Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:54:13 (2007441): wrapper (7.7.26015): starting
22:54:13 (2007441): wrapper: running run_atlas (--nthreads 3)
[2026-03-06 22:54:13] Arguments: --nthreads 3
[2026-03-06 22:54:13] Threads: 3
[2026-03-06 22:54:13] Checking for CVMFS
[2026-03-06 22:54:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-06 22:54:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-06 22:54:13] Running cvmfs_config stat atlas.cern.ch
[2026-03-06 22:54:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-06 22:54:13] 2.9.2.0 77542 13369 86244 156972 1 50 23979675 36864001 0 130560 0 5078112 99.981 504998 11598 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-06 22:54:13] CVMFS is ok
[2026-03-06 22:54:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-06 22:54:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-06 22:54:13] Further information can be found at the LHC@home message board.
[2026-03-06 22:54:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-06 22:54:13] Checking for apptainer binary...
[2026-03-06 22:54:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-06 22:54:13] Running /usr/bin/apptainer --version
[2026-03-06 22:54:13] apptainer version 1.4.1-1.1
[2026-03-06 22:54:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-06 22:54:13] thA312
[2026-03-06 22:54:13] apptainer works
[2026-03-06 22:54:13] Set ATHENA_PROC_NUMBER=3
[2026-03-06 22:54:13] Set ATHENA_CORE_NUMBER=3
[2026-03-06 22:54:13] Starting ATLAS job with PandaID=7038717336
[2026-03-06 22:54:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 00:12:36]  *** The last 200 lines of the pilot log: ***
[2026-03-07 00:12:36] 2026-03-06 23:12:04,556 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 00:12:36] 2026-03-06 23:12:04,556 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 00:12:36] 2026-03-06 23:12:04,556 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 00:12:36] 2026-03-06 23:12:04,556 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 00:12:36] 2026-03-06 23:12:04,556 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 00:12:36] 2026-03-06 23:12:04,556 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 00:12:36] 2026-03-06 23:12:04,556 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 00:12:36] 2026-03-06 23:12:04,556 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 00:12:36] 2026-03-06 23:12:04,556 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 00:12:36] 2026-03-06 23:12:04,556 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 00:12:36] 2026-03-06 23:12:04,556 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 00:12:36] 2026-03-06 23:12:04,556 | INFO     | job 7038717336 has completed (purged errors)
[2026-03-07 00:12:36] 2026-03-06 23:12:04,556 | INFO     | overall cleanup function is called
[2026-03-07 00:12:36] 2026-03-06 23:12:05,563 | INFO     | --- collectZombieJob: --- 10, [2015912]
[2026-03-07 00:12:36] 2026-03-06 23:12:05,563 | INFO     | zombie collector waiting for pid 2015912
[2026-03-07 00:12:36] 2026-03-06 23:12:05,563 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 00:12:36] 2026-03-06 23:12:05,563 | INFO     | collected zombie processes
[2026-03-07 00:12:36] 2026-03-06 23:12:05,563 | INFO     | will attempt to kill all subprocesses of pid=2015912
[2026-03-07 00:12:36] 2026-03-06 23:12:05,613 | INFO     | process IDs to be killed: [2015912] (in reverse order)
[2026-03-07 00:12:36] 2026-03-06 23:12:05,639 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 00:12:36] 2026-03-06 23:12:05,639 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 00:12:36] 2026-03-06 23:12:05,640 | INFO     | did not find any defunct processes belonging to 2015912
[2026-03-07 00:12:36] 2026-03-06 23:12:05,642 | INFO     | did not find any defunct processes belonging to 2015912
