Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:54:59 (1778724): wrapper (7.7.26015): starting
17:54:59 (1778724): wrapper: running run_atlas (--nthreads 8)
[2026-03-05 17:55:00] Arguments: --nthreads 8
[2026-03-05 17:55:00] Threads: 8
[2026-03-05 17:55:00] Checking for CVMFS
[2026-03-05 17:55:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-05 17:55:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-05 17:55:01] Running cvmfs_config stat atlas.cern.ch
[2026-03-05 17:55:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-05 17:55:02] 2.13.3.0 7385 173173 406216 156935 1 964 17145208 32503809 55619 16776704 0 1969682527 99.619 1962968044 46915 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-05 17:55:02] CVMFS is ok
[2026-03-05 17:55:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-05 17:55:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-05 17:55:02] Further information can be found at the LHC@home message board.
[2026-03-05 17:55:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 17:55:02] Checking for apptainer binary...
[2026-03-05 17:55:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-05 17:55:02] Running /usr/bin/apptainer --version
[2026-03-05 17:55:02] apptainer version 1.4.5-2.el9
[2026-03-05 17:55:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 17:55:03] c8-7-1.aglt2.org
[2026-03-05 17:55:03] apptainer works
[2026-03-05 17:55:03] Set ATHENA_PROC_NUMBER=8
[2026-03-05 17:55:03] Set ATHENA_CORE_NUMBER=8
[2026-03-05 17:55:03] Starting ATLAS job with PandaID=7042018155
[2026-03-05 17:55:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 20:16:56]  *** The last 200 lines of the pilot log: ***
[2026-03-05 20:16:56] 2026-03-06 01:16:15,178 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/7/workernode_map.json
[2026-03-05 20:16:56] 2026-03-06 01:16:15,179 | INFO     | this job has now completed (state=finished)
[2026-03-05 20:16:56] 2026-03-06 01:16:15,179 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-05 20:16:56] 2026-03-06 01:16:15,179 | INFO     | log transfer has been attempted: DONE
[2026-03-05 20:16:56] 2026-03-06 01:16:15,179 | INFO     | job 7042018155 has finished - writing final server update
[2026-03-05 20:16:56] 2026-03-06 01:16:15,179 | INFO     | total number of processed events: 400 (read)
[2026-03-05 20:16:56] 2026-03-06 01:16:15,323 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-7042018155/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 20:16:56] 2026-03-06 01:16:15,323 | INFO     | extracted standard info from prmon json
[2026-03-05 20:16:56] 2026-03-06 01:16:15,323 | INFO     | extracted standard memory fields from prmon json
[2026-03-05 20:16:56] 2026-03-06 01:16:15,323 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-05 20:16:56] 2026-03-06 01:16:15,324 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-05 20:16:56] 2026-03-06 01:16:15,324 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-05 20:16:56] 2026-03-06 01:16:15,381 | INFO     | fitting pss+swap vs Time
[2026-03-05 20:16:56] 2026-03-06 01:16:15,381 | INFO     | sum of square deviations: 762860277.5259277
[2026-03-05 20:16:56] 2026-03-06 01:16:15,381 | INFO     | sum of deviations: 37887444469.059235
[2026-03-05 20:16:56] 2026-03-06 01:16:15,381 | INFO     | mean x: 1772755672.0592592
