Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:16:08 (409672): wrapper (7.7.26015): starting
11:16:08 (409672): wrapper: running run_atlas (--nthreads 2)
[2026-03-06 11:16:08] Arguments: --nthreads 2
[2026-03-06 11:16:08] Threads: 2
[2026-03-06 11:16:08] Checking for CVMFS
[2026-03-06 11:16:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-06 11:16:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-06 11:16:09] Running cvmfs_config stat atlas.cern.ch
[2026-03-06 11:16:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-06 11:16:09] 2.9.2.0 3393 4441 58564 156951 0 50 26596036 36864001 0 130560 0 1190296 99.975 157432 10470 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-06 11:16:09] CVMFS is ok
[2026-03-06 11:16:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-06 11:16:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-06 11:16:09] Further information can be found at the LHC@home message board.
[2026-03-06 11:16:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-06 11:16:09] Checking for apptainer binary...
[2026-03-06 11:16:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-06 11:16:09] Running /usr/bin/apptainer --version
[2026-03-06 11:16:09] apptainer version 1.4.1-1.1
[2026-03-06 11:16:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-06 11:16:09] thA337
[2026-03-06 11:16:09] apptainer works
[2026-03-06 11:16:09] Set ATHENA_PROC_NUMBER=2
[2026-03-06 11:16:09] Set ATHENA_CORE_NUMBER=2
[2026-03-06 11:16:09] Starting ATLAS job with PandaID=7042414582
[2026-03-06 11:16:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-06 13:44:50]  *** The last 200 lines of the pilot log: ***
[2026-03-06 13:44:50] 2026-03-06 12:44:17,714 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-06 13:44:50] 2026-03-06 12:44:17,714 | INFO     | job 7042414582 has completed (purged errors)
[2026-03-06 13:44:50] 2026-03-06 12:44:17,715 | INFO     | overall cleanup function is called
[2026-03-06 13:44:50] 2026-03-06 12:44:18,721 | INFO     | --- collectZombieJob: --- 10, [418103]
[2026-03-06 13:44:50] 2026-03-06 12:44:18,721 | INFO     | zombie collector waiting for pid 418103
[2026-03-06 13:44:50] 2026-03-06 12:44:18,721 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-06 13:44:50] 2026-03-06 12:44:18,721 | INFO     | collected zombie processes
[2026-03-06 13:44:50] 2026-03-06 12:44:18,722 | INFO     | will attempt to kill all subprocesses of pid=418103
[2026-03-06 13:44:50] 2026-03-06 12:44:18,754 | INFO     | process IDs to be killed: [418103] (in reverse order)
[2026-03-06 13:44:50] 2026-03-06 12:44:18,775 | WARNING  | found no corresponding commands to process id(s)
[2026-03-06 13:44:50] 2026-03-06 12:44:18,775 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-06 13:44:50] 2026-03-06 12:44:18,776 | INFO     | did not find any defunct processes belonging to 418103
[2026-03-06 13:44:50] 2026-03-06 12:44:18,776 | INFO     | did not find any defunct processes belonging to 418103
[2026-03-06 13:44:50] 2026-03-06 12:44:18,776 | INFO     | ready for new job
[2026-03-06 13:44:50] 2026-03-06 12:44:18,776 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-06 13:44:50] 2026-03-06 12:44:18,777 | INFO     | **************************************
[2026-03-06 13:44:50] 2026-03-06 12:44:18,777 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-06 13:44:50] 2026-03-06 12:44:18,777 | INFO     | **************************************
[2026-03-06 13:44:50] 2026-03-06 12:44:18,777 | INFO     | 
