Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:53:44 (1935630): wrapper (7.7.26015): starting
12:53:44 (1935630): wrapper: running run_atlas (--nthreads 3)
[2026-03-06 12:53:44] Arguments: --nthreads 3
[2026-03-06 12:53:44] Threads: 3
[2026-03-06 12:53:44] Checking for CVMFS
[2026-03-06 12:53:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-06 12:53:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-06 12:53:45] Running cvmfs_config stat atlas.cern.ch
[2026-03-06 12:53:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-06 12:53:45] 2.9.2.0 48833 12696 95812 156955 3 50 30981390 36864001 0 130560 0 5299438 99.982 480751 7663 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-06 12:53:45] CVMFS is ok
[2026-03-06 12:53:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-06 12:53:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-06 12:53:45] Further information can be found at the LHC@home message board.
[2026-03-06 12:53:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-06 12:53:45] Checking for apptainer binary...
[2026-03-06 12:53:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-06 12:53:45] Running /usr/bin/apptainer --version
[2026-03-06 12:53:45] apptainer version 1.4.1-1.1
[2026-03-06 12:53:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-06 12:53:45] magicA161a
[2026-03-06 12:53:45] apptainer works
[2026-03-06 12:53:45] Set ATHENA_PROC_NUMBER=3
[2026-03-06 12:53:45] Set ATHENA_CORE_NUMBER=3
[2026-03-06 12:53:45] Starting ATLAS job with PandaID=7038817551
[2026-03-06 12:53:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-06 14:09:07]  *** The last 200 lines of the pilot log: ***
[2026-03-06 14:09:07] 2026-03-06 13:08:14,353 | INFO     | all payload control threads have been joined
[2026-03-06 14:09:07] 2026-03-06 13:08:14,662 | INFO     | [job] retrieve thread has finished
[2026-03-06 14:09:07] 2026-03-06 13:08:14,662 | INFO     | [job] queue monitor thread has finished
[2026-03-06 14:09:07] 2026-03-06 13:08:14,832 | INFO     | [payload] failed_post thread has finished
[2026-03-06 14:09:07] 2026-03-06 13:08:14,855 | WARNING  | process 1944095 can no longer be monitored (due to stat problems) - aborting
[2026-03-06 14:09:07] 2026-03-06 13:08:14,883 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-06 14:09:07] 2026-03-06 13:08:14,918 | INFO     | number of running child processes to parent process 1944095: 1
[2026-03-06 14:09:07] 2026-03-06 13:08:14,918 | INFO     | maximum number of monitored processes: 6
[2026-03-06 14:09:07] 2026-03-06 13:08:14,918 | INFO     | aborting job monitoring since job object (job id=7038817551) has expired
[2026-03-06 14:09:07] 2026-03-06 13:08:14,918 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-06 14:09:07] 2026-03-06 13:08:14,919 | INFO     | will abort loop
[2026-03-06 14:09:07] 2026-03-06 13:08:15,133 | INFO     | [job] control thread has finished
[2026-03-06 14:09:07] 2026-03-06 13:08:15,336 | INFO     | [data] control thread has finished
[2026-03-06 14:09:07] 2026-03-06 13:08:15,358 | INFO     | [payload] control thread has finished
[2026-03-06 14:09:07] 2026-03-06 13:08:15,372 | INFO     | [job] validate thread has finished
[2026-03-06 14:09:07] 2026-03-06 13:08:15,426 | INFO     | [job] create_data_payload thread has finished
[2026-03-06 14:09:07] 2026-03-06 13:08:15,495 | INFO     | [payload] validate_pre thread has finished
[2026-03-06 14:09:07] 2026-03-06 13:08:15,566 | INFO     | [payload] execute_payloads thread has finished