[2026-03-05 20:16:56] 2026-03-06 01:16:15,381 | INFO     | mean y: 2365899.9925925927
[2026-03-05 20:16:56] 2026-03-06 01:16:15,382 | INFO     | intersect: -88041518492.81116
[2026-03-05 20:16:56] 2026-03-06 01:16:15,382 | INFO     | chi2: 4.265697286412566
[2026-03-05 20:16:56] 2026-03-06 01:16:15,382 | INFO     | sum of square deviations: 681187712.1230773
[2026-03-05 20:16:56] 2026-03-06 01:16:15,382 | INFO     | sum of deviations: 45123800983.999985
[2026-03-05 20:16:56] 2026-03-06 01:16:15,382 | INFO     | mean x: 1772755519.5538461
[2026-03-05 20:16:56] 2026-03-06 01:16:15,382 | INFO     | mean y: 2378911.0
[2026-03-05 20:16:56] 2026-03-06 01:16:15,382 | INFO     | intersect: -117429961446.86893
[2026-03-05 20:16:56] 2026-03-06 01:16:15,383 | INFO     | chi2: 3.4951095311218303
[2026-03-05 20:16:56] 2026-03-06 01:16:15,383 | INFO     | current chi2=3.4951095311218303 (change=18.06475479976679 %)
[2026-03-05 20:16:56] 2026-03-06 01:16:15,383 | INFO     | right removable region: 129
[2026-03-05 20:16:56] 2026-03-06 01:16:15,413 | INFO     | sum of square deviations: 681191190.0076928
[2026-03-05 20:16:56] 2026-03-06 01:16:15,413 | INFO     | sum of deviations: 1059057523.4000015
[2026-03-05 20:16:56] 2026-03-06 01:16:15,414 | INFO     | mean x: 1772755824.5615385
[2026-03-05 20:16:56] 2026-03-06 01:16:15,414 | INFO     | mean y: 2434283.2
[2026-03-05 20:16:56] 2026-03-06 01:16:15,414 | INFO     | intersect: -2753694129.3413725
[2026-03-05 20:16:56] 2026-03-06 01:16:15,414 | INFO     | chi2: 0.9758891926886559
[2026-03-05 20:16:56] 2026-03-06 01:16:15,414 | INFO     | current chi2=0.9758891926886559 (change=77.12239928986206 %)
[2026-03-05 20:16:56] 2026-03-06 01:16:15,414 | INFO     | sum of square deviations: 605568727.4879987
[2026-03-05 20:16:56] 2026-03-06 01:16:15,414 | INFO     | sum of deviations: -6642326484.575999
[2026-03-05 20:16:56] 2026-03-06 01:16:15,414 | INFO     | mean x: 1772755977.064
[2026-03-05 20:16:56] 2026-03-06 01:16:15,414 | INFO     | mean y: 2449715.072
[2026-03-05 20:16:56] 2026-03-06 01:16:15,414 | INFO     | intersect: 19447350752.132195
[2026-03-05 20:16:56] 2026-03-06 01:16:15,415 | INFO     | chi2: 0.8354044312278402
[2026-03-05 20:16:56] 2026-03-06 01:16:15,415 | INFO     | current chi2=0.8354044312278402 (change=14.395564835979838 %)
[2026-03-05 20:16:56] 2026-03-06 01:16:15,415 | INFO     | left removable region: 20
[2026-03-05 20:16:56] 2026-03-06 01:16:15,415 | INFO     | sum of square deviations: 401529696.917431
[2026-03-05 20:16:56] 2026-03-06 01:16:15,415 | INFO     | sum of deviations: 1453839017.9816518
[2026-03-05 20:16:56] 2026-03-06 01:16:15,415 | INFO     | mean x: 1772756099.027523
[2026-03-05 20:16:56] 2026-03-06 01:16:15,415 | INFO     | mean y: 2467753.339449541
[2026-03-05 20:16:56] 2026-03-06 01:16:15,415 | INFO     | intersect: -6416240516.35335
[2026-03-05 20:16:56] 2026-03-06 01:16:15,415 | INFO     | chi2: 0.00034397436883984336
[2026-03-05 20:16:56] 2026-03-06 01:16:15,415 | INFO     | current memory leak: 3.62 B/s (using 109 data points, chi2=0.00)
[2026-03-05 20:16:56] 2026-03-06 01:16:15,444 | INFO     | could have reported an average CPU frequency of 3777 MHz (8 samples)
[2026-03-05 20:16:56] 2026-03-06 01:16:15,444 | INFO     | ..............................
