Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:56:22 (2279226): wrapper (7.7.26015): starting
10:56:22 (2279226): wrapper: running run_atlas (--nthreads 4)
[2026-03-06 10:56:22] Arguments: --nthreads 4
[2026-03-06 10:56:22] Threads: 4
[2026-03-06 10:56:22] Checking for CVMFS
[2026-03-06 10:56:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-06 10:56:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-06 10:56:22] Running cvmfs_config stat atlas.cern.ch
[2026-03-06 10:56:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-06 10:56:22] 2.9.2.0 150552 12502 99920 156951 3 50 32194916 36864000 0 130560 0 5449329 99.984 465029 11726 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-06 10:56:22] CVMFS is ok
[2026-03-06 10:56:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-06 10:56:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-06 10:56:22] Further information can be found at the LHC@home message board.
[2026-03-06 10:56:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-06 10:56:22] Checking for apptainer binary...
[2026-03-06 10:56:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-06 10:56:22] Running /usr/bin/apptainer --version
[2026-03-06 10:56:22] apptainer version 1.4.1-1.1
[2026-03-06 10:56:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-06 10:56:22] thA317
[2026-03-06 10:56:22] apptainer works
[2026-03-06 10:56:22] Set ATHENA_PROC_NUMBER=4
[2026-03-06 10:56:22] Set ATHENA_CORE_NUMBER=4
[2026-03-06 10:56:22] Starting ATLAS job with PandaID=7038815121
[2026-03-06 10:56:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-06 12:04:55]  *** The last 200 lines of the pilot log: ***
[2026-03-06 12:04:55] 2026-03-06 11:04:23,454 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-06 12:04:55] 2026-03-06 11:04:23,454 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-06 12:04:55] 2026-03-06 11:04:23,454 | INFO     | job 7038815121 has completed (purged errors)
[2026-03-06 12:04:55] 2026-03-06 11:04:23,455 | INFO     | overall cleanup function is called
[2026-03-06 12:04:55] 2026-03-06 11:04:24,461 | INFO     | --- collectZombieJob: --- 10, [2287865]
[2026-03-06 12:04:55] 2026-03-06 11:04:24,461 | INFO     | zombie collector waiting for pid 2287865
[2026-03-06 12:04:55] 2026-03-06 11:04:24,461 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-06 12:04:55] 2026-03-06 11:04:24,461 | INFO     | collected zombie processes
[2026-03-06 12:04:55] 2026-03-06 11:04:24,462 | INFO     | will attempt to kill all subprocesses of pid=2287865
[2026-03-06 12:04:55] 2026-03-06 11:04:24,519 | INFO     | process IDs to be killed: [2287865] (in reverse order)
[2026-03-06 12:04:55] 2026-03-06 11:04:24,556 | WARNING  | found no corresponding commands to process id(s)
[2026-03-06 12:04:55] 2026-03-06 11:04:24,556 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-06 12:04:55] 2026-03-06 11:04:24,559 | INFO     | did not find any defunct processes belonging to 2287865
[2026-03-06 12:04:55] 2026-03-06 11:04:24,560 | INFO     | did not find any defunct processes belonging to 2287865
[2026-03-06 12:04:55] 2026-03-06 11:04:24,561 | INFO     | ready for new job
[2026-03-06 12:04:55] 2026-03-06 11:04:24,561 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-06 12:04:55] 2026-03-06 11:04:24,561 | INFO     | **************************************
[2026-03-06 12:04:55] 2026-03-06 11:04:24,561 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-06 12:04:55] 2026-03-06 11:04:24,561 | INFO     | **************************************
[2026-03-06 12:04:55] 2026-03-06 11:04:24,561 | INFO     | 
