Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:07:24 (13211): wrapper (7.7.26015): starting
08:07:24 (13211): wrapper: running run_atlas (--nthreads 3)
[2026-03-06 08:07:24] Arguments: --nthreads 3
[2026-03-06 08:07:24] Threads: 3
[2026-03-06 08:07:24] Checking for CVMFS
[2026-03-06 08:07:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-06 08:07:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-06 08:07:26] Running cvmfs_config stat atlas.cern.ch
[2026-03-06 08:07:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-06 08:07:26] 2.9.2.0 2547764 12329 85740 156947 1 50 29702269 36864000 0 130560 0 4636804 99.981 456101 10039 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-06 08:07:26] CVMFS is ok
[2026-03-06 08:07:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-06 08:07:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-06 08:07:26] Further information can be found at the LHC@home message board.
[2026-03-06 08:07:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-06 08:07:26] Checking for apptainer binary...
[2026-03-06 08:07:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-06 08:07:26] Running /usr/bin/apptainer --version
[2026-03-06 08:07:26] apptainer version 1.4.1-1.1
[2026-03-06 08:07:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-06 08:07:26] atlasA228b
[2026-03-06 08:07:26] apptainer works
[2026-03-06 08:07:26] Set ATHENA_PROC_NUMBER=3
[2026-03-06 08:07:26] Set ATHENA_CORE_NUMBER=3
[2026-03-06 08:07:26] Starting ATLAS job with PandaID=7038649499
[2026-03-06 08:07:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-06 09:22:50]  *** The last 200 lines of the pilot log: ***
[2026-03-06 09:22:50] 2026-03-06 08:21:43,385 | INFO     | will attempt to kill all subprocesses of pid=21691
[2026-03-06 09:22:50] 2026-03-06 08:21:43,430 | INFO     | process IDs to be killed: [21691] (in reverse order)
[2026-03-06 09:22:50] 2026-03-06 08:21:43,457 | WARNING  | found no corresponding commands to process id(s)
[2026-03-06 09:22:50] 2026-03-06 08:21:43,457 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-06 09:22:50] 2026-03-06 08:21:43,458 | INFO     | did not find any defunct processes belonging to 21691
[2026-03-06 09:22:50] 2026-03-06 08:21:43,459 | INFO     | did not find any defunct processes belonging to 21691
[2026-03-06 09:22:50] 2026-03-06 08:21:43,459 | INFO     | ready for new job
[2026-03-06 09:22:50] 2026-03-06 08:21:43,460 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-06 09:22:50] 2026-03-06 08:21:43,460 | INFO     | **************************************
[2026-03-06 09:22:50] 2026-03-06 08:21:43,460 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-06 09:22:50] 2026-03-06 08:21:43,460 | INFO     | **************************************
[2026-03-06 09:22:50] 2026-03-06 08:21:43,460 | INFO     | 
[2026-03-06 09:22:50] 2026-03-06 08:21:43,461 | INFO     | architecture information:
[2026-03-06 09:22:50] 2026-03-06 08:21:43,461 | INFO     | executing command: cat /etc/os-release
[2026-03-06 09:22:50] 2026-03-06 08:21:43,470 | INFO     | cat /etc/os-release:
[2026-03-06 09:22:50] NAME="CentOS Linux"
[2026-03-06 09:22:50] VERSION="7 (Core)"
[2026-03-06 09:22:50] ID="centos"
[2026-03-06 09:22:50] ID_LIKE="rhel fedora"
[2026-03-06 09:22:50] VERSION_ID="7"
[2026-03-06 09:22:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-06 09:22:50] ANSI_COLOR="0;31"
