Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:36:02 (2212350): wrapper (7.7.26015): starting
08:36:02 (2212350): wrapper: running run_atlas (--nthreads 4)
[2026-03-06 08:36:02] Arguments: --nthreads 4
[2026-03-06 08:36:02] Threads: 4
[2026-03-06 08:36:02] Checking for CVMFS
[2026-03-06 08:36:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-06 08:36:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-06 08:36:03] Running cvmfs_config stat atlas.cern.ch
[2026-03-06 08:36:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-06 08:36:03] 2.9.2.0 16149 12472 98660 156949 2 49 28950060 36864001 0 130560 0 6260347 99.985 463825 14538 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-06 08:36:03] CVMFS is ok
[2026-03-06 08:36:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-06 08:36:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-06 08:36:03] Further information can be found at the LHC@home message board.
[2026-03-06 08:36:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-06 08:36:03] Checking for apptainer binary...
[2026-03-06 08:36:03] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-06 08:36:03] Running /usr/bin/apptainer --version
[2026-03-06 08:36:03] apptainer version 1.4.1-1.1
[2026-03-06 08:36:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-06 08:36:03] thA369a
[2026-03-06 08:36:03] apptainer works
[2026-03-06 08:36:03] Set ATHENA_PROC_NUMBER=4
[2026-03-06 08:36:03] Set ATHENA_CORE_NUMBER=4
[2026-03-06 08:36:03] Starting ATLAS job with PandaID=7037107847
[2026-03-06 08:36:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-06 09:46:33]  *** The last 200 lines of the pilot log: ***
[2026-03-06 09:46:33] 2026-03-06 08:46:03,123 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-06 09:46:33] 2026-03-06 08:46:03,123 | INFO     | collected zombie processes
[2026-03-06 09:46:33] 2026-03-06 08:46:03,123 | INFO     | will attempt to kill all subprocesses of pid=2220957
[2026-03-06 09:46:33] 2026-03-06 08:46:03,166 | INFO     | process IDs to be killed: [2220957] (in reverse order)
[2026-03-06 09:46:33] 2026-03-06 08:46:03,193 | WARNING  | found no corresponding commands to process id(s)
[2026-03-06 09:46:33] 2026-03-06 08:46:03,193 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-06 09:46:33] 2026-03-06 08:46:03,194 | INFO     | did not find any defunct processes belonging to 2220957
[2026-03-06 09:46:33] 2026-03-06 08:46:03,195 | INFO     | did not find any defunct processes belonging to 2220957
[2026-03-06 09:46:33] 2026-03-06 08:46:03,195 | INFO     | ready for new job
[2026-03-06 09:46:33] 2026-03-06 08:46:03,195 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-06 09:46:33] 2026-03-06 08:46:03,196 | INFO     | **************************************
[2026-03-06 09:46:33] 2026-03-06 08:46:03,196 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-06 09:46:33] 2026-03-06 08:46:03,196 | INFO     | **************************************
[2026-03-06 09:46:33] 2026-03-06 08:46:03,196 | INFO     | 
[2026-03-06 09:46:33] 2026-03-06 08:46:03,197 | INFO     | architecture information:
[2026-03-06 09:46:33] 2026-03-06 08:46:03,197 | INFO     | executing command: cat /etc/os-release
[2026-03-06 09:46:33] 2026-03-06 08:46:03,207 | INFO     | cat /etc/os-release:
[2026-03-06 09:46:33] NAME="CentOS Linux"
[2026-03-06 09:46:33] VERSION="7 (Core)"
