Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:00:45 (1160556): wrapper (7.7.26015): starting
11:00:45 (1160556): wrapper: running run_atlas (--nthreads 2)
[2026-03-06 11:00:45] Arguments: --nthreads 2
[2026-03-06 11:00:45] Threads: 2
[2026-03-06 11:00:45] Checking for CVMFS
[2026-03-06 11:00:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-06 11:00:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-06 11:00:47] Running cvmfs_config stat atlas.cern.ch
[2026-03-06 11:00:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-06 11:00:47] 2.9.2.0 19250 12553 61392 156951 1 50 26112287 36864001 0 130560 0 3327330 99.975 463446 12837 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-06 11:00:47] CVMFS is ok
[2026-03-06 11:00:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-06 11:00:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-06 11:00:47] Further information can be found at the LHC@home message board.
[2026-03-06 11:00:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-06 11:00:47] Checking for apptainer binary...
[2026-03-06 11:00:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-06 11:00:47] Running /usr/bin/apptainer --version
[2026-03-06 11:00:47] apptainer version 1.4.1-1.1
[2026-03-06 11:00:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-06 11:00:47] madmaxA277a
[2026-03-06 11:00:47] apptainer works
[2026-03-06 11:00:47] Set ATHENA_PROC_NUMBER=2
[2026-03-06 11:00:47] Set ATHENA_CORE_NUMBER=2
[2026-03-06 11:00:47] Starting ATLAS job with PandaID=7038764944
[2026-03-06 11:00:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-06 12:56:24]  *** The last 200 lines of the pilot log: ***
[2026-03-06 12:56:24] 2026-03-06 11:55:24,443 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-06 12:56:24] 2026-03-06 11:55:24,443 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-06 12:56:24] 2026-03-06 11:55:24,443 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-06 12:56:24] 2026-03-06 11:55:24,443 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-06 12:56:24] 2026-03-06 11:55:24,443 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-06 12:56:24] 2026-03-06 11:55:24,443 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-06 12:56:24] 2026-03-06 11:55:24,443 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-06 12:56:24] 2026-03-06 11:55:24,443 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-06 12:56:24] 2026-03-06 11:55:24,443 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-06 12:56:24] 2026-03-06 11:55:24,443 | INFO     | job 7038764944 has completed (purged errors)
[2026-03-06 12:56:24] 2026-03-06 11:55:24,443 | INFO     | overall cleanup function is called
[2026-03-06 12:56:24] 2026-03-06 11:55:25,449 | INFO     | --- collectZombieJob: --- 10, [1168994]
[2026-03-06 12:56:24] 2026-03-06 11:55:25,450 | INFO     | zombie collector waiting for pid 1168994
[2026-03-06 12:56:24] 2026-03-06 11:55:25,450 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-06 12:56:24] 2026-03-06 11:55:25,450 | INFO     | collected zombie processes
[2026-03-06 12:56:24] 2026-03-06 11:55:25,450 | INFO     | will attempt to kill all subprocesses of pid=1168994
[2026-03-06 12:56:24] 2026-03-06 11:55:25,479 | INFO     | process IDs to be killed: [1168994] (in reverse order)
[2026-03-06 12:56:24] 2026-03-06 11:55:25,500 | WARNING  | found no corresponding commands to process id(s)
[2026-03-06 12:56:24] 2026-03-06 11:55:25,500 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-06 12:56:24] 2026-03-06 11:55:25,501 | INFO     | did not find any defunct processes belonging to 1168994
[2026-03-06 12:56:24] 2026-03-06 11:55:25,501 | INFO     | did not find any defunct processes belonging to 1168994
[2026-03-06 12:56:24] 2026-03-06 11:55:25,502 | INFO     | ready for new job