[2026-03-06 09:22:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-06 09:22:50] HOME_URL="https://www.centos.org/"
[2026-03-06 09:22:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-06 09:22:50] 
[2026-03-06 09:22:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-06 09:22:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-06 09:22:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-06 09:22:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-06 09:22:50] 
[2026-03-06 09:22:50] 2026-03-06 08:21:43,470 | INFO     | **************************************
[2026-03-06 09:22:50] 2026-03-06 08:21:43,974 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-06 09:22:50] 2026-03-06 08:21:43,987 | INFO     | sufficient remaining disk space (273760124928 B)
[2026-03-06 09:22:50] 2026-03-06 08:21:43,987 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-06 09:22:50] 2026-03-06 08:21:43,988 | INFO     | current server update state: UPDATING_FINAL
[2026-03-06 09:22:50] 2026-03-06 08:21:43,988 | INFO     | update_server=False
[2026-03-06 09:22:50] 2026-03-06 08:21:43,988 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-06 09:22:50] 2026-03-06 08:21:43,988 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-06 09:22:50] 2026-03-06 08:21:43,988 | INFO     | aborting loop
[2026-03-06 09:22:50] 2026-03-06 08:21:43,988 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-06 09:22:50] 2026-03-06 08:21:44,539 | INFO     | all data control threads have been joined
[2026-03-06 09:22:50] 2026-03-06 08:21:44,541 | INFO     | all job control threads have been joined
[2026-03-06 09:22:50] 2026-03-06 08:21:44,636 | INFO     | all payload control threads have been joined
[2026-03-06 09:22:50] 2026-03-06 08:21:44,993 | INFO     | [job] job monitor thread has finished
[2026-03-06 09:22:50] 2026-03-06 08:21:44,994 | INFO     | [job] retrieve thread has finished
[2026-03-06 09:22:50] 2026-03-06 08:21:44,994 | INFO     | [job] queue monitor thread has finished
[2026-03-06 09:22:50] 2026-03-06 08:21:44,994 | INFO     | [payload] execute_payloads thread has finished
[2026-03-06 09:22:50] 2026-03-06 08:21:45,324 | INFO     | [payload] validate_post thread has finished
[2026-03-06 09:22:50] 2026-03-06 08:21:45,334 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-06 09:22:50] 2026-03-06 08:21:45,545 | INFO     | [data] control thread has finished
[2026-03-06 09:22:50] 2026-03-06 08:21:45,547 | INFO     | [job] control thread has finished
[2026-03-06 09:22:50] 2026-03-06 08:21:45,642 | INFO     | [payload] control thread has finished
[2026-03-06 09:22:50] 2026-03-06 08:21:45,695 | INFO     | [job] validate thread has finished
[2026-03-06 09:22:50] 2026-03-06 08:21:45,757 | INFO     | [job] create_data_payload thread has finished
[2026-03-06 09:22:50] 2026-03-06 08:21:45,789 | INFO     | [payload] validate_pre thread has finished
[2026-03-06 09:22:50] 2026-03-06 08:21:45,909 | INFO     | [data] copytool_in thread has finished
[2026-03-06 09:22:50] 2026-03-06 08:21:45,962 | INFO     | [payload] failed_post thread has finished
[2026-03-06 09:22:50] 2026-03-06 08:21:46,312 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-06 09:22:50] 2026-03-06 08:21:47,340 | INFO     | [data] copytool_out thread has finished
