 2026-03-06 22:20:14,593 | INFO     | [payload] execute_payloads thread has finished
[2026-03-06 23:24:02] 2026-03-06 22:20:14,600 | INFO     | [job] create_data_payload thread has finished
[2026-03-06 23:24:02] 2026-03-06 22:20:14,625 | INFO     | [data] control thread has finished
[2026-03-06 23:24:02] 2026-03-06 22:20:14,655 | INFO     | [payload] validate_pre thread has finished
[2026-03-06 23:24:02] 2026-03-06 22:20:14,750 | INFO     | [data] copytool_in thread has finished
[2026-03-06 23:24:02] 2026-03-06 22:20:14,970 | INFO     | [job] job monitor thread has finished
[2026-03-06 23:24:02] 2026-03-06 22:20:15,031 | INFO     | all job control threads have been joined
[2026-03-06 23:24:02] 2026-03-06 22:20:15,086 | INFO     | [payload] validate_post thread has finished
[2026-03-06 23:24:02] 2026-03-06 22:20:15,147 | INFO     | [payload] control thread has finished
[2026-03-06 23:24:02] 2026-03-06 22:20:15,486 | INFO     | [job] validate thread has finished
[2026-03-06 23:24:02] 2026-03-06 22:20:15,573 | INFO     | [data] copytool_out thread has finished
[2026-03-06 23:24:02] 2026-03-06 22:20:16,036 | INFO     | [job] control thread has finished
[2026-03-06 23:24:02] 2026-03-06 22:20:16,153 | INFO     | [payload] failed_post thread has finished
[2026-03-06 23:24:02] 2026-03-06 22:20:16,407 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-06 23:24:02] 2026-03-06 22:20:17,412 | INFO     | [job] queue monitor thread has finished
[2026-03-06 23:24:02] 2026-03-06 22:20:17,573 | INFO     | [data] queue_monitor thread has finished
[2026-03-06 23:24:02] 2026-03-06 22:20:23,953 | INFO     | job.realtimelogging is not enabled
[2026-03-06 23:24:02] 2026-03-06 22:20:24,958 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-06 23:24:02] 2026-03-06 22:20:43,802 | INFO     | PID=244583 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-06 23:24:02] 2026-03-06 22:20:43,803 | INFO     | .. there are 12 such processes running
[2026-03-06 23:24:02] 2026-03-06 22:20:43,804 | INFO     | found 0 job(s) in 20 queues
[2026-03-06 23:24:02] 2026-03-06 22:20:43,804 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-06 23:24:02] 2026-03-06 22:20:43,804 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-06 23:24:02] 2026-03-06 22:20:54,448 | INFO     | [monitor] cgroup control has ended
[2026-03-06 23:24:02] 2026-03-06 22:20:55,933 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23062587127616)>', '<ExcThread(monitor, started 23062346213120)>']
[2026-03-06 23:24:02] 2026-03-06 22:20:56,866 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-06 23:24:02] 2026-03-06 22:20:56,866 | INFO     | [monitor] control thread has ended
[2026-03-06 23:24:02] 2026-03-06 22:21:00,958 | INFO     | all workflow threads have been joined
[2026-03-06 23:24:02] 2026-03-06 22:21:00,958 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-06 23:24:02] 2026-03-06 22:21:00,958 | INFO     | traces error code: 0
[2026-03-06 23:24:02] 2026-03-06 22:21:00,959 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-06 23:24:02] 2026-03-06 22:21:01,139 [wrapper] ==== pilot stdout END ====
[2026-03-06 23:24:02] 2026-03-06 22:21:01,142 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-06 23:24:02] 2026-03-06 22:21:01,144 [wrapper] pilotpid: 244583
[2026-03-06 23:24:02] 2026-03-06 22:21:01,166 [wrapper] Pilot exit status: 0
[2026-03-06 23:24:02] 2026-03-06 22:21:01,178 [wrapper] pandaids: 7042734069
[2026-03-06 23:24:02] 2026-03-06 22:21:01,257 [wrapper] cleanup supervisor_pilot  482454 244584
[2026-03-06 23:24:02] 2026-03-06 22:21:01,260 [wrapper] Test setup, not cleaning
[2026-03-06 23:24:02] 2026-03-06 22:21:01,263 [wrapper] apfmon messages muted
[2026-03-06 23:24:02] 2026-03-06 22:21:01,265 [wrapper] ==== wrapper stdout END ====
[2026-03-06 23:24:02] 2026-03-06 22:21:01,267 [wrapper] ==== wrapper stderr END ====
[2026-03-06 23:24:02]  *** Error codes and diagnostics ***
[2026-03-06 23:24:02]     "exeErrorCode": 0,
[2026-03-06 23:24:02]     "exeErrorDiag": "",
[2026-03-06 23:24:02]     "pilotErrorCode": 0,