[2026-03-06 12:04:55] 2026-03-06 11:04:24,562 | INFO     | architecture information:
[2026-03-06 12:04:55] 2026-03-06 11:04:24,562 | INFO     | executing command: cat /etc/os-release
[2026-03-06 12:04:55] 2026-03-06 11:04:24,577 | INFO     | cat /etc/os-release:
[2026-03-06 12:04:55] NAME="CentOS Linux"
[2026-03-06 12:04:55] VERSION="7 (Core)"
[2026-03-06 12:04:55] ID="centos"
[2026-03-06 12:04:55] ID_LIKE="rhel fedora"
[2026-03-06 12:04:55] VERSION_ID="7"
[2026-03-06 12:04:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-06 12:04:55] ANSI_COLOR="0;31"
[2026-03-06 12:04:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-06 12:04:55] HOME_URL="https://www.centos.org/"
[2026-03-06 12:04:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-06 12:04:55] 
[2026-03-06 12:04:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-06 12:04:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-06 12:04:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-06 12:04:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-06 12:04:55] 
[2026-03-06 12:04:55] 2026-03-06 11:04:24,578 | INFO     | **************************************
[2026-03-06 12:04:55] 2026-03-06 11:04:25,081 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-06 12:04:55] 2026-03-06 11:04:25,096 | INFO     | sufficient remaining disk space (226268020736 B)
[2026-03-06 12:04:55] 2026-03-06 11:04:25,096 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-06 12:04:55] 2026-03-06 11:04:25,096 | INFO     | current server update state: UPDATING_FINAL
[2026-03-06 12:04:55] 2026-03-06 11:04:25,097 | INFO     | update_server=False
[2026-03-06 12:04:55] 2026-03-06 11:04:25,097 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-06 12:04:55] 2026-03-06 11:04:25,097 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-06 12:04:55] 2026-03-06 11:04:25,097 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-06 12:04:55] 2026-03-06 11:04:25,388 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-06 12:04:55] 2026-03-06 11:04:25,388 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-06 12:04:55] 2026-03-06 11:04:25,388 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-06 12:04:55] 2026-03-06 11:04:25,388 | INFO     | will abort loop
[2026-03-06 12:04:55] 2026-03-06 11:04:25,497 | INFO     | job.realtimelogging is not enabled
[2026-03-06 12:04:55] 2026-03-06 11:04:25,922 | INFO     | all data control threads have been joined
[2026-03-06 12:04:55] 2026-03-06 11:04:25,931 | INFO     | all job control threads have been joined
[2026-03-06 12:04:55] 2026-03-06 11:04:26,099 | INFO     | [job] retrieve thread has finished
[2026-03-06 12:04:55] 2026-03-06 11:04:26,102 | INFO     | [job] queue monitor thread has finished
[2026-03-06 12:04:55] 2026-03-06 11:04:26,109 | INFO     | [payload] execute_payloads thread has finished
[2026-03-06 12:04:55] 2026-03-06 11:04:26,359 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-06 12:04:55] 2026-03-06 11:04:26,394 | INFO     | [job] job monitor thread has finished
[2026-03-06 12:04:55] 2026-03-06 11:04:26,449 | INFO     | all payload control threads have been joined
[2026-03-06 12:04:55] 2026-03-06 11:04:26,483 | INFO     | [payload] validate_post thread has finished
[2026-03-06 12:04:55] 2026-03-06 11:04:26,502 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-06 12:04:55] 2026-03-06 11:04:26,791 | INFO     | [job] validate thread has finished
[2026-03-06 12:04:55] 2026-03-06 11:04:26,865 | INFO     | [job] create_data_payload thread has finished