[2026-03-07 00:12:36] 2026-03-06 23:12:05,642 | INFO     | ready for new job
[2026-03-07 00:12:36] 2026-03-06 23:12:05,642 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 00:12:36] 2026-03-06 23:12:05,642 | INFO     | **************************************
[2026-03-07 00:12:36] 2026-03-06 23:12:05,643 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 00:12:36] 2026-03-06 23:12:05,643 | INFO     | **************************************
[2026-03-07 00:12:36] 2026-03-06 23:12:05,643 | INFO     | 
[2026-03-07 00:12:36] 2026-03-06 23:12:05,643 | INFO     | architecture information:
[2026-03-07 00:12:36] 2026-03-06 23:12:05,643 | INFO     | executing command: cat /etc/os-release
[2026-03-07 00:12:36] 2026-03-06 23:12:05,652 | INFO     | cat /etc/os-release:
[2026-03-07 00:12:36] NAME="CentOS Linux"
[2026-03-07 00:12:36] VERSION="7 (Core)"
[2026-03-07 00:12:36] ID="centos"
[2026-03-07 00:12:36] ID_LIKE="rhel fedora"
[2026-03-07 00:12:36] VERSION_ID="7"
[2026-03-07 00:12:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 00:12:36] ANSI_COLOR="0;31"
[2026-03-07 00:12:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 00:12:36] HOME_URL="https://www.centos.org/"
[2026-03-07 00:12:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 00:12:36] 
[2026-03-07 00:12:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 00:12:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 00:12:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 00:12:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 00:12:36] 
[2026-03-07 00:12:36] 2026-03-06 23:12:05,652 | INFO     | **************************************
[2026-03-07 00:12:36] 2026-03-06 23:12:06,156 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-07 00:12:36] 2026-03-06 23:12:06,170 | INFO     | sufficient remaining disk space (332132253696 B)
[2026-03-07 00:12:36] 2026-03-06 23:12:06,170 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 00:12:36] 2026-03-06 23:12:06,170 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 00:12:36] 2026-03-06 23:12:06,170 | INFO     | update_server=False
[2026-03-07 00:12:36] 2026-03-06 23:12:06,170 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 00:12:36] 2026-03-06 23:12:06,170 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 00:12:36] 2026-03-06 23:12:06,170 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 00:12:36] 2026-03-06 23:12:06,412 | INFO     | all data control threads have been joined
[2026-03-07 00:12:36] 2026-03-06 23:12:06,716 | INFO     | all job control threads have been joined
[2026-03-07 00:12:36] 2026-03-06 23:12:06,965 | INFO     | all payload control threads have been joined
[2026-03-07 00:12:36] 2026-03-06 23:12:07,176 | INFO     | [job] retrieve thread has finished
[2026-03-07 00:12:36] 2026-03-06 23:12:07,176 | INFO     | [job] queue monitor thread has finished
[2026-03-07 00:12:36] 2026-03-06 23:12:07,418 | INFO     | [data] control thread has finished
[2026-03-07 00:12:36] 2026-03-06 23:12:07,721 | INFO     | [job] control thread has finished
[2026-03-07 00:12:36] 2026-03-06 23:12:07,766 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 00:12:36] 2026-03-06 23:12:07,874 | INFO     | [job] validate thread has finished
[2026-03-07 00:12:36] 2026-03-06 23:12:07,917 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 00:12:36] 2026-03-06 23:12:07,934 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 00:12:36] 2026-03-06 23:12:07,971 | INFO     | [payload] control thread has finished
[2026-03-07 00:12:36] 2026-03-06 23:12:08,059 | INFO     | [data] copytool_in thread has finished
[2026-03-07 00:12:36] 2026-03-06 23:12:08,094 | INFO     | [payload] validate_post thread has finished
[2026-03-07 00:12:36] 2026-03-06 23:12:08,176 | INFO     | [data] copytool_out thread has finished