[2026-03-06 09:46:33] ID="centos"
[2026-03-06 09:46:33] ID_LIKE="rhel fedora"
[2026-03-06 09:46:33] VERSION_ID="7"
[2026-03-06 09:46:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-06 09:46:33] ANSI_COLOR="0;31"
[2026-03-06 09:46:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-06 09:46:33] HOME_URL="https://www.centos.org/"
[2026-03-06 09:46:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-06 09:46:33] 
[2026-03-06 09:46:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-06 09:46:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-06 09:46:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-06 09:46:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-06 09:46:33] 
[2026-03-06 09:46:33] 2026-03-06 08:46:03,207 | INFO     | **************************************
[2026-03-06 09:46:33] 2026-03-06 08:46:03,710 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-06 09:46:33] 2026-03-06 08:46:03,725 | INFO     | sufficient remaining disk space (228693377024 B)
[2026-03-06 09:46:33] 2026-03-06 08:46:03,725 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-06 09:46:33] 2026-03-06 08:46:03,725 | INFO     | current server update state: UPDATING_FINAL
[2026-03-06 09:46:33] 2026-03-06 08:46:03,725 | INFO     | update_server=False
[2026-03-06 09:46:33] 2026-03-06 08:46:03,725 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-06 09:46:33] 2026-03-06 08:46:03,725 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-06 09:46:33] 2026-03-06 08:46:03,725 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-06 09:46:33] 2026-03-06 08:46:03,769 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-06 09:46:33] 2026-03-06 08:46:03,769 | INFO     | aborting loop
[2026-03-06 09:46:33] 2026-03-06 08:46:04,368 | INFO     | all data control threads have been joined
[2026-03-06 09:46:33] 2026-03-06 08:46:04,569 | INFO     | all job control threads have been joined
[2026-03-06 09:46:33] 2026-03-06 08:46:04,730 | INFO     | [job] retrieve thread has finished
[2026-03-06 09:46:33] 2026-03-06 08:46:04,731 | INFO     | [job] queue monitor thread has finished
[2026-03-06 09:46:33] 2026-03-06 08:46:04,769 | INFO     | [payload] validate_pre thread has finished
[2026-03-06 09:46:33] 2026-03-06 08:46:04,774 | INFO     | [job] job monitor thread has finished
[2026-03-06 09:46:33] 2026-03-06 08:46:04,871 | INFO     | all payload control threads have been joined
[2026-03-06 09:46:33] 2026-03-06 08:46:04,880 | INFO     | [data] copytool_in thread has finished
[2026-03-06 09:46:33] 2026-03-06 08:46:04,989 | INFO     | [payload] validate_post thread has finished
[2026-03-06 09:46:33] 2026-03-06 08:46:05,374 | INFO     | [data] control thread has finished
[2026-03-06 09:46:33] 2026-03-06 08:46:05,414 | INFO     | [payload] failed_post thread has finished
[2026-03-06 09:46:33] 2026-03-06 08:46:05,509 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-06 09:46:33] 2026-03-06 08:46:05,575 | INFO     | [job] control thread has finished
[2026-03-06 09:46:33] 2026-03-06 08:46:05,731 | INFO     | [data] copytool_out thread has finished
[2026-03-06 09:46:33] 2026-03-06 08:46:05,877 | INFO     | [payload] control thread has finished
[2026-03-06 09:46:33] 2026-03-06 08:46:06,061 | INFO     | [payload] execute_payloads thread has finished
[2026-03-06 09:46:33] 2026-03-06 08:46:06,104 | INFO     | [job] validate thread has finished
