Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:38:07 (4126042): wrapper (7.7.26015): starting
14:38:07 (4126042): wrapper: running run_atlas (--nthreads 8)
[2026-03-05 14:38:07] Arguments: --nthreads 8
[2026-03-05 14:38:07] Threads: 8
[2026-03-05 14:38:07] Checking for CVMFS
[2026-03-05 14:38:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-05 14:38:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-05 14:38:08] Running cvmfs_config stat atlas.cern.ch
[2026-03-05 14:38:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-05 14:38:09] 2.13.3.0 7314 172979 293836 156931 0 483 31524100 40960001 42568 16776704 0 2081184695 99.726 1467684869 47791 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-05 14:38:09] CVMFS is ok
[2026-03-05 14:38:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-05 14:38:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-05 14:38:09] Further information can be found at the LHC@home message board.
[2026-03-05 14:38:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 14:38:09] Checking for apptainer binary...
[2026-03-05 14:38:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-05 14:38:09] Running /usr/bin/apptainer --version
[2026-03-05 14:38:09] apptainer version 1.4.5-2.el9
[2026-03-05 14:38:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 14:38:10] c8-16-1.aglt2.org
[2026-03-05 14:38:10] apptainer works
[2026-03-05 14:38:10] Set ATHENA_PROC_NUMBER=8
[2026-03-05 14:38:10] Set ATHENA_CORE_NUMBER=8
[2026-03-05 14:38:10] Starting ATLAS job with PandaID=7038578322
[2026-03-05 14:38:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 16:20:39]  *** The last 200 lines of the pilot log: ***
[2026-03-05 16:20:39]  scope=mc23_13p6TeV
[2026-03-05 16:20:39]  status=None
[2026-03-05 16:20:39]  status_code=0
[2026-03-05 16:20:39]  storage_token=
[2026-03-05 16:20:39]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-7038578322/log.48700858._003131.job.log.tgz.1
[2026-03-05 16:20:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/28/fb/log.48700858._003131.job.log.tgz.1
[2026-03-05 16:20:39]  workdir=None
[2026-03-05 16:20:39] ]
[2026-03-05 16:20:39] 2026-03-05 21:20:03,086 | INFO     | transferring file log.48700858._003131.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-7038578322/log.48700858._003131.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-03-05 16:20:39] 2026-03-05 21:20:03,086 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-7038578322/log.48700858._003131.job.log.tgz.1 /tmp/boinchome/slots/1/log.48700858._003131.job
[2026-03-05 16:20:39] 2026-03-05 21:20:03,172 | INFO     | adding to output.list: log.48700858._003131.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/28/fb/log.48700858._003131.job.log.tg
[2026-03-05 16:20:39] 2026-03-05 21:20:03,173 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-05 16:20:39] 2026-03-05 21:20:03,173 | INFO     | summary of transferred files:
[2026-03-05 16:20:39] 2026-03-05 21:20:03,173 | INFO     |  -- lfn=log.48700858._003131.job.log.tgz.1, status_code=0, status=transferred
[2026-03-05 16:20:39] 2026-03-05 21:20:03,173 | INFO     | stage-out finished correctly
[2026-03-05 16:20:39] 2026-03-05 21:20:03,317 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-05 16:20:39] 2026-03-05 21:20:03,558 | INFO     | time since job start (5991s) is within the limit (349056.0s)
[2026-03-05 16:20:39] 2026-03-05 21:20:04,006 | WARNING  | process 4160506 can no longer be monitored (due to stat problems) - aborting
[2026-03-05 16:20:39] 2026-03-05 21:20:04,006 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-7038578322/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 16:20:39] 2026-03-05 21:20:04,014 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3177722 B