[2026-03-06 09:22:50] 2026-03-06 08:21:50,319 | INFO     | [data] queue_monitor thread has finished
[2026-03-06 09:22:50] 2026-03-06 08:21:54,174 | INFO     | job.realtimelogging is not enabled
[2026-03-06 09:22:50] 2026-03-06 08:21:55,179 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-06 09:22:50] 2026-03-06 08:22:15,054 | INFO     | PID=17260 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-06 09:22:50] 2026-03-06 08:22:15,054 | INFO     | found 0 job(s) in 20 queues
[2026-03-06 09:22:50] 2026-03-06 08:22:15,054 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-06 09:22:50] 2026-03-06 08:22:15,054 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-06 09:22:50] 2026-03-06 08:22:34,190 [wrapper] supervise_pilot (15 min periods counter: 6)
[2026-03-06 09:22:50] 2026-03-06 08:22:43,689 | INFO     | [monitor] cgroup control has ended
[2026-03-06 09:22:50] 2026-03-06 08:22:44,979 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140549063706432)>', '<ExcThread(monitor, started 140548409112320)>']
[2026-03-06 09:22:50] 2026-03-06 08:22:45,207 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-06 09:22:50] 2026-03-06 08:22:45,208 | INFO     | [monitor] control thread has ended
[2026-03-06 09:22:50] 2026-03-06 08:22:49,993 | INFO     | all workflow threads have been joined
[2026-03-06 09:22:50] 2026-03-06 08:22:49,993 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-06 09:22:50] 2026-03-06 08:22:49,994 | INFO     | traces error code: 0
[2026-03-06 09:22:50] 2026-03-06 08:22:49,994 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-06 09:22:50] 2026-03-06 08:22:50,045 [wrapper] ==== pilot stdout END ====
[2026-03-06 09:22:50] 2026-03-06 08:22:50,048 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-06 09:22:50] 2026-03-06 08:22:50,051 [wrapper] pilotpid: 17260
[2026-03-06 09:22:50] 2026-03-06 08:22:50,053 [wrapper] Pilot exit status: 0
[2026-03-06 09:22:50] 2026-03-06 08:22:50,061 [wrapper] pandaids: 7038649499
[2026-03-06 09:22:50] 2026-03-06 08:22:50,080 [wrapper] cleanup supervisor_pilot   27352 17261
[2026-03-06 09:22:50] 2026-03-06 08:22:50,082 [wrapper] Test setup, not cleaning
[2026-03-06 09:22:50] 2026-03-06 08:22:50,085 [wrapper] apfmon messages muted
[2026-03-06 09:22:50] 2026-03-06 08:22:50,088 [wrapper] ==== wrapper stdout END ====
[2026-03-06 09:22:50] 2026-03-06 08:22:50,090 [wrapper] ==== wrapper stderr END ====
[2026-03-06 09:22:50]  *** Error codes and diagnostics ***
[2026-03-06 09:22:50]     "exeErrorCode": 0,
[2026-03-06 09:22:50]     "exeErrorDiag": "",
[2026-03-06 09:22:50]     "pilotErrorCode": 0,
[2026-03-06 09:22:50]     "pilotErrorDiag": "",
[2026-03-06 09:22:50]  *** Listing of results directory ***
[2026-03-06 09:22:50] total 614740
[2026-03-06 09:22:50] -rw-r--r-- 1 boinc boinc      5111 Mar  5 18:40 queuedata.json
[2026-03-06 09:22:50] -rw-r--r-- 1 boinc boinc    584627 Mar  5 18:40 pilot3.tar.gz
[2026-03-06 09:22:50] -rwx------ 1 boinc boinc     36322 Mar  5 18:40 runpilot2-wrapper.sh
[2026-03-06 09:22:50] -rw-r--r-- 1 boinc boinc       100 Mar  6 08:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-06 09:22:50] -rwxr-xr-x 1 boinc boinc      7986 Mar  6 08:07 run_atlas
[2026-03-06 09:22:50] -rw-r--r-- 1 boinc boinc       105 Mar  6 08:07 job.xml
[2026-03-06 09:22:50] -rw-r--r-- 2 boinc boinc 442702883 Mar  6 08:07 EVNT.46701403._001144.pool.root.1