[2026-03-06 09:46:33] 2026-03-06 08:46:06,223 | INFO     | [job] create_data_payload thread has finished
[2026-03-06 09:46:33] 2026-03-06 08:46:09,516 | INFO     | [data] queue_monitor thread has finished
[2026-03-06 09:46:33] 2026-03-06 08:46:14,403 | INFO     | job.realtimelogging is not enabled
[2026-03-06 09:46:33] 2026-03-06 08:46:15,409 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-06 09:46:33] 2026-03-06 08:46:18,433 | INFO     | [monitor] cgroup control has ended
[2026-03-06 09:46:33] 2026-03-06 08:46:18,730 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140042002773824)>', '<ExcThread(monitor, started 140041124816640)>']
[2026-03-06 09:46:33] 2026-03-06 08:46:23,744 | INFO     | all workflow threads have been joined
[2026-03-06 09:46:33] 2026-03-06 08:46:23,744 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-06 09:46:33] 2026-03-06 08:46:23,744 | INFO     | traces error code: 0
[2026-03-06 09:46:33] 2026-03-06 08:46:23,744 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-06 09:46:33] 2026-03-06 08:46:33,322 | INFO     | PID=2216450 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-06 09:46:33] 2026-03-06 08:46:33,323 | INFO     | found 0 job(s) in 20 queues
[2026-03-06 09:46:33] 2026-03-06 08:46:33,323 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-06 09:46:33] 2026-03-06 08:46:33,323 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-06 09:46:33] 2026-03-06 08:46:33,323 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-06 09:46:33] 2026-03-06 08:46:33,323 | INFO     | [monitor] control thread has ended
[2026-03-06 09:46:33] 2026-03-06 08:46:33,372 [wrapper] ==== pilot stdout END ====
[2026-03-06 09:46:33] 2026-03-06 08:46:33,375 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-06 09:46:33] 2026-03-06 08:46:33,378 [wrapper] pilotpid: 2216450
[2026-03-06 09:46:33] 2026-03-06 08:46:33,380 [wrapper] Pilot exit status: 0
[2026-03-06 09:46:33] 2026-03-06 08:46:33,388 [wrapper] pandaids: 7037107847
[2026-03-06 09:46:33] 2026-03-06 08:46:33,406 [wrapper] cleanup supervisor_pilot 2225727 2216451
[2026-03-06 09:46:33] 2026-03-06 08:46:33,408 [wrapper] Test setup, not cleaning
[2026-03-06 09:46:33] 2026-03-06 08:46:33,411 [wrapper] apfmon messages muted
[2026-03-06 09:46:33] 2026-03-06 08:46:33,414 [wrapper] ==== wrapper stdout END ====
[2026-03-06 09:46:33] 2026-03-06 08:46:33,416 [wrapper] ==== wrapper stderr END ====
[2026-03-06 09:46:33]  *** Error codes and diagnostics ***
[2026-03-06 09:46:33]     "exeErrorCode": 0,
[2026-03-06 09:46:33]     "exeErrorDiag": "",
[2026-03-06 09:46:33]     "pilotErrorCode": 0,
[2026-03-06 09:46:33]     "pilotErrorDiag": "",
[2026-03-06 09:46:33]  *** Listing of results directory ***
[2026-03-06 09:46:33] total 482944
[2026-03-06 09:46:33] -rw-r--r-- 1 boinc boinc      5111 Mar  4 03:44 queuedata.json
[2026-03-06 09:46:33] -rw-r--r-- 1 boinc boinc    584627 Mar  4 03:44 pilot3.tar.gz
[2026-03-06 09:46:33] -rwx------ 1 boinc boinc     36322 Mar  4 03:45 runpilot2-wrapper.sh
[2026-03-06 09:46:33] -rw-r--r-- 1 boinc boinc       100 Mar  6 08:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-06 09:46:33] -rwxr-xr-x 1 boinc boinc      7986 Mar  6 08:36 run_atlas
[2026-03-06 09:46:33] -rw-r--r-- 1 boinc boinc       105 Mar  6 08:36 job.xml
[2026-03-06 09:46:33] -rw-r--r-- 2 boinc boinc 277978224 Mar  6 08:36 EVNT.48220221._000188.pool.root.1