[2026-03-06 13:44:50] 2026-03-06 12:44:18,777 | INFO     | architecture information:
[2026-03-06 13:44:50] 2026-03-06 12:44:18,777 | INFO     | executing command: cat /etc/os-release
[2026-03-06 13:44:50] 2026-03-06 12:44:18,786 | INFO     | cat /etc/os-release:
[2026-03-06 13:44:50] NAME="CentOS Linux"
[2026-03-06 13:44:50] VERSION="7 (Core)"
[2026-03-06 13:44:50] ID="centos"
[2026-03-06 13:44:50] ID_LIKE="rhel fedora"
[2026-03-06 13:44:50] VERSION_ID="7"
[2026-03-06 13:44:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-06 13:44:50] ANSI_COLOR="0;31"
[2026-03-06 13:44:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-06 13:44:50] HOME_URL="https://www.centos.org/"
[2026-03-06 13:44:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-06 13:44:50] 
[2026-03-06 13:44:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-06 13:44:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-06 13:44:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-06 13:44:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-06 13:44:50] 
[2026-03-06 13:44:50] 2026-03-06 12:44:18,786 | INFO     | **************************************
[2026-03-06 13:44:50] 2026-03-06 12:44:19,289 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-06 13:44:50] 2026-03-06 12:44:19,301 | INFO     | sufficient remaining disk space (483981787136 B)
[2026-03-06 13:44:50] 2026-03-06 12:44:19,301 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-06 13:44:50] 2026-03-06 12:44:19,302 | INFO     | current server update state: UPDATING_FINAL
[2026-03-06 13:44:50] 2026-03-06 12:44:19,302 | INFO     | update_server=False
[2026-03-06 13:44:50] 2026-03-06 12:44:19,302 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-06 13:44:50] 2026-03-06 12:44:19,302 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-06 13:44:50] 2026-03-06 12:44:19,357 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-06 13:44:50] 2026-03-06 12:44:19,358 | INFO     | aborting loop
[2026-03-06 13:44:50] 2026-03-06 12:44:19,564 | INFO     | all data control threads have been joined
[2026-03-06 13:44:50] 2026-03-06 12:44:19,869 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-06 13:44:50] 2026-03-06 12:44:20,171 | INFO     | all job control threads have been joined
[2026-03-06 13:44:50] 2026-03-06 12:44:20,308 | INFO     | [job] queue monitor thread has finished
[2026-03-06 13:44:50] 2026-03-06 12:44:20,308 | INFO     | [job] retrieve thread has finished
[2026-03-06 13:44:50] 2026-03-06 12:44:20,363 | INFO     | [job] job monitor thread has finished
[2026-03-06 13:44:50] 2026-03-06 12:44:20,417 | INFO     | all payload control threads have been joined
[2026-03-06 13:44:50] 2026-03-06 12:44:20,431 | INFO     | [data] copytool_in thread has finished
[2026-03-06 13:44:50] 2026-03-06 12:44:20,437 | INFO     | [payload] execute_payloads thread has finished
[2026-03-06 13:44:50] 2026-03-06 12:44:20,570 | INFO     | [data] control thread has finished
[2026-03-06 13:44:50] 2026-03-06 12:44:21,068 | INFO     | [payload] validate_post thread has finished
[2026-03-06 13:44:50] 2026-03-06 12:44:21,132 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-06 13:44:50] 2026-03-06 12:44:21,177 | INFO     | [job] control thread has finished
[2026-03-06 13:44:50] 2026-03-06 12:44:21,423 | INFO     | [payload] control thread has finished