[2026-03-06 23:24:02]     "pilotErrorDiag": "",
[2026-03-06 23:24:02]  *** Listing of results directory ***
[2026-03-06 23:24:02] total 448788
[2026-03-06 23:24:02] -rw-r--r--. 1 boinc boinc    584627 Mar  6 02:49 pilot3.tar.gz
[2026-03-06 23:24:02] -rwx------. 1 boinc boinc     36322 Mar  6 02:52 runpilot2-wrapper.sh
[2026-03-06 23:24:02] -rw-r--r--. 1 boinc boinc      5111 Mar  6 02:53 queuedata.json
[2026-03-06 23:24:02] -rw-r--r--. 1 boinc boinc       100 Mar  6 20:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-06 23:24:02] -rwxr-xr-x. 1 boinc boinc      7986 Mar  6 20:09 run_atlas
[2026-03-06 23:24:02] -rw-r--r--. 1 boinc boinc       105 Mar  6 20:09 job.xml
[2026-03-06 23:24:02] -rw-r--r--. 2 boinc boinc 268260678 Mar  6 20:09 EVNT.48958633._000016.pool.root.1
[2026-03-06 23:24:02] -rw-r--r--. 1 boinc boinc      6560 Mar  6 20:09 init_data.xml
[2026-03-06 23:24:02] -rw-r--r--. 2 boinc boinc     15845 Mar  6 20:09 start_atlas.sh
[2026-03-06 23:24:02] drwxrwx--x. 2 boinc boinc      4096 Mar  6 20:09 shared
[2026-03-06 23:24:02] -rw-r--r--. 2 boinc boinc    597928 Mar  6 20:09 input.tar.gz
[2026-03-06 23:24:02] -rw-r--r--. 1 boinc boinc         0 Mar  6 20:09 boinc_lockfile
[2026-03-06 23:24:02] -rw-r--r--. 1 boinc boinc      2525 Mar  6 20:09 pandaJob.out
[2026-03-06 23:24:02] -rw-------. 1 boinc boinc    999496 Mar  6 20:09 agis_schedconf.cvmfs.json
[2026-03-06 23:24:02] -rw-------. 1 boinc boinc       446 Mar  6 20:09 workernode_map.json
[2026-03-06 23:24:02] drwx------. 5 boinc boinc      4096 Mar  6 20:09 pilot3
[2026-03-06 23:24:02] -rw-------. 1 boinc boinc 183394326 Mar  6 23:19 HITS.48958635._000284.pool.root.1
[2026-03-06 23:24:02] -rw-r--r--. 1 boinc boinc       528 Mar  6 23:19 boinc_task_state.xml
[2026-03-06 23:24:02] -rw-------. 1 boinc boinc      1035 Mar  6 23:20 memory_monitor_summary.json
[2026-03-06 23:24:02] -rw-------. 1 boinc boinc   1521291 Mar  6 23:20 agis_ddmendpoints.agis.ALL.json
[2026-03-06 23:24:02] -rw-------. 1 boinc boinc    361075 Mar  6 23:20 log.48958635._000284.job.log.tgz.1
[2026-03-06 23:24:02] -rw-------. 1 boinc boinc      6394 Mar  6 23:20 heartbeat.json
[2026-03-06 23:24:02] -rw-------. 1 boinc boinc        95 Mar  6 23:20 pilot_heartbeat.json
[2026-03-06 23:24:02] -rw-------. 1 boinc boinc      5086 Mar  6 23:21 pilotlog.txt
[2026-03-06 23:24:02] -rw-------. 1 boinc boinc   1615036 Mar  6 23:21 log.48958635._000284.job.log.1
[2026-03-06 23:24:02] -rw-------. 1 boinc boinc       357 Mar  6 23:21 output.list
[2026-03-06 23:24:02] -rw-r--r--. 1 boinc boinc       620 Mar  6 23:21 runtime_log
[2026-03-06 23:24:02] -rw-------. 1 boinc boinc   1996800 Mar  6 23:21 result.tar.gz
[2026-03-06 23:24:02] -rw-r--r--. 1 boinc boinc      9205 Mar  6 23:21 runtime_log.err
[2026-03-06 23:24:02] -rw-------. 1 boinc boinc       666 Mar  6 23:21 bWkKDmzXZI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmFrPLDmLXBwhn.diag
[2026-03-06 23:24:02] -rw-r--r--. 1 boinc boinc        27 Mar  6 23:23 wrapper_checkpoint.txt
[2026-03-06 23:24:02] -rw-r--r--. 1 boinc boinc      8192 Mar  6 23:24 boinc_mmap_file
[2026-03-06 23:24:02] -rw-r--r--. 1 boinc boinc     21110 Mar  6 23:24 stderr.txt
[2026-03-06 23:24:02] HITS file was successfully produced:
[2026-03-06 23:24:02] -rw-------. 1 boinc boinc 183394326 Mar  6 23:19 shared/HITS.pool.root.1
[2026-03-06 23:24:02]  *** Contents of shared directory: ***
[2026-03-06 23:24:02] total 443636
[2026-03-06 23:24:02] -rw-r--r--. 2 boinc boinc 268260678 Mar  6 20:09 ATLAS.root_0
[2026-03-06 23:24:02] -rw-r--r--. 2 boinc boinc     15845 Mar  6 20:09 start_atlas.sh
[2026-03-06 23:24:02] -rw-r--r--. 2 boinc boinc    597928 Mar  6 20:09 input.tar.gz
[2026-03-06 23:24:02] -rw-------. 1 boinc boinc 183394326 Mar  6 23:19 HITS.pool.root.1
[2026-03-06 23:24:02] -rw-------. 1 boinc boinc   1996800 Mar  6 23:21 result.tar.gz
23:24:04 (240431): run_atlas exited; CPU time 44092.894080
23:24:04 (240431): called boinc_finish(0)

</stderr_txt>
]]>

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