[2026-03-05 20:16:56] 2026-03-06 01:16:15,444 | INFO     | . Timing measurements:
[2026-03-05 20:16:56] 2026-03-06 01:16:15,444 | INFO     | . get job = 0 s
[2026-03-05 20:16:56] 2026-03-06 01:16:15,444 | INFO     | . initial setup = 60 s
[2026-03-05 20:16:56] 2026-03-06 01:16:15,444 | INFO     | . payload setup = 78 s
[2026-03-05 20:16:56] 2026-03-06 01:16:15,444 | INFO     | . stage-in = 0 s
[2026-03-05 20:16:56] 2026-03-06 01:16:15,444 | INFO     | . payload execution = 8234 s
[2026-03-05 20:16:56] 2026-03-06 01:16:15,444 | INFO     | . stage-out = 1 s
[2026-03-05 20:16:56] 2026-03-06 01:16:15,444 | INFO     | . log creation = 0 s
[2026-03-05 20:16:56] 2026-03-06 01:16:15,445 | INFO     | ..............................
[2026-03-05 20:16:56] 2026-03-06 01:16:16,060 | INFO     | 
[2026-03-05 20:16:56] 2026-03-06 01:16:16,060 | INFO     | job summary report
[2026-03-05 20:16:56] 2026-03-06 01:16:16,060 | INFO     | --------------------------------------------------
[2026-03-05 20:16:56] 2026-03-06 01:16:16,060 | INFO     | PanDA job id: 7042018155
[2026-03-05 20:16:56] 2026-03-06 01:16:16,060 | INFO     | task id: 48700858
[2026-03-05 20:16:56] 2026-03-06 01:16:16,060 | INFO     | errors: (none)
[2026-03-05 20:16:56] 2026-03-06 01:16:16,060 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-05 20:16:56] 2026-03-06 01:16:16,060 | INFO     | pilot state: finished 
[2026-03-05 20:16:56] 2026-03-06 01:16:16,060 | INFO     | transexitcode: 0
[2026-03-05 20:16:56] 2026-03-06 01:16:16,060 | INFO     | exeerrorcode: 0
[2026-03-05 20:16:56] 2026-03-06 01:16:16,060 | INFO     | exeerrordiag: 
[2026-03-05 20:16:56] 2026-03-06 01:16:16,060 | INFO     | exitcode: 0
[2026-03-05 20:16:56] 2026-03-06 01:16:16,060 | INFO     | exitmsg: OK
[2026-03-05 20:16:56] 2026-03-06 01:16:16,061 | INFO     | cpuconsumptiontime: 18224 s
[2026-03-05 20:16:56] 2026-03-06 01:16:16,061 | INFO     | nevents: 400
[2026-03-05 20:16:56] 2026-03-06 01:16:16,061 | INFO     | neventsw: 0
[2026-03-05 20:16:56] 2026-03-06 01:16:16,061 | INFO     | pid: 1878444
[2026-03-05 20:16:56] 2026-03-06 01:16:16,061 | INFO     | pgrp: 1878444
[2026-03-05 20:16:56] 2026-03-06 01:16:16,061 | INFO     | corecount: 8
[2026-03-05 20:16:56] 2026-03-06 01:16:16,061 | INFO     | event service: False
[2026-03-05 20:16:56] 2026-03-06 01:16:16,061 | INFO     | sizes: {0: 2294563, 2: 2295248, 3: 2295709, 14: 2295709, 8319: 2323440, 8320: 2323439, 8322: 2332705, 8323: 2332843}
[2026-03-05 20:16:56] 2026-03-06 01:16:16,061 | INFO     | --------------------------------------------------
[2026-03-05 20:16:56] 2026-03-06 01:16:16,061 | INFO     | 
[2026-03-05 20:16:56] 2026-03-06 01:16:16,061 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2026-03-05 20:16:56] 2026-03-06 01:16:16,269 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-05 20:16:56] 2026-03-06 01:16:16,269 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-05 20:16:56] 2026-03-06 01:16:16,269 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-05 20:16:56] 2026-03-06 01:16:16,269 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-05 20:16:56] 2026-03-06 01:16:16,269 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-05 20:16:56] 2026-03-06 01:16:16,269 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-05 20:16:56] 2026-03-06 01:16:16,270 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-05 20:16:56] 2026-03-06 01:16:16,270 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-05 