Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:46:41 (2263719): wrapper (7.7.26015): starting
09:46:41 (2263719): wrapper: running run_atlas (--nthreads 4)
[2026-03-06 09:46:41] Arguments: --nthreads 4
[2026-03-06 09:46:41] Threads: 4
[2026-03-06 09:46:41] Checking for CVMFS
[2026-03-06 09:46:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-06 09:46:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-06 09:46:42] Running cvmfs_config stat atlas.cern.ch
[2026-03-06 09:46:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-06 09:46:42] 2.9.2.0 150552 12432 99664 156950 1 50 32188544 36864001 0 130560 0 5409608 99.984 463613 11720 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-06 09:46:42] CVMFS is ok
[2026-03-06 09:46:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-06 09:46:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-06 09:46:42] Further information can be found at the LHC@home message board.
[2026-03-06 09:46:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-06 09:46:42] Checking for apptainer binary...
[2026-03-06 09:46:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-06 09:46:42] Running /usr/bin/apptainer --version
[2026-03-06 09:46:42] apptainer version 1.4.1-1.1
[2026-03-06 09:46:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-06 09:46:43] thA317
[2026-03-06 09:46:43] apptainer works
[2026-03-06 09:46:43] Set ATHENA_PROC_NUMBER=4
[2026-03-06 09:46:43] Set ATHENA_CORE_NUMBER=4
[2026-03-06 09:46:43] Starting ATLAS job with PandaID=7042304374
[2026-03-06 09:46:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-06 10:56:17]  *** The last 200 lines of the pilot log: ***
[2026-03-06 10:56:17] 2026-03-06 09:55:44,239 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-06 10:56:17] 2026-03-06 09:55:44,239 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-06 10:56:17] 2026-03-06 09:55:44,240 | INFO     | job 7042304374 has completed (purged errors)
[2026-03-06 10:56:17] 2026-03-06 09:55:44,240 | INFO     | overall cleanup function is called
[2026-03-06 10:56:17] 2026-03-06 09:55:45,246 | INFO     | --- collectZombieJob: --- 10, [2272340]
[2026-03-06 10:56:17] 2026-03-06 09:55:45,246 | INFO     | zombie collector waiting for pid 2272340
[2026-03-06 10:56:17] 2026-03-06 09:55:45,246 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-06 10:56:17] 2026-03-06 09:55:45,246 | INFO     | collected zombie processes
[2026-03-06 10:56:17] 2026-03-06 09:55:45,246 | INFO     | will attempt to kill all subprocesses of pid=2272340
[2026-03-06 10:56:17] 2026-03-06 09:55:45,301 | INFO     | process IDs to be killed: [2272340] (in reverse order)
[2026-03-06 10:56:17] 2026-03-06 09:55:45,338 | WARNING  | found no corresponding commands to process id(s)
[2026-03-06 10:56:17] 2026-03-06 09:55:45,338 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-06 10:56:17] 2026-03-06 09:55:45,341 | INFO     | did not find any defunct processes belonging to 2272340
[2026-03-06 10:56:17] 2026-03-06 09:55:45,343 | INFO     | did not find any defunct processes belonging to 2272340
[2026-03-06 10:56:17] 2026-03-06 09:55:45,343 | INFO     | ready for new job
[2026-03-06 10:56:17] 2026-03-06 09:55:45,343 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-06 10:56:17] 2026-03-06 09:55:45,343 | INFO     | **************************************
[2026-03-06 10:56:17] 2026-03-06 09:55:45,343 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-06 10:56:17] 2026-03-06 09:55:45,343 | INFO     | **************************************