[2026-03-05 16:20:39] 2026-03-05 21:20:04,014 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16319 B
[2026-03-05 16:20:39] 2026-03-05 21:20:04,014 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-03-05 16:20:39] 2026-03-05 21:20:04,060 | INFO     | sufficient remaining disk space (167298203648 B)
[2026-03-05 16:20:39] 2026-03-05 21:20:04,061 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-05 16:20:39] 2026-03-05 21:20:04,061 | INFO     | size of work directory /tmp/boinchome/slots/1/PanDA_Pilot-7038578322: 3485437 B (within 5033164800 B limit)
[2026-03-05 16:20:39] 2026-03-05 21:20:04,061 | INFO     | pfn file=/tmp/boinchome/slots/1/PanDA_Pilot-7038578322/HITS.48700858._003131.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-05 16:20:39] 2026-03-05 21:20:04,061 | INFO     | total size of present files: 0 B (workdir size: 3485437 B)
[2026-03-05 16:20:39] 2026-03-05 21:20:04,061 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/1/PanDA_Pilot-7038578322/HITS.48700858._003131.pool.root.1 since it does not exist
[2026-03-05 16:20:39] 2026-03-05 21:20:04,413 | INFO     | job 7038578322 has state=finished
[2026-03-05 16:20:39] 2026-03-05 21:20:04,413 | INFO     | preparing for final server update for job 7038578322 in state='finished'
[2026-03-05 16:20:39] 2026-03-05 21:20:04,413 | INFO     | reading metadata from: /tmp/boinchome/slots/1/PanDA_Pilot-7038578322/jobReport.json
[2026-03-05 16:20:39] 2026-03-05 21:20:04,415 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/1/workernode_map.json
[2026-03-05 16:20:39] 2026-03-05 21:20:04,415 | INFO     | this job has now completed (state=finished)
[2026-03-05 16:20:39] 2026-03-05 21:20:04,415 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-05 16:20:39] 2026-03-05 21:20:04,416 | INFO     | log transfer has been attempted: DONE
[2026-03-05 16:20:39] 2026-03-05 21:20:04,416 | INFO     | job 7038578322 has finished - writing final server update
[2026-03-05 16:20:39] 2026-03-05 21:20:04,416 | INFO     | total number of processed events: 400 (read)
[2026-03-05 16:20:39] 2026-03-05 21:20:04,462 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-7038578322/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 16:20:39] 2026-03-05 21:20:04,466 | INFO     | extracted standard info from prmon json
[2026-03-05 16:20:39] 2026-03-05 21:20:04,466 | INFO     | extracted standard memory fields from prmon json
[2026-03-05 16:20:39] 2026-03-05 21:20:04,466 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-05 16:20:39] 2026-03-05 21:20:04,466 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-05 16:20:39] 2026-03-05 21:20:04,466 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-05 16:20:39] 2026-03-05 21:20:04,468 | INFO     | fitting pss+swap vs Time
[2026-03-05 16:20:39] 2026-03-05 21:20:04,468 | INFO     | sum of square deviations: 226022786.22222188
[2026-03-05 16:20:39] 2026-03-05 21:20:04,468 | INFO     | sum of deviations: -4071625095.777778
[2026-03-05 16:20:39] 2026-03-05 21:20:04,468 | INFO     | mean x: 1772742736.5555556
[2026-03-05 16:20:39] 2026-03-05 21:20:04,468 | INFO     | mean y: 2526813.2555555557
[2026-03-05 16:20:39] 2026-03-05 21:20:04,468 | INFO     | intersect: 31937111529.952263
[2026-03-05 16:20:39] 2026-03-05 21:20:04,468 | INFO     | chi2: 0.11061603418982963
[2026-03-05 16:20:39] 2026-03-05 21:20:04,468 | INFO     | current memory leak: -18.01 B/s (using 90 data points, chi2=0.11)
[2026-03-05 16:20:39] 2026-03-05 21:20:04,468 | INFO     | could have reported an average CPU frequency of 3799 MHz (7 samples)
[2026-03-05 16:20:39] 2026-03-05 21:20:04,469 | INFO     | ..............................