20:16:56] 2026-03-06 01:16:16,270 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-05 20:16:56] 2026-03-06 01:16:16,270 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-05 20:16:56] 2026-03-06 01:16:16,270 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-05 20:16:56] 2026-03-06 01:16:16,270 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-05 20:16:56] 2026-03-06 01:16:16,270 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-05 20:16:56] 2026-03-06 01:16:16,270 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-05 20:16:56] 2026-03-06 01:16:16,270 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-05 20:16:56] 2026-03-06 01:16:16,270 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-05 20:16:56] 2026-03-06 01:16:16,270 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-05 20:16:56] 2026-03-06 01:16:16,270 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-05 20:16:56] 2026-03-06 01:16:16,270 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-05 20:16:56] 2026-03-06 01:16:16,270 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-05 20:16:56] 2026-03-06 01:16:16,270 | INFO     | job 7042018155 has completed (purged errors)
[2026-03-05 20:16:56] 2026-03-06 01:16:16,270 | INFO     | overall cleanup function is called
[2026-03-05 20:16:56] 2026-03-06 01:16:17,278 | INFO     | --- collectZombieJob: --- 10, [1878444]
[2026-03-05 20:16:56] 2026-03-06 01:16:17,278 | INFO     | zombie collector waiting for pid 1878444
[2026-03-05 20:16:56] 2026-03-06 01:16:17,278 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 20:16:56] 2026-03-06 01:16:17,278 | INFO     | collected zombie processes
[2026-03-05 20:16:56] 2026-03-06 01:16:17,278 | INFO     | will attempt to kill all subprocesses of pid=1878444
[2026-03-05 20:16:56] 2026-03-06 01:16:19,301 | INFO     | number of running child processes to parent process 1878444: 1
[2026-03-05 20:16:56] 2026-03-06 01:16:19,319 | INFO     | maximum number of monitored processes: 7
[2026-03-05 20:16:56] 2026-03-06 01:16:19,319 | INFO     | aborting job monitoring since job object (job id=7042018155) has expired
[2026-03-05 20:16:56] 2026-03-06 01:16:20,467 | INFO     | PID=1796369 has CPU usage=14.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-05 20:16:56] 2026-03-06 01:16:20,468 | INFO     | .. there are 80 such processes running
[2026-03-05 20:16:56] 2026-03-06 01:16:20,729 | INFO     | process IDs to be killed: [1878444] (in reverse order)
[2026-03-05 20:16:56] 2026-03-06 01:16:21,404 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 20:16:56] 2026-03-06 01:16:21,404 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 20:16:56] 2026-03-06 01:16:21,509 | INFO     | did not find any defunct processes belonging to 1878444
[2026-03-05 20:16:56] 2026-03-06 01:16:21,678 | INFO     | did not find any defunct processes belonging to 1878444
[2026-03-05 20:16:56] 2026-03-06 01:16:21,678 | INFO     | ready for new job
[2026-03-05 20:16:56] 2026-03-06 01:16:21,679 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 20:16:56] 2026-03-06 01:16:21,680 | INFO     | **************************************
[2026-03-05 20:16:56] 2026-03-06 01:16:21,680 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 20:16:56] 2026-03-06 01:16:21,680 | INFO     | **************************************
[2026-03-05 20:16:56] 2026-03-06 01:16:21,680 | INFO     | 
[2026-03-05 20:16:56] 2026-03-06 01:16:21,687 | INFO     | architecture information:
[2026-03-05 20:16:56] 2026-03-06 01:16:21,691 | INFO     | executing command: cat /etc/os-release
[2026-03-05 20:16:56] 2026-03-06 01:16:21,788 | INFO     | cat /etc/os-release:
[2026-03-05 20:16:56] NAME="CentOS Linux"
[2026-03-05 20:16:56] VERSION="7 (Core)"
[2026-03-05 20:16:56] ID="centos"
[2026-03-05 20:16:56] ID_LIKE="rhel fedora"
[2026-03-05 20:16:56] VERSION_ID="7"
[2026-03-05 20:16:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 20:16:56] ANSI_COLOR="0;31"
[2026-03-05 20:16:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 20:16:56] HOME_URL="https://www.centos.org/"
[2026-03-05 20:16:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 20:16:56] 
[2026-03-05 20:16:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 20:16:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 20:16:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 20:16:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 20:16:56] 
[2026-03-05 20:16:56] 2026-03-06 01:16:21,788 | INFO     | **************************************
[2026-03-05 20:16:56] 2026-03-06 01:16:22,291 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2026-03-05 20:16:56] 2026-03-06 01:16:22,418 | INFO     | sufficient remaining disk space (89736085504 B)
[2026-03-05 20:16:56] 2026-03-06 01:16:22,418 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 20:16:56] 2026-03-06 01:16:22,418 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 20:16:56] 2026-03-06 01:16:22,418 | INFO     | update_server=False
[2026-03-05 20:16:56] 2026-03-06 01:16:22,418 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 20:16:56] 2026-03-06 01:16:22,846 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 20:16:56] 2026-03-06 01:16:22,849 | INFO     | aborting loop
[2026-03-05 20:16:56] 2026-03-06 01:16:23,091 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 20:16:56] 2026-03-06 01:16:23,246 | INFO     | all data control threads have been joined
[2026-03-05 20:16:56] 2026-03-06 01:16:23,424 | INFO     | [job] retrieve thread has finished
[2026-03-05 20:16:56] 2026-03-06 01:16:23,450 | INFO     | all job control threads have been joined
[2026-03-05 20:16:56] 2026-03-06 01:16:23,542 | INFO     | all payload control threads have been joined
[2026-03-05 20:16:56] 2026-03-06 01:16:23,592 | INFO     | [payload] validate_post thread has finished
[2026-03-05 20:16:56] 2026-03-06 01:16:23,855 | INFO     | [job] job monitor thread has finished
[2026-03-05 20:16:56] 2026-03-06 01:16:23,894 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 20:16:56] 2026-03-06 01:16:24,025 | INFO     | [job] validate thread has finished
[2026-03-05 20:16:56] 2026-03-06 01:16:24,257 | INFO     | [data] control thread has finished
[2026-03-05 20:16:56] 2026-03-06 01:16:24,431 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 20:16:56] 2026-03-06 01:16:24,456 | INFO     | [job] control thread has finished
[2026-03-05 20:16:56] 2026-03-06 01:16:24,471 | INFO     | [payload] failed_post thread has finished
[2026-03-05 20:16:56] 2026-03-06 01:16:24,550 | INFO     | [payload] control thread has finished
[2026-03-05 20:16:56] 2026-03-06 01:16:24,558 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 20:16:56] 2026-03-06 01:16:24,839 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 20:16:56] 2026-03-06 01:16:24,885 | INFO     | [data] copytool_in thread has finished
[2026-03-05 20:16:56] 2026-03-06 01:16:24,895 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 20:16:56] 2026-03-06 01:16:25,098 | INFO     | [data] copytool_out thread has finished