[2026-03-06 10:56:17] 2026-03-06 09:55:45,343 | INFO     | 
[2026-03-06 10:56:17] 2026-03-06 09:55:45,344 | INFO     | architecture information:
[2026-03-06 10:56:17] 2026-03-06 09:55:45,344 | INFO     | executing command: cat /etc/os-release
[2026-03-06 10:56:17] 2026-03-06 09:55:45,358 | INFO     | cat /etc/os-release:
[2026-03-06 10:56:17] NAME="CentOS Linux"
[2026-03-06 10:56:17] VERSION="7 (Core)"
[2026-03-06 10:56:17] ID="centos"
[2026-03-06 10:56:17] ID_LIKE="rhel fedora"
[2026-03-06 10:56:17] VERSION_ID="7"
[2026-03-06 10:56:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-06 10:56:17] ANSI_COLOR="0;31"
[2026-03-06 10:56:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-06 10:56:17] HOME_URL="https://www.centos.org/"
[2026-03-06 10:56:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-06 10:56:17] 
[2026-03-06 10:56:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-06 10:56:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-06 10:56:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-06 10:56:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-06 10:56:17] 
[2026-03-06 10:56:17] 2026-03-06 09:55:45,359 | INFO     | **************************************
[2026-03-06 10:56:17] 2026-03-06 09:55:45,862 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-06 10:56:17] 2026-03-06 09:55:45,879 | INFO     | sufficient remaining disk space (226644459520 B)
[2026-03-06 10:56:17] 2026-03-06 09:55:45,879 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-06 10:56:17] 2026-03-06 09:55:45,879 | INFO     | current server update state: UPDATING_FINAL
[2026-03-06 10:56:17] 2026-03-06 09:55:45,879 | INFO     | update_server=False
[2026-03-06 10:56:17] 2026-03-06 09:55:45,879 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-06 10:56:17] 2026-03-06 09:55:45,880 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-06 10:56:17] 2026-03-06 09:55:45,880 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-06 10:56:17] 2026-03-06 09:55:46,232 | INFO     | all payload control threads have been joined
[2026-03-06 10:56:17] 2026-03-06 09:55:46,502 | INFO     | all data control threads have been joined
[2026-03-06 10:56:17] 2026-03-06 09:55:46,554 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-06 10:56:17] 2026-03-06 09:55:46,555 | INFO     | aborting loop
[2026-03-06 10:56:17] 2026-03-06 09:55:46,885 | INFO     | [job] retrieve thread has finished
[2026-03-06 10:56:17] 2026-03-06 09:55:46,885 | INFO     | [job] queue monitor thread has finished
[2026-03-06 10:56:17] 2026-03-06 09:55:46,900 | INFO     | [job] create_data_payload thread has finished
[2026-03-06 10:56:17] 2026-03-06 09:55:46,958 | INFO     | [payload] validate_pre thread has finished
[2026-03-06 10:56:17] 2026-03-06 09:55:47,082 | INFO     | [data] copytool_in thread has finished
[2026-03-06 10:56:17] 2026-03-06 09:55:47,112 | INFO     | all job control threads have been joined
[2026-03-06 10:56:17] 2026-03-06 09:55:47,213 | INFO     | [payload] validate_post thread has finished
[2026-03-06 10:56:17] 2026-03-06 09:55:47,237 | INFO     | [payload] control thread has finished
[2026-03-06 10:56:17] 2026-03-06 09:55:47,317 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-06 10:56:17] 2026-03-06 09:55:47,507 | INFO     | [data] control thread has finished
[2026-03-06 10:56:17] 2026-03-06 09:55:47,560 | INFO     | [job] job monitor thread has finished
[2026-03-06 10:56:17] 2026-03-06 09:55:47,886 | INFO     | [data] copytool_out thread has finished