[2026-03-05 16:20:39] 2026-03-05 21:20:04,469 | INFO     | . Timing measurements:
[2026-03-05 16:20:39] 2026-03-05 21:20:04,469 | INFO     | . get job = 0 s
[2026-03-05 16:20:39] 2026-03-05 21:20:04,469 | INFO     | . initial setup = 39 s
[2026-03-05 16:20:39] 2026-03-05 21:20:04,469 | INFO     | . payload setup = 51 s
[2026-03-05 16:20:39] 2026-03-05 21:20:04,469 | INFO     | . stage-in = 0 s
[2026-03-05 16:20:39] 2026-03-05 21:20:04,469 | INFO     | . payload execution = 5918 s
[2026-03-05 16:20:39] 2026-03-05 21:20:04,469 | INFO     | . stage-out = 1 s
[2026-03-05 16:20:39] 2026-03-05 21:20:04,469 | INFO     | . log creation = 0 s
[2026-03-05 16:20:39] 2026-03-05 21:20:04,469 | INFO     | ..............................
[2026-03-05 16:20:39] 2026-03-05 21:20:04,951 | INFO     | 
[2026-03-05 16:20:39] 2026-03-05 21:20:04,951 | INFO     | job summary report
[2026-03-05 16:20:39] 2026-03-05 21:20:04,951 | INFO     | --------------------------------------------------
[2026-03-05 16:20:39] 2026-03-05 21:20:04,951 | INFO     | PanDA job id: 7038578322
[2026-03-05 16:20:39] 2026-03-05 21:20:04,951 | INFO     | task id: 48700858
[2026-03-05 16:20:39] 2026-03-05 21:20:04,951 | INFO     | errors: (none)
[2026-03-05 16:20:39] 2026-03-05 21:20:04,951 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-05 16:20:39] 2026-03-05 21:20:04,951 | INFO     | pilot state: finished 
[2026-03-05 16:20:39] 2026-03-05 21:20:04,951 | INFO     | transexitcode: 0
[2026-03-05 16:20:39] 2026-03-05 21:20:04,951 | INFO     | exeerrorcode: 0
[2026-03-05 16:20:39] 2026-03-05 21:20:04,951 | INFO     | exeerrordiag: 
[2026-03-05 16:20:39] 2026-03-05 21:20:04,951 | INFO     | exitcode: 0
[2026-03-05 16:20:39] 2026-03-05 21:20:04,952 | INFO     | exitmsg: OK
[2026-03-05 16:20:39] 2026-03-05 21:20:04,952 | INFO     | cpuconsumptiontime: 18204 s
[2026-03-05 16:20:39] 2026-03-05 21:20:04,952 | INFO     | nevents: 400
[2026-03-05 16:20:39] 2026-03-05 21:20:04,952 | INFO     | neventsw: 0
[2026-03-05 16:20:39] 2026-03-05 21:20:04,952 | INFO     | pid: 4160506
[2026-03-05 16:20:39] 2026-03-05 21:20:04,952 | INFO     | pgrp: 4160506
[2026-03-05 16:20:39] 2026-03-05 21:20:04,952 | INFO     | corecount: 8
[2026-03-05 16:20:39] 2026-03-05 21:20:04,952 | INFO     | event service: False
[2026-03-05 16:20:39] 2026-03-05 21:20:04,952 | INFO     | sizes: {0: 2294613, 1: 2295298, 2: 2295326, 3: 2295326, 4: 2295787, 15: 2295787, 5973: 2322554, 5975: 2331552, 5976: 2331608, 5977: 2331830}
[2026-03-05 16:20:39] 2026-03-05 21:20:04,952 | INFO     | --------------------------------------------------
[2026-03-05 16:20:39] 2026-03-05 21:20:04,952 | INFO     | 
[2026-03-05 16:20:39] 2026-03-05 21:20:04,952 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-03-05 16:20:39] 2026-03-05 21:20:05,046 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-05 16:20:39] 2026-03-05 21:20:05,048 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-05 16:20:39] 2026-03-05 21:20:05,048 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-05 16:20:39] 2026-03-05 21:20:05,049 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-05 16:20:39] 2026-03-05 21:20:05,049 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-05 16:20:39] 2026-03-05 21:20:05,049 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-05 16:20:39] 2026-03-05 21:20:05,049 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-05 16:20:39] 2026-03-05 21:20:05,049 