[2026-03-07 00:12:36] 2026-03-06 23:12:08,212 | INFO     | [payload] failed_post thread has finished
[2026-03-07 00:12:36] 2026-03-06 23:12:09,098 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 00:12:36] 2026-03-06 23:12:09,183 | WARNING  | process 2015912 can no longer be monitored (due to stat problems) - aborting
[2026-03-07 00:12:36] 2026-03-06 23:12:09,217 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 00:12:36] 2026-03-06 23:12:09,260 | INFO     | number of running child processes to parent process 2015912: 1
[2026-03-07 00:12:36] 2026-03-06 23:12:09,260 | INFO     | maximum number of monitored processes: 6
[2026-03-07 00:12:36] 2026-03-06 23:12:09,260 | INFO     | aborting job monitoring since job object (job id=7038717336) has expired
[2026-03-07 00:12:36] 2026-03-06 23:12:09,260 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 00:12:36] 2026-03-06 23:12:09,260 | INFO     | will abort loop
[2026-03-07 00:12:36] 2026-03-06 23:12:10,266 | INFO     | [job] job monitor thread has finished
[2026-03-07 00:12:36] 2026-03-06 23:12:13,105 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 00:12:36] 2026-03-06 23:12:16,311 | INFO     | job.realtimelogging is not enabled
[2026-03-07 00:12:36] 2026-03-06 23:12:17,317 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 00:12:36] 2026-03-06 23:12:29,306 | INFO     | [monitor] cgroup control has ended
[2026-03-07 00:12:36] 2026-03-06 23:12:31,097 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140407053150016)>', '<ExcThread(monitor, started 140406423541504)>']
[2026-03-07 00:12:36] 2026-03-06 23:12:36,123 | INFO     | all workflow threads have been joined
[2026-03-07 00:12:36] 2026-03-06 23:12:36,123 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 00:12:36] 2026-03-06 23:12:36,123 | INFO     | traces error code: 0
[2026-03-07 00:12:36] 2026-03-06 23:12:36,123 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 00:12:36] 2026-03-06 23:12:36,721 | INFO     | PID=2011481 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-07 00:12:36] 2026-03-06 23:12:36,721 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 00:12:36] 2026-03-06 23:12:36,721 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 00:12:36] 2026-03-06 23:12:36,721 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 00:12:36] 2026-03-06 23:12:36,721 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 00:12:36] 2026-03-06 23:12:36,721 | INFO     | [monitor] control thread has ended
[2026-03-07 00:12:36] 2026-03-06 23:12:36,768 [wrapper] ==== pilot stdout END ====
[2026-03-07 00:12:36] 2026-03-06 23:12:36,770 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 00:12:36] 2026-03-06 23:12:36,773 [wrapper] pilotpid: 2011481
[2026-03-07 00:12:36] 2026-03-06 23:12:36,775 [wrapper] Pilot exit status: 0
[2026-03-07 00:12:36] 2026-03-06 23:12:36,782 [wrapper] pandaids: 7038717336
[2026-03-07 00:12:36] 2026-03-06 23:12:36,799 [wrapper] cleanup supervisor_pilot 2021742 2011482
[2026-03-07 00:12:36] 2026-03-06 23:12:36,801 [wrapper] Test setup, not cleaning
[2026-03-07 00:12:36] 2026-03-06 23:12:36,804 [wrapper] apfmon messages muted
[2026-03-07 00:12:36] 2026-03-06 23:12:36,806 [wrapper] ==== wrapper stdout END ====
[2026-03-07 00:12:36] 2026-03-06 23:12:36,808 [wrapper] ==== wrapper stderr END ====
[2026-03-07 00:12:36]  *** Error codes and diagnostics ***
[2026-03-07 00:12:36]     "exeErrorCode": 0,
[2026-03-07 00:12:36]     "exeErrorDiag": "",
[2026-03-07 00:12:36]     "pilotErrorCode": 0,
[2026-03-07 00:12:36]     "pilotErrorDiag": "",
[2026-03-07 00:12:36]  *** Listing of results directory ***
[2026-03-07 00:12:36] total 616556
[2026-03-07 00:12:36] -rw-r--r-- 1 boinc boinc    584627 Mar  5 21:04 pilot3.tar.gz
[2026-03-07 00:12:36] -rwx------ 1 boinc boinc     36322 Mar  5 21:09 runpilot2-wrapper.sh