[2026-03-06 12:04:55] 2026-03-06 11:04:26,911 | INFO     | [payload] validate_pre thread has finished
[2026-03-06 12:04:55] 2026-03-06 11:04:26,928 | INFO     | [data] control thread has finished
[2026-03-06 12:04:55] 2026-03-06 11:04:26,937 | INFO     | [job] control thread has finished
[2026-03-06 12:04:55] 2026-03-06 11:04:27,118 | INFO     | [data] copytool_in thread has finished
[2026-03-06 12:04:55] 2026-03-06 11:04:27,455 | INFO     | [payload] control thread has finished
[2026-03-06 12:04:55] 2026-03-06 11:04:27,554 | INFO     | [payload] failed_post thread has finished
[2026-03-06 12:04:55] 2026-03-06 11:04:28,365 | INFO     | [data] copytool_out thread has finished
[2026-03-06 12:04:55] 2026-03-06 11:04:29,103 | INFO     | [data] queue_monitor thread has finished
[2026-03-06 12:04:55] 2026-03-06 11:04:39,113 | INFO     | [monitor] cgroup control has ended
[2026-03-06 12:04:55] 2026-03-06 11:04:39,148 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140164778895168)>', '<ExcThread(monitor, started 140164261189376)>']
[2026-03-06 12:04:55] 2026-03-06 11:04:44,173 | INFO     | all workflow threads have been joined
[2026-03-06 12:04:55] 2026-03-06 11:04:44,174 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-06 12:04:55] 2026-03-06 11:04:44,174 | INFO     | traces error code: 0
[2026-03-06 12:04:55] 2026-03-06 11:04:44,174 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-06 12:04:55] 2026-03-06 11:04:55,420 | INFO     | PID=2283348 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-06 12:04:55] 2026-03-06 11:04:55,420 | INFO     | found 0 job(s) in 20 queues
[2026-03-06 12:04:55] 2026-03-06 11:04:55,420 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-06 12:04:55] 2026-03-06 11:04:55,420 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-06 12:04:55] 2026-03-06 11:04:55,420 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-06 12:04:55] 2026-03-06 11:04:55,420 | CRITICAL | thread 'MainThread' is not alive
[2026-03-06 12:04:55] 2026-03-06 11:04:55,420 | INFO     | [monitor] control thread has ended
[2026-03-06 12:04:55] 2026-03-06 11:04:55,509 [wrapper] ==== pilot stdout END ====
[2026-03-06 12:04:55] 2026-03-06 11:04:55,513 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-06 12:04:55] 2026-03-06 11:04:55,517 [wrapper] pilotpid: 2283348
[2026-03-06 12:04:55] 2026-03-06 11:04:55,521 [wrapper] Pilot exit status: 0
[2026-03-06 12:04:55] 2026-03-06 11:04:55,532 [wrapper] pandaids: 7038815121
[2026-03-06 12:04:55] 2026-03-06 11:04:55,558 [wrapper] cleanup supervisor_pilot 2294057 2283349
[2026-03-06 12:04:55] 2026-03-06 11:04:55,562 [wrapper] Test setup, not cleaning
[2026-03-06 12:04:55] 2026-03-06 11:04:55,566 [wrapper] apfmon messages muted
[2026-03-06 12:04:55] 2026-03-06 11:04:55,570 [wrapper] ==== wrapper stdout END ====
[2026-03-06 12:04:55] 2026-03-06 11:04:55,574 [wrapper] ==== wrapper stderr END ====
[2026-03-06 12:04:55]  *** Error codes and diagnostics ***
[2026-03-06 12:04:55]     "exeErrorCode": 0,
[2026-03-06 12:04:55]     "exeErrorDiag": "",
[2026-03-06 12:04:55]     "pilotErrorCode": 0,
[2026-03-06 12:04:55]     "pilotErrorDiag": "",
[2026-03-06 12:04:55]  *** Listing of results directory ***
[2026-03-06 12:04:55] total 619732
[2026-03-06 12:04:55] -rw-r--r-- 1 boinc boinc    584627 Mar  5 23:39 pilot3.tar.gz
[2026-03-06 12:04:55] -rwx------ 1 boinc boinc     36322 Mar  5 23:39 runpilot2-wrapper.sh
[2026-03-06 12:04:55] -rw-r--r-- 1 boinc boinc      5111 Mar  5 23:39 queuedata.json
[2026-03-06 12:04:55] -rw-r--r-- 1 boinc boinc       100 Mar  6 10:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-06 12:04:55] -rwxr-xr-x 1 boinc boinc      7986 Mar  6 10:56 run_atlas