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-05 16:20:39] 2026-03-05 21:20:05,049 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-05 16:20:39] 2026-03-05 21:20:05,049 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-05 16:20:39] 2026-03-05 21:20:05,049 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-05 16:20:39] 2026-03-05 21:20:05,049 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-05 16:20:39] 2026-03-05 21:20:05,049 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-05 16:20:39] 2026-03-05 21:20:05,049 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-05 16:20:39] 2026-03-05 21:20:05,049 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-05 16:20:39] 2026-03-05 21:20:05,049 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-05 16:20:39] 2026-03-05 21:20:05,049 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-05 16:20:39] 2026-03-05 21:20:05,049 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-05 16:20:39] 2026-03-05 21:20:05,049 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-05 16:20:39] 2026-03-05 21:20:05,049 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-05 16:20:39] 2026-03-05 21:20:05,049 | INFO     | job 7038578322 has completed (purged errors)
[2026-03-05 16:20:39] 2026-03-05 21:20:05,049 | INFO     | overall cleanup function is called
[2026-03-05 16:20:39] 2026-03-05 21:20:05,713 | INFO     | number of running child processes to parent process 4160506: 1
[2026-03-05 16:20:39] 2026-03-05 21:20:05,713 | INFO     | maximum number of monitored processes: 7
[2026-03-05 16:20:39] 2026-03-05 21:20:05,713 | INFO     | aborting job monitoring since job object (job id=7038578322) has expired
[2026-03-05 16:20:39] 2026-03-05 21:20:06,078 | INFO     | --- collectZombieJob: --- 10, [4160506]
[2026-03-05 16:20:39] 2026-03-05 21:20:06,078 | INFO     | zombie collector waiting for pid 4160506
[2026-03-05 16:20:39] 2026-03-05 21:20:06,078 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 16:20:39] 2026-03-05 21:20:06,078 | INFO     | collected zombie processes
[2026-03-05 16:20:39] 2026-03-05 21:20:06,078 | INFO     | will attempt to kill all subprocesses of pid=4160506
[2026-03-05 16:20:39] 2026-03-05 21:20:08,122 | INFO     | process IDs to be killed: [4160506] (in reverse order)
[2026-03-05 16:20:39] 2026-03-05 21:20:08,338 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 16:20:39] 2026-03-05 21:20:08,339 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 16:20:39] 2026-03-05 21:20:08,372 | INFO     | did not find any defunct processes belonging to 4160506
[2026-03-05 16:20:39] 2026-03-05 21:20:08,401 | INFO     | did not find any defunct processes belonging to 4160506
[2026-03-05 16:20:39] 2026-03-05 21:20:08,401 | INFO     | ready for new job
[2026-03-05 16:20:39] 2026-03-05 21:20:08,401 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 16:20:39] 2026-03-05 21:20:08,403 | INFO     | **************************************
[2026-03-05 16:20:39] 2026-03-05 21:20:08,403 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 16:20:39] 2026-03-05 21:20:08,403 | INFO     | **************************************
[2026-03-05 16:20:39] 2026-03-05 21:20:08,403 | INFO     | 
[2026-03-05 16:20:39] 2026-03-05 21:20:08,407 | INFO     | architecture information:
[2026-03-05 16:20:39] 2026-03-05 21:20:08,407 | INFO     | executing command: cat /etc/os-release