[2026-03-07 00:12:36] -rw-r--r-- 1 boinc boinc      5111 Mar  5 21:11 queuedata.json
[2026-03-07 00:12:36] -rw-r--r-- 1 boinc boinc       100 Mar  6 22:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 00:12:36] -rwxr-xr-x 1 boinc boinc      7986 Mar  6 22:54 run_atlas
[2026-03-07 00:12:36] -rw-r--r-- 1 boinc boinc       105 Mar  6 22:54 job.xml
[2026-03-07 00:12:36] -rw-r--r-- 2 boinc boinc 439311577 Mar  6 22:54 EVNT.46701403._002159.pool.root.1
[2026-03-07 00:12:36] -rw-r--r-- 2 boinc boinc    597954 Mar  6 22:54 input.tar.gz
[2026-03-07 00:12:36] -rw-r--r-- 2 boinc boinc     15845 Mar  6 22:54 start_atlas.sh
[2026-03-07 00:12:36] drwxrwx--x 2 boinc boinc      4096 Mar  6 22:54 shared
[2026-03-07 00:12:36] -rw-r--r-- 1 boinc boinc         0 Mar  6 22:54 boinc_setup_complete
[2026-03-07 00:12:36] -rw-r--r-- 1 boinc boinc      6439 Mar  6 22:54 init_data.xml
[2026-03-07 00:12:36] -rw-r--r-- 1 boinc boinc         0 Mar  6 22:54 boinc_lockfile
[2026-03-07 00:12:36] -rw-r--r-- 1 boinc boinc      2569 Mar  6 22:54 pandaJob.out
[2026-03-07 00:12:36] -rw------- 1 boinc boinc    999504 Mar  6 22:54 agis_schedconf.cvmfs.json
[2026-03-07 00:12:36] -rw------- 1 boinc boinc   1521291 Mar  6 22:54 agis_ddmendpoints.agis.ALL.json
[2026-03-07 00:12:36] -rw------- 1 boinc boinc       427 Mar  6 22:54 workernode_map.json
[2026-03-07 00:12:36] drwx------ 5 boinc boinc      4096 Mar  6 22:54 pilot3
[2026-03-07 00:12:36] -rw------- 1 boinc boinc 186225724 Mar  7 00:11 HITS.48955015._005617.pool.root.1
[2026-03-07 00:12:36] -rw------- 1 boinc boinc        95 Mar  7 00:11 pilot_heartbeat.json
[2026-03-07 00:12:36] -rw-r--r-- 1 boinc boinc       530 Mar  7 00:11 boinc_task_state.xml
[2026-03-07 00:12:36] -rw------- 1 boinc boinc      1031 Mar  7 00:11 memory_monitor_summary.json
[2026-03-07 00:12:36] -rw------- 1 boinc boinc    254070 Mar  7 00:12 log.48955015._005617.job.log.tgz.1
[2026-03-07 00:12:36] -rw------- 1 boinc boinc      6313 Mar  7 00:12 heartbeat.json
[2026-03-07 00:12:36] -rw-r--r-- 1 boinc boinc        27 Mar  7 00:12 wrapper_checkpoint.txt
[2026-03-07 00:12:36] -rw-r--r-- 1 boinc boinc      8192 Mar  7 00:12 boinc_mmap_file
[2026-03-07 00:12:36] -rw------- 1 boinc boinc       747 Mar  7 00:12 pilotlog.txt
[2026-03-07 00:12:36] -rw------- 1 boinc boinc    686827 Mar  7 00:12 log.48955015._005617.job.log.1
[2026-03-07 00:12:36] -rw------- 1 boinc boinc       357 Mar  7 00:12 output.list
[2026-03-07 00:12:36] -rw-r--r-- 1 boinc boinc       620 Mar  7 00:12 runtime_log
[2026-03-07 00:12:36] -rw------- 1 boinc boinc    962560 Mar  7 00:12 result.tar.gz
[2026-03-07 00:12:36] -rw-r--r-- 1 boinc boinc      8896 Mar  7 00:12 runtime_log.err
[2026-03-07 00:12:36] -rw------- 1 boinc boinc       657 Mar  7 00:12 RzVNDm2BUI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmvzOLDmJefMln.diag
[2026-03-07 00:12:36] -rw-r--r-- 1 boinc boinc     12658 Mar  7 00:12 stderr.txt
[2026-03-07 00:12:36] HITS file was successfully produced:
[2026-03-07 00:12:36] -rw------- 1 boinc boinc 186225724 Mar  7 00:11 shared/HITS.pool.root.1
[2026-03-07 00:12:36]  *** Contents of shared directory: ***
[2026-03-07 00:12:36] total 612428
[2026-03-07 00:12:36] -rw-r--r-- 2 boinc boinc 439311577 Mar  6 22:54 ATLAS.root_0
[2026-03-07 00:12:36] -rw-r--r-- 2 boinc boinc    597954 Mar  6 22:54 input.tar.gz
[2026-03-07 00:12:36] -rw-r--r-- 2 boinc boinc     15845 Mar  6 22:54 start_atlas.sh
[2026-03-07 00:12:36] -rw------- 1 boinc boinc 186225724 Mar  7 00:11 HITS.pool.root.1
[2026-03-07 00:12:36] -rw------- 1 boinc boinc    962560 Mar  7 00:12 result.tar.gz
00:12:38 (2007441): run_atlas exited; CPU time 13325.711827
00:12:38 (2007441): called boinc_finish(0)

</stderr_txt>
]]>

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