[2026-03-06 14:09:07] 2026-03-06 13:08:15,652 | INFO     | [data] copytool_in thread has finished
[2026-03-06 14:09:07] 2026-03-06 13:08:15,662 | INFO     | [data] copytool_out thread has finished
[2026-03-06 14:09:07] 2026-03-06 13:08:15,897 | INFO     | [payload] validate_post thread has finished
[2026-03-06 14:09:07] 2026-03-06 13:08:15,924 | INFO     | [job] job monitor thread has finished
[2026-03-06 14:09:07] 2026-03-06 13:08:17,664 | INFO     | [data] queue_monitor thread has finished
[2026-03-06 14:09:07] 2026-03-06 13:08:23,939 | INFO     | job.realtimelogging is not enabled
[2026-03-06 14:09:07] 2026-03-06 13:08:24,945 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-06 14:09:07] 2026-03-06 13:08:43,356 | INFO     | PID=1939674 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-06 14:09:07] 2026-03-06 13:08:43,356 | INFO     | found 0 job(s) in 20 queues
[2026-03-06 14:09:07] 2026-03-06 13:08:43,356 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-06 14:09:07] 2026-03-06 13:08:43,356 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-06 14:09:07] 2026-03-06 13:08:52,139 [wrapper] supervise_pilot (15 min periods counter: 6)
[2026-03-06 14:09:07] 2026-03-06 13:09:01,666 | INFO     | [monitor] cgroup control has ended
[2026-03-06 14:09:07] 2026-03-06 13:09:02,144 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139668596209472)>', '<ExcThread(monitor, started 139667974387456)>']
[2026-03-06 14:09:07] 2026-03-06 13:09:02,455 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-06 14:09:07] 2026-03-06 13:09:02,455 | INFO     | [monitor] control thread has ended
[2026-03-06 14:09:07] 2026-03-06 13:09:07,162 | INFO     | all workflow threads have been joined
[2026-03-06 14:09:07] 2026-03-06 13:09:07,162 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-06 14:09:07] 2026-03-06 13:09:07,162 | INFO     | traces error code: 0
[2026-03-06 14:09:07] 2026-03-06 13:09:07,162 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-06 14:09:07] 2026-03-06 13:09:07,209 [wrapper] ==== pilot stdout END ====
[2026-03-06 14:09:07] 2026-03-06 13:09:07,212 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-06 14:09:07] 2026-03-06 13:09:07,214 [wrapper] pilotpid: 1939674
[2026-03-06 14:09:07] 2026-03-06 13:09:07,217 [wrapper] Pilot exit status: 0
[2026-03-06 14:09:07] 2026-03-06 13:09:07,224 [wrapper] pandaids: 7038817551
[2026-03-06 14:09:07] 2026-03-06 13:09:07,242 [wrapper] cleanup supervisor_pilot 1949628 1939675
[2026-03-06 14:09:07] 2026-03-06 13:09:07,244 [wrapper] Test setup, not cleaning
[2026-03-06 14:09:07] 2026-03-06 13:09:07,247 [wrapper] apfmon messages muted
[2026-03-06 14:09:07] 2026-03-06 13:09:07,249 [wrapper] ==== wrapper stdout END ====
[2026-03-06 14:09:07] 2026-03-06 13:09:07,251 [wrapper] ==== wrapper stderr END ====
[2026-03-06 14:09:07]  *** Error codes and diagnostics ***
[2026-03-06 14:09:07]     "exeErrorCode": 0,
[2026-03-06 14:09:07]     "exeErrorDiag": "",
[2026-03-06 14:09:07]     "pilotErrorCode": 0,
[2026-03-06 14:09:07]     "pilotErrorDiag": "",
[2026-03-06 14:09:07]  *** Listing of results directory ***
[2026-03-06 14:09:07] total 620308
[2026-03-06 14:09:07] -rw-r--r-- 1 boinc boinc    584627 Mar  5 23:42 pilot3.tar.gz
[2026-03-06 14:09:07] -rw-r--r-- 1 boinc boinc      5111 Mar  6 00:16 queuedata.json
[2026-03-06 14:09:07] -rwx------ 1 boinc boinc     36322 Mar  6 00:16 runpilot2-wrapper.sh
[2026-03-06 14:09:07] -rw-r--r-- 1 boinc boinc       100 Mar  6 12:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-06 14:09:07] -rwxr-xr-x 1 boinc boinc      7986 Mar  6 12:53 run_atlas