[2026-03-05 16:20:39] 2026-03-05 21:20:08,498 | INFO     | cat /etc/os-release:
[2026-03-05 16:20:39] NAME="CentOS Linux"
[2026-03-05 16:20:39] VERSION="7 (Core)"
[2026-03-05 16:20:39] ID="centos"
[2026-03-05 16:20:39] ID_LIKE="rhel fedora"
[2026-03-05 16:20:39] VERSION_ID="7"
[2026-03-05 16:20:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 16:20:39] ANSI_COLOR="0;31"
[2026-03-05 16:20:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 16:20:39] HOME_URL="https://www.centos.org/"
[2026-03-05 16:20:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 16:20:39] 
[2026-03-05 16:20:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 16:20:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 16:20:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 16:20:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 16:20:39] 
[2026-03-05 16:20:39] 2026-03-05 21:20:08,498 | INFO     | **************************************
[2026-03-05 16:20:39] 2026-03-05 21:20:09,002 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-03-05 16:20:39] 2026-03-05 21:20:09,058 | INFO     | sufficient remaining disk space (167300300800 B)
[2026-03-05 16:20:39] 2026-03-05 21:20:09,059 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 16:20:39] 2026-03-05 21:20:09,059 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 16:20:39] 2026-03-05 21:20:09,059 | INFO     | update_server=False
[2026-03-05 16:20:39] 2026-03-05 21:20:09,059 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 16:20:39] 2026-03-05 21:20:09,061 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 16:20:39] 2026-03-05 21:20:09,223 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 16:20:39] 2026-03-05 21:20:09,223 | INFO     | aborting loop
[2026-03-05 16:20:39] 2026-03-05 21:20:09,537 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 16:20:39] 2026-03-05 21:20:09,967 | INFO     | all data control threads have been joined
[2026-03-05 16:20:39] 2026-03-05 21:20:09,968 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 16:20:39] 2026-03-05 21:20:10,016 | INFO     | all payload control threads have been joined
[2026-03-05 16:20:39] 2026-03-05 21:20:10,065 | INFO     | [job] retrieve thread has finished
[2026-03-05 16:20:39] 2026-03-05 21:20:10,211 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 16:20:39] 2026-03-05 21:20:10,214 | INFO     | [job] validate thread has finished
[2026-03-05 16:20:39] 2026-03-05 21:20:10,229 | INFO     | [job] job monitor thread has finished
[2026-03-05 16:20:39] 2026-03-05 21:20:10,436 | INFO     | [payload] validate_post thread has finished
[2026-03-05 16:20:39] 2026-03-05 21:20:10,503 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 16:20:39] 2026-03-05 21:20:10,631 | INFO     | all job control threads have been joined
[2026-03-05 16:20:39] 2026-03-05 21:20:10,974 | INFO     | [data] control thread has finished
[2026-03-05 16:20:39] 2026-03-05 21:20:10,975 | INFO     | [job] queue monitor thread has finished
[2026-03-05 16:20:39] 2026-03-05 21:20:11,022 | INFO     | [payload] control thread has finished
[2026-03-05 16:20:39] 2026-03-05 21:20:11,030 | INFO     | [data] copytool_in thread has finished
[2026-03-05 16:20:39] 2026-03-05 21:20:11,068 | INFO     | [data] copytool_out thread has finished
[2026-03-05 16:20:39] 2026-03-05 21:20:11,084 | INFO     | [payload] failed_post thread has finished