[2026-03-06 09:46:33] -rw-r--r-- 2 boinc boinc    597957 Mar  6 08:36 input.tar.gz
[2026-03-06 09:46:33] -rw-r--r-- 2 boinc boinc     15845 Mar  6 08:36 start_atlas.sh
[2026-03-06 09:46:33] drwxrwx--x 2 boinc boinc      4096 Mar  6 08:36 shared
[2026-03-06 09:46:33] -rw-r--r-- 1 boinc boinc         0 Mar  6 08:36 boinc_setup_complete
[2026-03-06 09:46:33] -rw-r--r-- 1 boinc boinc      6443 Mar  6 08:36 init_data.xml
[2026-03-06 09:46:33] -rw-r--r-- 1 boinc boinc         0 Mar  6 08:36 boinc_lockfile
[2026-03-06 09:46:33] -rw-r--r-- 1 boinc boinc      2561 Mar  6 08:36 pandaJob.out
[2026-03-06 09:46:33] -rw------- 1 boinc boinc    998137 Mar  6 08:36 agis_schedconf.cvmfs.json
[2026-03-06 09:46:33] -rw------- 1 boinc boinc   1521291 Mar  6 08:36 agis_ddmendpoints.agis.ALL.json
[2026-03-06 09:46:33] -rw------- 1 boinc boinc       418 Mar  6 08:36 workernode_map.json
[2026-03-06 09:46:33] drwx------ 5 boinc boinc      4096 Mar  6 08:36 pilot3
[2026-03-06 09:46:33] -rw------- 1 boinc boinc 210904528 Mar  6 09:45 HITS.48838586._004650.pool.root.1
[2026-03-06 09:46:33] -rw-r--r-- 1 boinc boinc       530 Mar  6 09:45 boinc_task_state.xml
[2026-03-06 09:46:33] -rw------- 1 boinc boinc      1015 Mar  6 09:45 memory_monitor_summary.json
[2026-03-06 09:46:33] -rw------- 1 boinc boinc    244823 Mar  6 09:45 log.48838586._004650.job.log.tgz.1
[2026-03-06 09:46:33] -rw------- 1 boinc boinc      6304 Mar  6 09:46 heartbeat.json
[2026-03-06 09:46:33] -rw-r--r-- 1 boinc boinc      8192 Mar  6 09:46 boinc_mmap_file
[2026-03-06 09:46:33] -rw-r--r-- 1 boinc boinc        27 Mar  6 09:46 wrapper_checkpoint.txt
[2026-03-06 09:46:33] -rw------- 1 boinc boinc       747 Mar  6 09:46 pilotlog.txt
[2026-03-06 09:46:33] -rw------- 1 boinc boinc        95 Mar  6 09:46 pilot_heartbeat.json
[2026-03-06 09:46:33] -rw------- 1 boinc boinc    622601 Mar  6 09:46 log.48838586._004650.job.log.1
[2026-03-06 09:46:33] -rw------- 1 boinc boinc       357 Mar  6 09:46 output.list
[2026-03-06 09:46:33] -rw-r--r-- 1 boinc boinc       620 Mar  6 09:46 runtime_log
[2026-03-06 09:46:33] -rw------- 1 boinc boinc    880640 Mar  6 09:46 result.tar.gz
[2026-03-06 09:46:33] -rw-r--r-- 1 boinc boinc      8901 Mar  6 09:46 runtime_log.err
[2026-03-06 09:46:33] -rw------- 1 boinc boinc       658 Mar  6 09:46 q5qLDmXPrH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDme7ILDmWBkdLo.diag
[2026-03-06 09:46:33] -rw-r--r-- 1 boinc boinc     10506 Mar  6 09:46 stderr.txt
[2026-03-06 09:46:33] HITS file was successfully produced:
[2026-03-06 09:46:33] -rw------- 1 boinc boinc 210904528 Mar  6 09:45 shared/HITS.pool.root.1
[2026-03-06 09:46:33]  *** Contents of shared directory: ***
[2026-03-06 09:46:33] total 478896
[2026-03-06 09:46:33] -rw-r--r-- 2 boinc boinc 277978224 Mar  6 08:36 ATLAS.root_0
[2026-03-06 09:46:33] -rw-r--r-- 2 boinc boinc    597957 Mar  6 08:36 input.tar.gz
[2026-03-06 09:46:33] -rw-r--r-- 2 boinc boinc     15845 Mar  6 08:36 start_atlas.sh
[2026-03-06 09:46:33] -rw------- 1 boinc boinc 210904528 Mar  6 09:45 HITS.pool.root.1
[2026-03-06 09:46:33] -rw------- 1 boinc boinc    880640 Mar  6 09:46 result.tar.gz
09:46:34 (2212350): run_atlas exited; CPU time 15798.950688
09:46:34 (2212350): called boinc_finish(0)

</stderr_txt>
]]>

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