[2026-03-06 09:22:50] -rw-r--r-- 2 boinc boinc    597948 Mar  6 08:07 input.tar.gz
[2026-03-06 09:22:50] -rw-r--r-- 2 boinc boinc     15845 Mar  6 08:07 start_atlas.sh
[2026-03-06 09:22:50] drwxrwx--x 2 boinc boinc      4096 Mar  6 08:07 shared
[2026-03-06 09:22:50] -rw-r--r-- 1 boinc boinc         0 Mar  6 08:07 boinc_setup_complete
[2026-03-06 09:22:50] -rw-r--r-- 1 boinc boinc      6449 Mar  6 08:07 init_data.xml
[2026-03-06 09:22:50] -rw-r--r-- 1 boinc boinc         0 Mar  6 08:07 boinc_lockfile
[2026-03-06 09:22:50] -rw-r--r-- 1 boinc boinc      2560 Mar  6 08:07 pandaJob.out
[2026-03-06 09:22:50] -rw------- 1 boinc boinc    998544 Mar  6 08:07 agis_schedconf.cvmfs.json
[2026-03-06 09:22:50] -rw------- 1 boinc boinc   1521291 Mar  6 08:07 agis_ddmendpoints.agis.ALL.json
[2026-03-06 09:22:50] -rw------- 1 boinc boinc       426 Mar  6 08:07 workernode_map.json
[2026-03-06 09:22:50] drwx------ 5 boinc boinc      4096 Mar  6 08:07 pilot3
[2026-03-06 09:22:50] -rw------- 1 boinc boinc 181058670 Mar  6 09:21 HITS.48955010._007166.pool.root.1
[2026-03-06 09:22:50] -rw-r--r-- 1 boinc boinc       530 Mar  6 09:21 boinc_task_state.xml
[2026-03-06 09:22:50] -rw------- 1 boinc boinc      1013 Mar  6 09:21 memory_monitor_summary.json
[2026-03-06 09:22:50] -rw------- 1 boinc boinc    247973 Mar  6 09:21 log.48955010._007166.job.log.tgz.1
[2026-03-06 09:22:50] -rw------- 1 boinc boinc      6304 Mar  6 09:21 heartbeat.json
[2026-03-06 09:22:50] -rw------- 1 boinc boinc        95 Mar  6 09:22 pilot_heartbeat.json
[2026-03-06 09:22:50] -rw-r--r-- 1 boinc boinc        27 Mar  6 09:22 wrapper_checkpoint.txt
[2026-03-06 09:22:50] -rw-r--r-- 1 boinc boinc      8192 Mar  6 09:22 boinc_mmap_file
[2026-03-06 09:22:50] -rw------- 1 boinc boinc      4818 Mar  6 09:22 pilotlog.txt
[2026-03-06 09:22:50] -rw------- 1 boinc boinc    655648 Mar  6 09:22 log.48955010._007166.job.log.1
[2026-03-06 09:22:50] -rw------- 1 boinc boinc       357 Mar  6 09:22 output.list
[2026-03-06 09:22:50] -rw-r--r-- 1 boinc boinc       620 Mar  6 09:22 runtime_log
[2026-03-06 09:22:50] -rw------- 1 boinc boinc    921600 Mar  6 09:22 result.tar.gz
[2026-03-06 09:22:50] -rw------- 1 boinc boinc       661 Mar  6 09:22 upJODmsrRI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmiXOLDmot1wHn.diag
[2026-03-06 09:22:50] -rw-r--r-- 1 boinc boinc      8916 Mar  6 09:22 runtime_log.err
[2026-03-06 09:22:50] -rw-r--r-- 1 boinc boinc     10376 Mar  6 09:22 stderr.txt
[2026-03-06 09:22:50] HITS file was successfully produced:
[2026-03-06 09:22:50] -rw------- 1 boinc boinc 181058670 Mar  6 09:21 shared/HITS.pool.root.1
[2026-03-06 09:22:50]  *** Contents of shared directory: ***
[2026-03-06 09:22:50] total 610652
[2026-03-06 09:22:50] -rw-r--r-- 2 boinc boinc 442702883 Mar  6 08:07 ATLAS.root_0
[2026-03-06 09:22:50] -rw-r--r-- 2 boinc boinc    597948 Mar  6 08:07 input.tar.gz
[2026-03-06 09:22:50] -rw-r--r-- 2 boinc boinc     15845 Mar  6 08:07 start_atlas.sh
[2026-03-06 09:22:50] -rw------- 1 boinc boinc 181058670 Mar  6 09:21 HITS.pool.root.1
[2026-03-06 09:22:50] -rw------- 1 boinc boinc    921600 Mar  6 09:22 result.tar.gz
09:22:51 (13211): run_atlas exited; CPU time 12560.138782
09:22:51 (13211): called boinc_finish(0)

</stderr_txt>
]]>

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