[2026-03-05 16:20:39] 2026-03-05 21:20:11,165 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 16:20:39] 2026-03-05 21:20:11,492 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 16:20:39] 2026-03-05 21:20:11,636 | INFO     | [job] control thread has finished
[2026-03-05 16:20:39] 2026-03-05 21:20:13,550 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 16:20:39] 2026-03-05 21:20:21,788 | INFO     | [monitor] cgroup control has ended
[2026-03-05 16:20:39] 2026-03-05 21:20:23,344 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139943014430528)>', '<ExcThread(monitor, started 139942365746944)>']
[2026-03-05 16:20:39] 2026-03-05 21:20:28,369 | INFO     | all workflow threads have been joined
[2026-03-05 16:20:39] 2026-03-05 21:20:28,369 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 16:20:39] 2026-03-05 21:20:28,369 | INFO     | traces error code: 0
[2026-03-05 16:20:39] 2026-03-05 21:20:28,369 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 16:20:39] 2026-03-05 21:20:37,996 | INFO     | PID=4137670 has CPU usage=8.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-05 16:20:39] 2026-03-05 21:20:37,997 | INFO     | .. there are 64 such processes running
[2026-03-05 16:20:39] 2026-03-05 21:20:37,997 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 16:20:39] 2026-03-05 21:20:37,997 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 16:20:39] 2026-03-05 21:20:37,997 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 16:20:39] 2026-03-05 21:20:37,997 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 16:20:39] 2026-03-05 21:20:37,997 | INFO     | [monitor] control thread has ended
[2026-03-05 16:20:39] 2026-03-05 21:20:38,382 [wrapper] ==== pilot stdout END ====
[2026-03-05 16:20:39] 2026-03-05 21:20:38,409 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 16:20:39] 2026-03-05 21:20:38,439 [wrapper] pilotpid: 4137670
[2026-03-05 16:20:39] 2026-03-05 21:20:38,476 [wrapper] Pilot exit status: 0
[2026-03-05 16:20:39] 2026-03-05 21:20:38,550 [wrapper] pandaids: 7038578322
[2026-03-05 16:20:39] 2026-03-05 21:20:38,945 [wrapper] cleanup supervisor_pilot  717250 4137671
[2026-03-05 16:20:39] 2026-03-05 21:20:38,977 [wrapper] Test setup, not cleaning
[2026-03-05 16:20:39] 2026-03-05 21:20:39,007 [wrapper] apfmon messages muted
[2026-03-05 16:20:39] 2026-03-05 21:20:39,019 [wrapper] ==== wrapper stdout END ====
[2026-03-05 16:20:39] 2026-03-05 21:20:39,034 [wrapper] ==== wrapper stderr END ====
[2026-03-05 16:20:39]  *** Error codes and diagnostics ***
[2026-03-05 16:20:39]     "exeErrorCode": 0,
[2026-03-05 16:20:39]     "exeErrorDiag": "",
[2026-03-05 16:20:39]     "pilotErrorCode": 0,
[2026-03-05 16:20:39]     "pilotErrorDiag": "",
[2026-03-05 16:20:39]  *** Listing of results directory ***
[2026-03-05 16:20:39] total 335008
[2026-03-05 16:20:39] -rw-r--r--. 1 boincer umatlas    584627 Mar  4 04:32 pilot3.tar.gz
[2026-03-05 16:20:39] -rwx------. 1 boincer umatlas     36322 Mar  4 04:33 runpilot2-wrapper.sh
[2026-03-05 16:20:39] -rw-r--r--. 1 boincer umatlas      5111 Mar  4 04:34 queuedata.json
[2026-03-05 16:20:39] -rw-r--r--. 1 boincer umatlas       100 Mar  5 14:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 16:20:39] -rwxr-xr-x. 1 boincer umatlas      7986 Mar  5 14:38 run_atlas
[2026-03-05 16:20:39] -rw-r--r--. 1 boincer umatlas       105 Mar  5 14:38 job.xml
[2026-03-05 16:20:39] -rw-r--r--. 2 boincer umatlas 186867498 Mar  5 14:38 EVNT.48700856._000122.pool.root.1