[2026-03-06 10:56:17] 2026-03-06 09:55:48,113 | INFO     | [job] control thread has finished
[2026-03-06 10:56:17] 2026-03-06 09:55:48,166 | INFO     | [payload] execute_payloads thread has finished
[2026-03-06 10:56:17] 2026-03-06 09:55:48,260 | INFO     | [job] validate thread has finished
[2026-03-06 10:56:17] 2026-03-06 09:55:48,309 | INFO     | [payload] failed_post thread has finished
[2026-03-06 10:56:17] 2026-03-06 09:55:49,242 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-06 10:56:17] 2026-03-06 09:55:53,249 | INFO     | [data] queue_monitor thread has finished
[2026-03-06 10:56:17] 2026-03-06 09:56:01,544 | INFO     | [monitor] cgroup control has ended
[2026-03-06 10:56:17] 2026-03-06 09:56:02,537 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140125501978432)>', '<ExcThread(monitor, started 140124776032000)>']
[2026-03-06 10:56:17] 2026-03-06 09:56:07,551 | INFO     | all workflow threads have been joined
[2026-03-06 10:56:17] 2026-03-06 09:56:07,551 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-06 10:56:17] 2026-03-06 09:56:07,551 | INFO     | traces error code: 0
[2026-03-06 10:56:17] 2026-03-06 09:56:07,551 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-06 10:56:17] 2026-03-06 09:56:16,878 | INFO     | PID=2267834 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-06 10:56:17] 2026-03-06 09:56:16,878 | INFO     | found 0 job(s) in 20 queues
[2026-03-06 10:56:17] 2026-03-06 09:56:16,878 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-06 10:56:17] 2026-03-06 09:56:16,878 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-06 10:56:17] 2026-03-06 09:56:16,878 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-06 10:56:17] 2026-03-06 09:56:16,878 | CRITICAL | thread 'MainThread' is not alive
[2026-03-06 10:56:17] 2026-03-06 09:56:16,878 | INFO     | [monitor] control thread has ended
[2026-03-06 10:56:17] 2026-03-06 09:56:16,956 [wrapper] ==== pilot stdout END ====
[2026-03-06 10:56:17] 2026-03-06 09:56:16,960 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-06 10:56:17] 2026-03-06 09:56:16,965 [wrapper] pilotpid: 2267834
[2026-03-06 10:56:17] 2026-03-06 09:56:16,969 [wrapper] Pilot exit status: 0
[2026-03-06 10:56:17] 2026-03-06 09:56:16,981 [wrapper] pandaids: 7042304374
[2026-03-06 10:56:17] 2026-03-06 09:56:17,005 [wrapper] cleanup supervisor_pilot 2278779 2267835
[2026-03-06 10:56:17] 2026-03-06 09:56:17,009 [wrapper] Test setup, not cleaning
[2026-03-06 10:56:17] 2026-03-06 09:56:17,013 [wrapper] apfmon messages muted
[2026-03-06 10:56:17] 2026-03-06 09:56:17,017 [wrapper] ==== wrapper stdout END ====
[2026-03-06 10:56:17] 2026-03-06 09:56:17,021 [wrapper] ==== wrapper stderr END ====
[2026-03-06 10:56:17]  *** Error codes and diagnostics ***
[2026-03-06 10:56:17]     "exeErrorCode": 0,
[2026-03-06 10:56:17]     "exeErrorDiag": "",
[2026-03-06 10:56:17]     "pilotErrorCode": 0,
[2026-03-06 10:56:17]     "pilotErrorDiag": "",
[2026-03-06 10:56:17]  *** Listing of results directory ***
[2026-03-06 10:56:17] total 433548
[2026-03-06 10:56:17] -rw-r--r-- 1 boinc boinc    584627 Mar  5 22:14 pilot3.tar.gz
[2026-03-06 10:56:17] -rw-r--r-- 1 boinc boinc      5111 Mar  5 22:15 queuedata.json
[2026-03-06 10:56:17] -rwx------ 1 boinc boinc     36322 Mar  5 22:15 runpilot2-wrapper.sh
[2026-03-06 10:56:17] -rw-r--r-- 1 boinc boinc       100 Mar  6 09:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-06 10:56:17] -rwxr-xr-x 1 boinc boinc      7986 Mar  6 09:46 run_atlas