[2026-03-05 20:16:56] 2026-03-06 01:16:25,742 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 20:16:56] 2026-03-06 01:16:25,903 | INFO     | [job] queue monitor thread has finished
[2026-03-05 20:16:56] 2026-03-06 01:16:29,751 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 20:16:56] 2026-03-06 01:16:32,335 | INFO     | [monitor] cgroup control has ended
[2026-03-05 20:16:56] 2026-03-06 01:16:32,876 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139979404580672)>', '<ExcThread(monitor, started 139979049117440)>']
[2026-03-05 20:16:56] 2026-03-06 01:16:37,902 | INFO     | all workflow threads have been joined
[2026-03-05 20:16:56] 2026-03-06 01:16:37,902 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 20:16:56] 2026-03-06 01:16:37,902 | INFO     | traces error code: 0
[2026-03-05 20:16:56] 2026-03-06 01:16:37,902 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 20:16:56] 2026-03-06 01:16:54,556 | INFO     | PID=1796369 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-05 20:16:56] 2026-03-06 01:16:54,557 | INFO     | .. there are 80 such processes running
[2026-03-05 20:16:56] 2026-03-06 01:16:54,557 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 20:16:56] 2026-03-06 01:16:54,557 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 20:16:56] 2026-03-06 01:16:54,557 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 20:16:56] 2026-03-06 01:16:54,557 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 20:16:56] 2026-03-06 01:16:54,557 | INFO     | [monitor] control thread has ended
[2026-03-05 20:16:56] 2026-03-06 01:16:54,987 [wrapper] ==== pilot stdout END ====
[2026-03-05 20:16:56] 2026-03-06 01:16:55,024 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 20:16:56] 2026-03-06 01:16:55,045 [wrapper] pilotpid: 1796369
[2026-03-05 20:16:56] 2026-03-06 01:16:55,064 [wrapper] Pilot exit status: 0
[2026-03-05 20:16:56] 2026-03-06 01:16:55,232 [wrapper] pandaids: 7042018155
[2026-03-05 20:16:56] 2026-03-06 01:16:55,565 [wrapper] cleanup supervisor_pilot 3371514 1796371
[2026-03-05 20:16:56] 2026-03-06 01:16:55,649 [wrapper] Test setup, not cleaning
[2026-03-05 20:16:56] 2026-03-06 01:16:55,702 [wrapper] apfmon messages muted
[2026-03-05 20:16:56] 2026-03-06 01:16:55,766 [wrapper] ==== wrapper stdout END ====
[2026-03-05 20:16:56] 2026-03-06 01:16:55,837 [wrapper] ==== wrapper stderr END ====
[2026-03-05 20:16:56]  *** Error codes and diagnostics ***
[2026-03-05 20:16:56]     "exeErrorCode": 0,
[2026-03-05 20:16:56]     "exeErrorDiag": "",
[2026-03-05 20:16:56]     "pilotErrorCode": 0,
[2026-03-05 20:16:56]     "pilotErrorDiag": "",
[2026-03-05 20:16:56]  *** Listing of results directory ***
[2026-03-05 20:16:56] total 329272
[2026-03-05 20:16:56] -rw-r--r--. 1 boincer umatlas      5111 Mar  5 12:40 queuedata.json
[2026-03-05 20:16:56] -rw-r--r--. 1 boincer umatlas    584627 Mar  5 12:40 pilot3.tar.gz
[2026-03-05 20:16:56] -rwx------. 1 boincer umatlas     36322 Mar  5 12:40 runpilot2-wrapper.sh
[2026-03-05 20:16:56] -rw-r--r--. 1 boincer umatlas       100 Mar  5 17:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 20:16:56] -rwxr-xr-x. 1 boincer umatlas      7986 Mar  5 17:54 run_atlas
[2026-03-05 20:16:56] -rw-r--r--. 1 boincer umatlas       105 Mar  5 17:54 job.xml
[2026-03-05 20:16:56] -rw-r--r--. 2 boincer umatlas 188216935 Mar  5 17:54 EVNT.48700856._000119.pool.root.1