[2026-03-06 12:56:24] 2026-03-06 11:55:25,502 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-06 12:56:24] 2026-03-06 11:55:25,502 | INFO     | **************************************
[2026-03-06 12:56:24] 2026-03-06 11:55:25,502 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-06 12:56:24] 2026-03-06 11:55:25,502 | INFO     | **************************************
[2026-03-06 12:56:24] 2026-03-06 11:55:25,502 | INFO     | 
[2026-03-06 12:56:24] 2026-03-06 11:55:25,502 | INFO     | architecture information:
[2026-03-06 12:56:24] 2026-03-06 11:55:25,503 | INFO     | executing command: cat /etc/os-release
[2026-03-06 12:56:24] 2026-03-06 11:55:25,511 | INFO     | cat /etc/os-release:
[2026-03-06 12:56:24] NAME="CentOS Linux"
[2026-03-06 12:56:24] VERSION="7 (Core)"
[2026-03-06 12:56:24] ID="centos"
[2026-03-06 12:56:24] ID_LIKE="rhel fedora"
[2026-03-06 12:56:24] VERSION_ID="7"
[2026-03-06 12:56:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-06 12:56:24] ANSI_COLOR="0;31"
[2026-03-06 12:56:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-06 12:56:24] HOME_URL="https://www.centos.org/"
[2026-03-06 12:56:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-06 12:56:24] 
[2026-03-06 12:56:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-06 12:56:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-06 12:56:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-06 12:56:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-06 12:56:24] 
[2026-03-06 12:56:24] 2026-03-06 11:55:25,511 | INFO     | **************************************
[2026-03-06 12:56:24] 2026-03-06 11:55:26,013 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-06 12:56:24] 2026-03-06 11:55:26,021 | WARNING  | process 1168994 can no longer be monitored (due to stat problems) - aborting
[2026-03-06 12:56:24] 2026-03-06 11:55:26,022 | INFO     | sufficient remaining disk space (491349082112 B)
[2026-03-06 12:56:24] 2026-03-06 11:55:26,022 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-06 12:56:24] 2026-03-06 11:55:26,022 | INFO     | current server update state: UPDATING_FINAL
[2026-03-06 12:56:24] 2026-03-06 11:55:26,022 | INFO     | update_server=False
[2026-03-06 12:56:24] 2026-03-06 11:55:26,022 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-06 12:56:24] 2026-03-06 11:55:26,022 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-06 12:56:24] 2026-03-06 11:55:26,022 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-06 12:56:24] 2026-03-06 11:55:26,022 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-06 12:56:24] 2026-03-06 11:55:26,044 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-06 12:56:24] 2026-03-06 11:55:26,069 | INFO     | number of running child processes to parent process 1168994: 1
[2026-03-06 12:56:24] 2026-03-06 11:55:26,069 | INFO     | maximum number of monitored processes: 6
[2026-03-06 12:56:24] 2026-03-06 11:55:26,069 | INFO     | aborting job monitoring since job object (job id=7038764944) has expired
[2026-03-06 12:56:24] 2026-03-06 11:55:26,069 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-06 12:56:24] 2026-03-06 11:55:26,069 | INFO     | will abort loop
[2026-03-06 12:56:24] 2026-03-06 11:55:26,225 | INFO     | job.realtimelogging is not enabled
[2026-03-06 12:56:24] 2026-03-06 11:55:26,440 | INFO     | all data control threads have been joined
[2026-03-06 12:56:24] 2026-03-06 11:55:26,543 | INFO     | all payload control threads have been joined
[2026-03-06 12:56:24] 2026-03-06 11:55:27,028 | INFO     | [job] retrieve thread has finished
[2026-03-06 12:56:24] 2026-03-06 11:55:27,028 | INFO     | [job] queue monitor thread has finished
[2026-03-06 12:56:24] 2026-03-06 11:55:27,074 | INFO     | [job] job monitor thread has finished