[2026-03-06 13:44:50] 2026-03-06 12:44:21,431 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-06 13:44:50] 2026-03-06 12:44:21,729 | INFO     | [job] validate thread has finished
[2026-03-06 13:44:50] 2026-03-06 12:44:21,750 | INFO     | [payload] failed_post thread has finished
[2026-03-06 13:44:50] 2026-03-06 12:44:21,774 | INFO     | [job] create_data_payload thread has finished
[2026-03-06 13:44:50] 2026-03-06 12:44:21,779 | INFO     | [payload] validate_pre thread has finished
[2026-03-06 13:44:50] 2026-03-06 12:44:21,875 | INFO     | [data] copytool_out thread has finished
[2026-03-06 13:44:50] 2026-03-06 12:44:25,138 | INFO     | [data] queue_monitor thread has finished
[2026-03-06 13:44:50] 2026-03-06 12:44:42,331 | INFO     | [monitor] cgroup control has ended
[2026-03-06 13:44:50] 2026-03-06 12:44:43,100 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140363197097792)>', '<ExcThread(monitor, started 140362316232448)>']
[2026-03-06 13:44:50] 2026-03-06 12:44:48,126 | INFO     | all workflow threads have been joined
[2026-03-06 13:44:50] 2026-03-06 12:44:48,127 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-06 13:44:50] 2026-03-06 12:44:48,127 | INFO     | traces error code: 0
[2026-03-06 13:44:50] 2026-03-06 12:44:48,127 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-06 13:44:50] 2026-03-06 12:44:50,011 | INFO     | PID=413697 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-06 13:44:50] 2026-03-06 12:44:50,011 | INFO     | found 0 job(s) in 20 queues
[2026-03-06 13:44:50] 2026-03-06 12:44:50,011 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-06 13:44:50] 2026-03-06 12:44:50,011 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-06 13:44:50] 2026-03-06 12:44:50,011 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-06 13:44:50] 2026-03-06 12:44:50,011 | INFO     | [monitor] control thread has ended
[2026-03-06 13:44:50] 2026-03-06 12:44:50,050 [wrapper] ==== pilot stdout END ====
[2026-03-06 13:44:50] 2026-03-06 12:44:50,053 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-06 13:44:50] 2026-03-06 12:44:50,055 [wrapper] pilotpid: 413697
[2026-03-06 13:44:50] 2026-03-06 12:44:50,057 [wrapper] Pilot exit status: 0
[2026-03-06 13:44:50] 2026-03-06 12:44:50,063 [wrapper] pandaids: 7042414582
[2026-03-06 13:44:50] 2026-03-06 12:44:50,077 [wrapper] cleanup supervisor_pilot  423858 413698
[2026-03-06 13:44:50] 2026-03-06 12:44:50,080 [wrapper] Test setup, not cleaning
[2026-03-06 13:44:50] 2026-03-06 12:44:50,081 [wrapper] apfmon messages muted
[2026-03-06 13:44:50] 2026-03-06 12:44:50,083 [wrapper] ==== wrapper stdout END ====
[2026-03-06 13:44:50] 2026-03-06 12:44:50,085 [wrapper] ==== wrapper stderr END ====
[2026-03-06 13:44:50]  *** Error codes and diagnostics ***
[2026-03-06 13:44:50]     "exeErrorCode": 0,
[2026-03-06 13:44:50]     "exeErrorDiag": "",
[2026-03-06 13:44:50]     "pilotErrorCode": 0,
[2026-03-06 13:44:50]     "pilotErrorDiag": "",
[2026-03-06 13:44:50]  *** Listing of results directory ***
[2026-03-06 13:44:50] total 470316
[2026-03-06 13:44:50] -rw-r--r-- 1 boinc boinc    584627 Mar  5 22:14 pilot3.tar.gz
[2026-03-06 13:44:50] -rw-r--r-- 1 boinc boinc      5111 Mar  5 22:49 queuedata.json
[2026-03-06 13:44:50] -rwx------ 1 boinc boinc     36322 Mar  5 22:49 runpilot2-wrapper.sh
[2026-03-06 13:44:50] -rw-r--r-- 1 boinc boinc       100 Mar  6 11:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-06 13:44:50] -rwxr-xr-x 1 boinc boinc      7986 Mar  6 11:16 run_atlas