[2026-03-05 16:20:39] -rw-r--r--. 2 boincer umatlas     15845 Mar  5 14:38 start_atlas.sh
[2026-03-05 16:20:39] drwxrwx--x. 2 boincer umatlas      4096 Mar  5 14:38 shared
[2026-03-05 16:20:39] -rw-r--r--. 2 boincer umatlas    597940 Mar  5 14:38 input.tar.gz
[2026-03-05 16:20:39] -rw-r--r--. 1 boincer umatlas         0 Mar  5 14:38 boinc_lockfile
[2026-03-05 16:20:39] -rw-r--r--. 1 boincer umatlas      2521 Mar  5 14:38 pandaJob.out
[2026-03-05 16:20:39] -rw-------. 1 boincer umatlas        57 Mar  5 14:38 setup.sh.local
[2026-03-05 16:20:39] -rw-------. 1 boincer umatlas    998528 Mar  5 14:39 agis_schedconf.cvmfs.json
[2026-03-05 16:20:39] -rw-------. 1 boincer umatlas   1521291 Mar  5 14:39 agis_ddmendpoints.agis.ALL.json
[2026-03-05 16:20:39] -rw-------. 1 boincer umatlas       431 Mar  5 14:40 workernode_map.json
[2026-03-05 16:20:39] drwx------. 5 boincer umatlas      4096 Mar  5 14:40 pilot3
[2026-03-05 16:20:39] -rw-------. 1 boincer umatlas 150029635 Mar  5 16:19 HITS.48700858._003131.pool.root.1
[2026-03-05 16:20:39] -rw-r--r--. 1 boincer umatlas       529 Mar  5 16:19 boinc_task_state.xml
[2026-03-05 16:20:39] -rw-------. 1 boincer umatlas        95 Mar  5 16:19 pilot_heartbeat.json
[2026-03-05 16:20:39] -rw-------. 1 boincer umatlas      1034 Mar  5 16:19 memory_monitor_summary.json
[2026-03-05 16:20:39] -rw-------. 1 boincer umatlas    336481 Mar  5 16:20 log.48700858._003131.job.log.tgz.1
[2026-03-05 16:20:39] -rw-------. 1 boincer umatlas      6331 Mar  5 16:20 heartbeat.json
[2026-03-05 16:20:39] -rw-r--r--. 1 boincer umatlas      7173 Mar  5 16:20 init_data.xml
[2026-03-05 16:20:39] -rw-r--r--. 1 boincer umatlas      8192 Mar  5 16:20 boinc_mmap_file
[2026-03-05 16:20:39] -rw-r--r--. 1 boincer umatlas        27 Mar  5 16:20 wrapper_checkpoint.txt
[2026-03-05 16:20:39] -rw-------. 1 boincer umatlas       823 Mar  5 16:20 pilotlog.txt
[2026-03-05 16:20:39] -rw-------. 1 boincer umatlas    769184 Mar  5 16:20 log.48700858._003131.job.log.1
[2026-03-05 16:20:39] -rw-------. 1 boincer umatlas       357 Mar  5 16:20 output.list
[2026-03-05 16:20:39] -rw-r--r--. 1 boincer umatlas       620 Mar  5 16:20 runtime_log
[2026-03-05 16:20:39] -rw-------. 1 boincer umatlas   1126400 Mar  5 16:20 result.tar.gz
[2026-03-05 16:20:39] -rw-r--r--. 1 boincer umatlas      9336 Mar  5 16:20 runtime_log.err
[2026-03-05 16:20:39] -rw-------. 1 boincer umatlas       651 Mar  5 16:20 4MMLDmZmxH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmv2JLDmgAHn4n.diag
[2026-03-05 16:20:39] -rw-r--r--. 1 boincer umatlas     22291 Mar  5 16:20 stderr.txt
[2026-03-05 16:20:39] HITS file was successfully produced:
[2026-03-05 16:20:39] -rw-------. 1 boincer umatlas 150029635 Mar  5 16:19 shared/HITS.pool.root.1
[2026-03-05 16:20:39]  *** Contents of shared directory: ***
[2026-03-05 16:20:39] total 330712
[2026-03-05 16:20:39] -rw-r--r--. 2 boincer umatlas 186867498 Mar  5 14:38 ATLAS.root_0
[2026-03-05 16:20:39] -rw-r--r--. 2 boincer umatlas     15845 Mar  5 14:38 start_atlas.sh
[2026-03-05 16:20:39] -rw-r--r--. 2 boincer umatlas    597940 Mar  5 14:38 input.tar.gz
[2026-03-05 16:20:39] -rw-------. 1 boincer umatlas 150029635 Mar  5 16:19 HITS.pool.root.1
[2026-03-05 16:20:39] -rw-------. 1 boincer umatlas   1126400 Mar  5 16:20 result.tar.gz
16:20:40 (4126042): run_atlas exited; CPU time 18438.282356
16:20:40 (4126042): called boinc_finish(0)

</stderr_txt>
]]>

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