[2026-03-06 12:56:24] 2026-03-06 11:55:27,231 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-06 12:56:24] 2026-03-06 11:55:27,425 | INFO     | [payload] execute_payloads thread has finished
[2026-03-06 12:56:24] 2026-03-06 11:55:27,446 | INFO     | [data] control thread has finished
[2026-03-06 12:56:24] 2026-03-06 11:55:27,549 | INFO     | [payload] control thread has finished
[2026-03-06 12:56:24] 2026-03-06 11:55:27,549 | INFO     | [payload] failed_post thread has finished
[2026-03-06 12:56:24] 2026-03-06 11:55:27,565 | INFO     | all job control threads have been joined
[2026-03-06 12:56:24] 2026-03-06 11:55:27,578 | INFO     | [job] validate thread has finished
[2026-03-06 12:56:24] 2026-03-06 11:55:27,667 | INFO     | [job] create_data_payload thread has finished
[2026-03-06 12:56:24] 2026-03-06 11:55:27,816 | INFO     | [payload] validate_pre thread has finished
[2026-03-06 12:56:24] 2026-03-06 11:55:27,838 | INFO     | [data] copytool_in thread has finished
[2026-03-06 12:56:24] 2026-03-06 11:55:28,029 | INFO     | [data] copytool_out thread has finished
[2026-03-06 12:56:24] 2026-03-06 11:55:28,070 | INFO     | [payload] validate_post thread has finished
[2026-03-06 12:56:24] 2026-03-06 11:55:28,570 | INFO     | [job] control thread has finished
[2026-03-06 12:56:24] 2026-03-06 11:55:30,029 | INFO     | [data] queue_monitor thread has finished
[2026-03-06 12:56:24] 2026-03-06 11:55:55,787 | INFO     | PID=1164581 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-06 12:56:24] 2026-03-06 11:55:55,787 | INFO     | found 0 job(s) in 20 queues
[2026-03-06 12:56:24] 2026-03-06 11:55:55,787 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-06 12:56:24] 2026-03-06 11:55:55,787 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-06 12:56:24] 2026-03-06 11:56:18,585 | INFO     | [monitor] cgroup control has ended
[2026-03-06 12:56:24] 2026-03-06 11:56:19,052 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139918234658624)>', '<ExcThread(monitor, started 139917585790720)>']
[2026-03-06 12:56:24] 2026-03-06 11:56:19,914 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-06 12:56:24] 2026-03-06 11:56:19,914 | INFO     | [monitor] control thread has ended
[2026-03-06 12:56:24] 2026-03-06 11:56:24,078 | INFO     | all workflow threads have been joined
[2026-03-06 12:56:24] 2026-03-06 11:56:24,079 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-06 12:56:24] 2026-03-06 11:56:24,080 | INFO     | traces error code: 0
[2026-03-06 12:56:24] 2026-03-06 11:56:24,080 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-06 12:56:24] 2026-03-06 11:56:24,122 [wrapper] ==== pilot stdout END ====
[2026-03-06 12:56:24] 2026-03-06 11:56:24,124 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-06 12:56:24] 2026-03-06 11:56:24,126 [wrapper] pilotpid: 1164581
[2026-03-06 12:56:24] 2026-03-06 11:56:24,128 [wrapper] Pilot exit status: 0
[2026-03-06 12:56:24] 2026-03-06 11:56:24,134 [wrapper] pandaids: 7038764944
[2026-03-06 12:56:24] 2026-03-06 11:56:24,147 [wrapper] cleanup supervisor_pilot 1174400 1164582
[2026-03-06 12:56:24] 2026-03-06 11:56:24,149 [wrapper] Test setup, not cleaning
[2026-03-06 12:56:24] 2026-03-06 11:56:24,152 [wrapper] apfmon messages muted
[2026-03-06 12:56:24] 2026-03-06 11:56:24,154 [wrapper] ==== wrapper stdout END ====
[2026-03-06 12:56:24] 2026-03-06 11:56:24,157 [wrapper] ==== wrapper stderr END ====
[2026-03-06 12:56:24]  *** Error codes and diagnostics ***
[2026-03-06 12:56:24]     "exeErrorCode": 0,
[2026-03-06 12:56:24]     "exeErrorDiag": "",
[2026-03-06 12:56:24]     "pilotErrorCode": 0,
[2026-03-06 12:56:24]     "pilotErrorDiag": "",
[2026-03-06 12:56:24]  *** Listing of results directory ***
[2026-03-06 12:56:24] total 623500
[2026-03-06 12:56:24] -rw-r--r-- 1 boinc boinc    584627 Mar  5 22:14 pilot3.tar.gz