[2026-03-06 13:44:50] -rw-r--r-- 1 boinc boinc       105 Mar  6 11:16 job.xml
[2026-03-06 13:44:50] -rw-r--r-- 2 boinc boinc 273113839 Mar  6 11:16 EVNT.48958625._000134.pool.root.1
[2026-03-06 13:44:50] -rw-r--r-- 2 boinc boinc    597942 Mar  6 11:16 input.tar.gz
[2026-03-06 13:44:50] -rw-r--r-- 2 boinc boinc     15845 Mar  6 11:16 start_atlas.sh
[2026-03-06 13:44:50] drwxrwx--x 2 boinc boinc      4096 Mar  6 11:16 shared
[2026-03-06 13:44:50] -rw-r--r-- 1 boinc boinc         0 Mar  6 11:16 boinc_setup_complete
[2026-03-06 13:44:50] -rw-r--r-- 1 boinc boinc      6205 Mar  6 11:16 init_data.xml
[2026-03-06 13:44:50] -rw-r--r-- 1 boinc boinc         0 Mar  6 11:16 boinc_lockfile
[2026-03-06 13:44:50] -rw-r--r-- 1 boinc boinc      2521 Mar  6 11:16 pandaJob.out
[2026-03-06 13:44:50] -rw------- 1 boinc boinc    998145 Mar  6 11:16 agis_schedconf.cvmfs.json
[2026-03-06 13:44:50] -rw------- 1 boinc boinc   1521291 Mar  6 11:16 agis_ddmendpoints.agis.ALL.json
[2026-03-06 13:44:50] -rw------- 1 boinc boinc       419 Mar  6 11:16 workernode_map.json
[2026-03-06 13:44:50] drwx------ 5 boinc boinc      4096 Mar  6 11:16 pilot3
[2026-03-06 13:44:50] -rw------- 1 boinc boinc 201492168 Mar  6 13:43 HITS.48958627._003438.pool.root.1
[2026-03-06 13:44:50] -rw-r--r-- 1 boinc boinc       529 Mar  6 13:43 boinc_task_state.xml
[2026-03-06 13:44:50] -rw------- 1 boinc boinc        95 Mar  6 13:44 pilot_heartbeat.json
[2026-03-06 13:44:50] -rw------- 1 boinc boinc      1014 Mar  6 13:44 memory_monitor_summary.json
[2026-03-06 13:44:50] -rw------- 1 boinc boinc    281363 Mar  6 13:44 log.48958627._003438.job.log.tgz.1
[2026-03-06 13:44:50] -rw------- 1 boinc boinc      6292 Mar  6 13:44 heartbeat.json
[2026-03-06 13:44:50] -rw-r--r-- 1 boinc boinc      8192 Mar  6 13:44 boinc_mmap_file
[2026-03-06 13:44:50] -rw-r--r-- 1 boinc boinc        27 Mar  6 13:44 wrapper_checkpoint.txt
[2026-03-06 13:44:50] -rw------- 1 boinc boinc       746 Mar  6 13:44 pilotlog.txt
[2026-03-06 13:44:50] -rw------- 1 boinc boinc   1261336 Mar  6 13:44 log.48958627._003438.job.log.1
[2026-03-06 13:44:50] -rw------- 1 boinc boinc       357 Mar  6 13:44 output.list
[2026-03-06 13:44:50] -rw-r--r-- 1 boinc boinc       620 Mar  6 13:44 runtime_log
[2026-03-06 13:44:50] -rw------- 1 boinc boinc   1556480 Mar  6 13:44 result.tar.gz
[2026-03-06 13:44:50] -rw-r--r-- 1 boinc boinc      8896 Mar  6 13:44 runtime_log.err
[2026-03-06 13:44:50] -rw------- 1 boinc boinc       657 Mar  6 13:44 ZGwKDmwkVI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmT9OLDmsAJnen.diag
[2026-03-06 13:44:50] -rw-r--r-- 1 boinc boinc     10892 Mar  6 13:44 stderr.txt
[2026-03-06 13:44:50] HITS file was successfully produced:
[2026-03-06 13:44:50] -rw------- 1 boinc boinc 201492168 Mar  6 13:43 shared/HITS.pool.root.1
[2026-03-06 13:44:50]  *** Contents of shared directory: ***
[2026-03-06 13:44:50] total 465612
[2026-03-06 13:44:50] -rw-r--r-- 2 boinc boinc 273113839 Mar  6 11:16 ATLAS.root_0
[2026-03-06 13:44:50] -rw-r--r-- 2 boinc boinc    597942 Mar  6 11:16 input.tar.gz
[2026-03-06 13:44:50] -rw-r--r-- 2 boinc boinc     15845 Mar  6 11:16 start_atlas.sh
[2026-03-06 13:44:50] -rw------- 1 boinc boinc 201492168 Mar  6 13:43 HITS.pool.root.1
[2026-03-06 13:44:50] -rw------- 1 boinc boinc   1556480 Mar  6 13:44 result.tar.gz
13:44:51 (409672): run_atlas exited; CPU time 17312.930540
13:44:51 (409672): called boinc_finish(0)

</stderr_txt>
]]>

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