[2026-03-06 14:09:07] -rw-r--r-- 1 boinc boinc       105 Mar  6 12:53 job.xml
[2026-03-06 14:09:07] -rw-r--r-- 2 boinc boinc 443198419 Mar  6 12:53 EVNT.46701403._000259.pool.root.1
[2026-03-06 14:09:07] -rw-r--r-- 2 boinc boinc    597958 Mar  6 12:53 input.tar.gz
[2026-03-06 14:09:07] -rw-r--r-- 2 boinc boinc     15845 Mar  6 12:53 start_atlas.sh
[2026-03-06 14:09:07] drwxrwx--x 2 boinc boinc      4096 Mar  6 12:53 shared
[2026-03-06 14:09:07] -rw-r--r-- 1 boinc boinc         0 Mar  6 12:53 boinc_setup_complete
[2026-03-06 14:09:07] -rw-r--r-- 1 boinc boinc      6450 Mar  6 12:53 init_data.xml
[2026-03-06 14:09:07] -rw-r--r-- 1 boinc boinc         0 Mar  6 12:53 boinc_lockfile
[2026-03-06 14:09:07] -rw-r--r-- 1 boinc boinc      2564 Mar  6 12:53 pandaJob.out
[2026-03-06 14:09:07] -rw------- 1 boinc boinc    998891 Mar  6 12:53 agis_schedconf.cvmfs.json
[2026-03-06 14:09:07] -rw------- 1 boinc boinc   1521291 Mar  6 12:53 agis_ddmendpoints.agis.ALL.json
[2026-03-06 14:09:07] -rw------- 1 boinc boinc       427 Mar  6 12:53 workernode_map.json
[2026-03-06 14:09:07] drwx------ 5 boinc boinc      4096 Mar  6 12:53 pilot3
[2026-03-06 14:09:07] -rw------- 1 boinc boinc 186232199 Mar  6 14:07 HITS.48955006._012927.pool.root.1
[2026-03-06 14:09:07] -rw-r--r-- 1 boinc boinc       530 Mar  6 14:07 boinc_task_state.xml
[2026-03-06 14:09:07] -rw------- 1 boinc boinc      1028 Mar  6 14:08 memory_monitor_summary.json
[2026-03-06 14:09:07] -rw------- 1 boinc boinc    265200 Mar  6 14:08 log.48955006._012927.job.log.tgz.1
[2026-03-06 14:09:07] -rw------- 1 boinc boinc      6309 Mar  6 14:08 heartbeat.json
[2026-03-06 14:09:07] -rw------- 1 boinc boinc        95 Mar  6 14:08 pilot_heartbeat.json
[2026-03-06 14:09:07] -rw-r--r-- 1 boinc boinc        27 Mar  6 14:08 wrapper_checkpoint.txt
[2026-03-06 14:09:07] -rw-r--r-- 1 boinc boinc      8192 Mar  6 14:08 boinc_mmap_file
[2026-03-06 14:09:07] -rw------- 1 boinc boinc      5344 Mar  6 14:09 pilotlog.txt
[2026-03-06 14:09:07] -rw------- 1 boinc boinc    658877 Mar  6 14:09 log.48955006._012927.job.log.1
[2026-03-06 14:09:07] -rw------- 1 boinc boinc       357 Mar  6 14:09 output.list
[2026-03-06 14:09:07] -rw-r--r-- 1 boinc boinc       620 Mar  6 14:09 runtime_log
[2026-03-06 14:09:07] -rw------- 1 boinc boinc    942080 Mar  6 14:09 result.tar.gz
[2026-03-06 14:09:07] -rw-r--r-- 1 boinc boinc      8916 Mar  6 14:09 runtime_log.err
[2026-03-06 14:09:07] -rw------- 1 boinc boinc       661 Mar  6 14:09 0A9NDms6WI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmAHNLDmv81Yyn.diag
[2026-03-06 14:09:07] -rw-r--r-- 1 boinc boinc      7434 Mar  6 14:09 stderr.txt
[2026-03-06 14:09:07] HITS file was successfully produced:
[2026-03-06 14:09:07] -rw------- 1 boinc boinc 186232199 Mar  6 14:07 shared/HITS.pool.root.1
[2026-03-06 14:09:07]  *** Contents of shared directory: ***
[2026-03-06 14:09:07] total 616208
[2026-03-06 14:09:07] -rw-r--r-- 2 boinc boinc 443198419 Mar  6 12:53 ATLAS.root_0
[2026-03-06 14:09:07] -rw-r--r-- 2 boinc boinc    597958 Mar  6 12:53 input.tar.gz
[2026-03-06 14:09:07] -rw-r--r-- 2 boinc boinc     15845 Mar  6 12:53 start_atlas.sh
[2026-03-06 14:09:07] -rw------- 1 boinc boinc 186232199 Mar  6 14:07 HITS.pool.root.1
[2026-03-06 14:09:07] -rw------- 1 boinc boinc    942080 Mar  6 14:09 result.tar.gz
14:09:08 (1935630): run_atlas exited; CPU time 12702.831735
14:09:08 (1935630): called boinc_finish(0)

</stderr_txt>
]]>

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