[2026-03-05 20:16:56] -rw-r--r--. 2 boincer umatlas     15845 Mar  5 17:54 start_atlas.sh
[2026-03-05 20:16:56] drwxrwx--x. 2 boincer umatlas      4096 Mar  5 17:54 shared
[2026-03-05 20:16:56] -rw-r--r--. 2 boincer umatlas    597943 Mar  5 17:54 input.tar.gz
[2026-03-05 20:16:56] -rw-r--r--. 1 boincer umatlas         0 Mar  5 17:54 boinc_lockfile
[2026-03-05 20:16:56] -rw-r--r--. 1 boincer umatlas      2521 Mar  5 17:55 pandaJob.out
[2026-03-05 20:16:56] -rw-------. 1 boincer umatlas        57 Mar  5 17:55 setup.sh.local
[2026-03-05 20:16:56] -rw-------. 1 boincer umatlas    998560 Mar  5 17:56 agis_schedconf.cvmfs.json
[2026-03-05 20:16:56] -rw-------. 1 boincer umatlas   1521291 Mar  5 17:56 agis_ddmendpoints.agis.ALL.json
[2026-03-05 20:16:56] -rw-------. 1 boincer umatlas       429 Mar  5 17:57 workernode_map.json
[2026-03-05 20:16:56] drwx------. 5 boincer umatlas      4096 Mar  5 17:57 pilot3
[2026-03-05 20:16:56] -rw-r--r--. 1 boincer umatlas      7170 Mar  5 20:12 init_data.xml
[2026-03-05 20:16:56] -rw-------. 1 boincer umatlas 142313788 Mar  5 20:15 HITS.48700858._003433.pool.root.1
[2026-03-05 20:16:56] -rw-r--r--. 1 boincer umatlas       529 Mar  5 20:15 boinc_task_state.xml
[2026-03-05 20:16:56] -rw-------. 1 boincer umatlas      1056 Mar  5 20:16 memory_monitor_summary.json
[2026-03-05 20:16:56] -rw-------. 1 boincer umatlas        95 Mar  5 20:16 pilot_heartbeat.json
[2026-03-05 20:16:56] -rw-------. 1 boincer umatlas    360580 Mar  5 20:16 log.48700858._003433.job.log.tgz.1
[2026-03-05 20:16:56] -rw-------. 1 boincer umatlas      6332 Mar  5 20:16 heartbeat.json
[2026-03-05 20:16:56] -rw-r--r--. 1 boincer umatlas      8192 Mar  5 20:16 boinc_mmap_file
[2026-03-05 20:16:56] -rw-r--r--. 1 boincer umatlas        27 Mar  5 20:16 wrapper_checkpoint.txt
[2026-03-05 20:16:56] -rw-------. 1 boincer umatlas       823 Mar  5 20:16 pilotlog.txt
[2026-03-05 20:16:56] -rw-------. 1 boincer umatlas    994164 Mar  5 20:16 log.48700858._003433.job.log.1
[2026-03-05 20:16:56] -rw-------. 1 boincer umatlas       357 Mar  5 20:16 output.list
[2026-03-05 20:16:56] -rw-r--r--. 1 boincer umatlas       620 Mar  5 20:16 runtime_log
[2026-03-05 20:16:56] -rw-------. 1 boincer umatlas   1372160 Mar  5 20:16 result.tar.gz
[2026-03-05 20:16:56] -rw-r--r--. 1 boincer umatlas      9331 Mar  5 20:16 runtime_log.err
[2026-03-05 20:16:56] -rw-------. 1 boincer umatlas       654 Mar  5 20:16 d3ZMDmQrRI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmlROLDmOuVR7n.diag
[2026-03-05 20:16:56] -rw-r--r--. 1 boincer umatlas     21382 Mar  5 20:16 stderr.txt
[2026-03-05 20:16:56] HITS file was successfully produced:
[2026-03-05 20:16:56] -rw-------. 1 boincer umatlas 142313788 Mar  5 20:15 shared/HITS.pool.root.1
[2026-03-05 20:16:56]  *** Contents of shared directory: ***
[2026-03-05 20:16:56] total 324732
[2026-03-05 20:16:56] -rw-r--r--. 2 boincer umatlas 188216935 Mar  5 17:54 ATLAS.root_0
[2026-03-05 20:16:56] -rw-r--r--. 2 boincer umatlas     15845 Mar  5 17:54 start_atlas.sh
[2026-03-05 20:16:56] -rw-r--r--. 2 boincer umatlas    597943 Mar  5 17:54 input.tar.gz
[2026-03-05 20:16:56] -rw-------. 1 boincer umatlas 142313788 Mar  5 20:15 HITS.pool.root.1
[2026-03-05 20:16:56] -rw-------. 1 boincer umatlas   1372160 Mar  5 20:16 result.tar.gz
20:16:58 (1778724): run_atlas exited; CPU time 18581.726604
20:16:58 (1778724): called boinc_finish(0)

</stderr_txt>
]]>

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