[2026-03-06 12:56:24] -rwx------ 1 boinc boinc     36322 Mar  5 22:18 runpilot2-wrapper.sh
[2026-03-06 12:56:24] -rw-r--r-- 1 boinc boinc      5111 Mar  5 22:19 queuedata.json
[2026-03-06 12:56:24] -rw-r--r-- 1 boinc boinc       100 Mar  6 11:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-06 12:56:24] -rwxr-xr-x 1 boinc boinc      7986 Mar  6 11:00 run_atlas
[2026-03-06 12:56:24] -rw-r--r-- 1 boinc boinc       105 Mar  6 11:00 job.xml
[2026-03-06 12:56:24] -rw-r--r-- 2 boinc boinc 444215599 Mar  6 11:00 EVNT.46701403._000236.pool.root.1
[2026-03-06 12:56:24] -rw-r--r-- 2 boinc boinc    597959 Mar  6 11:00 input.tar.gz
[2026-03-06 12:56:24] -rw-r--r-- 2 boinc boinc     15845 Mar  6 11:00 start_atlas.sh
[2026-03-06 12:56:24] drwxrwx--x 2 boinc boinc      4096 Mar  6 11:00 shared
[2026-03-06 12:56:24] -rw-r--r-- 1 boinc boinc         0 Mar  6 11:00 boinc_setup_complete
[2026-03-06 12:56:24] -rw-r--r-- 1 boinc boinc      6209 Mar  6 11:00 init_data.xml
[2026-03-06 12:56:24] -rw-r--r-- 1 boinc boinc         0 Mar  6 11:00 boinc_lockfile
[2026-03-06 12:56:24] -rw-r--r-- 1 boinc boinc      2564 Mar  6 11:00 pandaJob.out
[2026-03-06 12:56:24] -rw------- 1 boinc boinc    998145 Mar  6 11:01 agis_schedconf.cvmfs.json
[2026-03-06 12:56:24] -rw------- 1 boinc boinc   1521291 Mar  6 11:01 agis_ddmendpoints.agis.ALL.json
[2026-03-06 12:56:24] -rw------- 1 boinc boinc       424 Mar  6 11:01 workernode_map.json
[2026-03-06 12:56:24] drwx------ 5 boinc boinc      4096 Mar  6 11:01 pilot3
[2026-03-06 12:56:24] -rw------- 1 boinc boinc 187764926 Mar  6 12:55 HITS.48955006._011780.pool.root.1
[2026-03-06 12:56:24] -rw-r--r-- 1 boinc boinc       530 Mar  6 12:55 boinc_task_state.xml
[2026-03-06 12:56:24] -rw------- 1 boinc boinc      1017 Mar  6 12:55 memory_monitor_summary.json
[2026-03-06 12:56:24] -rw------- 1 boinc boinc    286980 Mar  6 12:55 log.48955006._011780.job.log.tgz.1
[2026-03-06 12:56:24] -rw------- 1 boinc boinc      6310 Mar  6 12:55 heartbeat.json
[2026-03-06 12:56:24] -rw------- 1 boinc boinc        95 Mar  6 12:55 pilot_heartbeat.json
[2026-03-06 12:56:24] -rw-r--r-- 1 boinc boinc      8192 Mar  6 12:56 boinc_mmap_file
[2026-03-06 12:56:24] -rw-r--r-- 1 boinc boinc        27 Mar  6 12:56 wrapper_checkpoint.txt
[2026-03-06 12:56:24] -rw------- 1 boinc boinc      5344 Mar  6 12:56 pilotlog.txt
[2026-03-06 12:56:24] -rw------- 1 boinc boinc    990031 Mar  6 12:56 log.48955006._011780.job.log.1
[2026-03-06 12:56:24] -rw------- 1 boinc boinc       357 Mar  6 12:56 output.list
[2026-03-06 12:56:24] -rw-r--r-- 1 boinc boinc       620 Mar  6 12:56 runtime_log
[2026-03-06 12:56:24] -rw------- 1 boinc boinc   1290240 Mar  6 12:56 result.tar.gz
[2026-03-06 12:56:24] -rw-r--r-- 1 boinc boinc      8921 Mar  6 12:56 runtime_log.err
[2026-03-06 12:56:24] -rw------- 1 boinc boinc       662 Mar  6 12:56 HUgMDmXGVI9n9Rq4apOajLDm4fhM0noT9bVooX4SDm7zMLDmoBaYMm.diag
[2026-03-06 12:56:24] -rw-r--r-- 1 boinc boinc     12454 Mar  6 12:56 stderr.txt
[2026-03-06 12:56:24] HITS file was successfully produced:
[2026-03-06 12:56:24] -rw------- 1 boinc boinc 187764926 Mar  6 12:55 shared/HITS.pool.root.1
[2026-03-06 12:56:24]  *** Contents of shared directory: ***
[2026-03-06 12:56:24] total 619044
[2026-03-06 12:56:24] -rw-r--r-- 2 boinc boinc 444215599 Mar  6 11:00 ATLAS.root_0
[2026-03-06 12:56:24] -rw-r--r-- 2 boinc boinc    597959 Mar  6 11:00 input.tar.gz
[2026-03-06 12:56:24] -rw-r--r-- 2 boinc boinc     15845 Mar  6 11:00 start_atlas.sh
[2026-03-06 12:56:24] -rw------- 1 boinc boinc 187764926 Mar  6 12:55 HITS.pool.root.1
[2026-03-06 12:56:24] -rw------- 1 boinc boinc   1290240 Mar  6 12:56 result.tar.gz
12:56:46 (1160556): run_atlas exited; CPU time 13310.798893
12:56:46 (1160556): called boinc_finish(0)

</stderr_txt>
]]>

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