[2026-03-06 10:56:17] -rw-r--r-- 1 boinc boinc       105 Mar  6 09:46 job.xml
[2026-03-06 10:56:17] -rw-r--r-- 2 boinc boinc 261505442 Mar  6 09:46 EVNT.48958649._000041.pool.root.1
[2026-03-06 10:56:17] -rw-r--r-- 2 boinc boinc    597982 Mar  6 09:46 input.tar.gz
[2026-03-06 10:56:17] -rw-r--r-- 2 boinc boinc     15845 Mar  6 09:46 start_atlas.sh
[2026-03-06 10:56:17] drwxrwx--x 2 boinc boinc      4096 Mar  6 09:46 shared
[2026-03-06 10:56:17] -rw-r--r-- 1 boinc boinc         0 Mar  6 09:46 boinc_setup_complete
[2026-03-06 10:56:17] -rw-r--r-- 1 boinc boinc      6376 Mar  6 09:46 init_data.xml
[2026-03-06 10:56:17] -rw-r--r-- 1 boinc boinc         0 Mar  6 09:46 boinc_lockfile
[2026-03-06 10:56:17] -rw-r--r-- 1 boinc boinc      2620 Mar  6 09:46 pandaJob.out
[2026-03-06 10:56:17] -rw------- 1 boinc boinc    998145 Mar  6 09:46 agis_schedconf.cvmfs.json
[2026-03-06 10:56:17] -rw------- 1 boinc boinc   1521291 Mar  6 09:46 agis_ddmendpoints.agis.ALL.json
[2026-03-06 10:56:17] -rw------- 1 boinc boinc       427 Mar  6 09:46 workernode_map.json
[2026-03-06 10:56:17] drwx------ 5 boinc boinc      4096 Mar  6 09:46 pilot3
[2026-03-06 10:56:17] -rw------- 1 boinc boinc 176799726 Mar  6 10:55 HITS.48958651._001031.pool.root.1
[2026-03-06 10:56:17] -rw-r--r-- 1 boinc boinc       530 Mar  6 10:55 boinc_task_state.xml
[2026-03-06 10:56:17] -rw------- 1 boinc boinc      1022 Mar  6 10:55 memory_monitor_summary.json
[2026-03-06 10:56:17] -rw------- 1 boinc boinc    252595 Mar  6 10:55 log.48958651._001031.job.log.tgz.1
[2026-03-06 10:56:17] -rw------- 1 boinc boinc      6315 Mar  6 10:55 heartbeat.json
[2026-03-06 10:56:17] -rw-r--r-- 1 boinc boinc      8192 Mar  6 10:55 boinc_mmap_file
[2026-03-06 10:56:17] -rw-r--r-- 1 boinc boinc        27 Mar  6 10:55 wrapper_checkpoint.txt
[2026-03-06 10:56:17] -rw------- 1 boinc boinc       817 Mar  6 10:56 pilotlog.txt
[2026-03-06 10:56:17] -rw------- 1 boinc boinc        95 Mar  6 10:56 pilot_heartbeat.json
[2026-03-06 10:56:17] -rw------- 1 boinc boinc    614075 Mar  6 10:56 log.48958651._001031.job.log.1
[2026-03-06 10:56:17] -rw------- 1 boinc boinc       357 Mar  6 10:56 output.list
[2026-03-06 10:56:17] -rw-r--r-- 1 boinc boinc       620 Mar  6 10:56 runtime_log
[2026-03-06 10:56:17] -rw------- 1 boinc boinc    880640 Mar  6 10:56 result.tar.gz
[2026-03-06 10:56:17] -rw-r--r-- 1 boinc boinc      8896 Mar  6 10:56 runtime_log.err
[2026-03-06 10:56:17] -rw------- 1 boinc boinc       657 Mar  6 10:56 nnSMDmhDVI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmPuMLDmKlECXm.diag
[2026-03-06 10:56:17] -rw-r--r-- 1 boinc boinc     11105 Mar  6 10:56 stderr.txt
[2026-03-06 10:56:17] HITS file was successfully produced:
[2026-03-06 10:56:17] -rw------- 1 boinc boinc 176799726 Mar  6 10:55 shared/HITS.pool.root.1
[2026-03-06 10:56:17]  *** Contents of shared directory: ***
[2026-03-06 10:56:17] total 429504
[2026-03-06 10:56:17] -rw-r--r-- 2 boinc boinc 261505442 Mar  6 09:46 ATLAS.root_0
[2026-03-06 10:56:17] -rw-r--r-- 2 boinc boinc    597982 Mar  6 09:46 input.tar.gz
[2026-03-06 10:56:17] -rw-r--r-- 2 boinc boinc     15845 Mar  6 09:46 start_atlas.sh
[2026-03-06 10:56:17] -rw------- 1 boinc boinc 176799726 Mar  6 10:55 HITS.pool.root.1
[2026-03-06 10:56:17] -rw------- 1 boinc boinc    880640 Mar  6 10:56 result.tar.gz
10:56:18 (2263719): run_atlas exited; CPU time 15411.159159
10:56:18 (2263719): called boinc_finish(0)

</stderr_txt>
]]>

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