[2026-03-06 12:04:55] -rw-r--r-- 1 boinc boinc       105 Mar  6 10:56 job.xml
[2026-03-06 12:04:55] -rw-r--r-- 2 boinc boinc 447462263 Mar  6 10:56 EVNT.46701403._000254.pool.root.1
[2026-03-06 12:04:55] -rw-r--r-- 2 boinc boinc    597954 Mar  6 10:56 input.tar.gz
[2026-03-06 12:04:55] -rw-r--r-- 2 boinc boinc     15845 Mar  6 10:56 start_atlas.sh
[2026-03-06 12:04:55] drwxrwx--x 2 boinc boinc      4096 Mar  6 10:56 shared
[2026-03-06 12:04:55] -rw-r--r-- 1 boinc boinc         0 Mar  6 10:56 boinc_setup_complete
[2026-03-06 12:04:55] -rw-r--r-- 1 boinc boinc      6376 Mar  6 10:56 init_data.xml
[2026-03-06 12:04:55] -rw-r--r-- 1 boinc boinc         0 Mar  6 10:56 boinc_lockfile
[2026-03-06 12:04:55] -rw-r--r-- 1 boinc boinc      2563 Mar  6 10:56 pandaJob.out
[2026-03-06 12:04:55] -rw------- 1 boinc boinc    998145 Mar  6 10:56 agis_schedconf.cvmfs.json
[2026-03-06 12:04:55] -rw------- 1 boinc boinc   1521291 Mar  6 10:56 agis_ddmendpoints.agis.ALL.json
[2026-03-06 12:04:55] -rw------- 1 boinc boinc       421 Mar  6 10:56 workernode_map.json
[2026-03-06 12:04:55] drwx------ 5 boinc boinc      4096 Mar  6 10:56 pilot3
[2026-03-06 12:04:55] -rw------- 1 boinc boinc 181496227 Mar  6 12:04 HITS.48955006._012666.pool.root.1
[2026-03-06 12:04:55] -rw-r--r-- 1 boinc boinc       530 Mar  6 12:04 boinc_task_state.xml
[2026-03-06 12:04:55] -rw------- 1 boinc boinc      1025 Mar  6 12:04 memory_monitor_summary.json
[2026-03-06 12:04:55] -rw------- 1 boinc boinc    260964 Mar  6 12:04 log.48955006._012666.job.log.tgz.1
[2026-03-06 12:04:55] -rw------- 1 boinc boinc      6312 Mar  6 12:04 heartbeat.json
[2026-03-06 12:04:55] -rw-r--r-- 1 boinc boinc      8192 Mar  6 12:04 boinc_mmap_file
[2026-03-06 12:04:55] -rw-r--r-- 1 boinc boinc        27 Mar  6 12:04 wrapper_checkpoint.txt
[2026-03-06 12:04:55] -rw------- 1 boinc boinc       817 Mar  6 12:04 pilotlog.txt
[2026-03-06 12:04:55] -rw------- 1 boinc boinc        95 Mar  6 12:04 pilot_heartbeat.json
[2026-03-06 12:04:55] -rw------- 1 boinc boinc    605603 Mar  6 12:04 log.48955006._012666.job.log.1
[2026-03-06 12:04:55] -rw------- 1 boinc boinc       357 Mar  6 12:04 output.list
[2026-03-06 12:04:55] -rw-r--r-- 1 boinc boinc       620 Mar  6 12:04 runtime_log
[2026-03-06 12:04:55] -rw------- 1 boinc boinc    880640 Mar  6 12:04 result.tar.gz
[2026-03-06 12:04:55] -rw-r--r-- 1 boinc boinc      8896 Mar  6 12:04 runtime_log.err
[2026-03-06 12:04:55] -rw------- 1 boinc boinc       657 Mar  6 12:04 QiCNDmtWWI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmmANLDm0t0uHn.diag
[2026-03-06 12:04:55] -rw-r--r-- 1 boinc boinc     11429 Mar  6 12:04 stderr.txt
[2026-03-06 12:04:55] HITS file was successfully produced:
[2026-03-06 12:04:55] -rw------- 1 boinc boinc 181496227 Mar  6 12:04 shared/HITS.pool.root.1
[2026-03-06 12:04:55]  *** Contents of shared directory: ***
[2026-03-06 12:04:55] total 615688
[2026-03-06 12:04:55] -rw-r--r-- 2 boinc boinc 447462263 Mar  6 10:56 ATLAS.root_0
[2026-03-06 12:04:55] -rw-r--r-- 2 boinc boinc    597954 Mar  6 10:56 input.tar.gz
[2026-03-06 12:04:55] -rw-r--r-- 2 boinc boinc     15845 Mar  6 10:56 start_atlas.sh
[2026-03-06 12:04:55] -rw------- 1 boinc boinc 181496227 Mar  6 12:04 HITS.pool.root.1
[2026-03-06 12:04:55] -rw------- 1 boinc boinc    880640 Mar  6 12:04 result.tar.gz
12:04:56 (2279226): run_atlas exited; CPU time 15226.695799
12:04:56 (2279226): called boinc_finish(0)

</stderr_txt>
]]>

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