Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
07:48:03 (91997): wrapper (7.7.26015): starting
07:48:03 (91997): wrapper: running run_atlas (--nthreads 12)
[2026-03-07 07:48:03] Arguments: --nthreads 12
[2026-03-07 07:48:03] Threads: 12
[2026-03-07 07:48:03] Checking for CVMFS
[2026-03-07 07:48:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-07 07:48:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-07 07:48:04] Running cvmfs_config stat atlas.cern.ch
[2026-03-07 07:48:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-07 07:48:04] 2.13.3.0 63747 13 44672 157001 2 186 5142657 10240001 876 130560 0 43371 99.998 1338 742 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2026-03-07 07:48:04] CVMFS is ok
[2026-03-07 07:48:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 07:48:04] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-07 07:48:04] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-07 07:48:04] Further information can be found at the LHC@home message board.
[2026-03-07 07:48:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 07:48:04] Checking for apptainer binary...
[2026-03-07 07:48:04] apptainer is not installed, using version from CVMFS
[2026-03-07 07:48:04] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 07:48:04] pots
[2026-03-07 07:48:04] apptainer works
[2026-03-07 07:48:04] Set ATHENA_PROC_NUMBER=12
[2026-03-07 07:48:04] Set ATHENA_CORE_NUMBER=12
[2026-03-07 07:48:04] Starting ATLAS job with PandaID=7038619053
[2026-03-07 07:48:04] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/home/pepper/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 08:20:10]  *** The last 200 lines of the pilot log: ***
[2026-03-07 08:20:10]  ddmendpoint_alt=None
[2026-03-07 08:20:10]  direct_access_lan=False
[2026-03-07 08:20:10]  direct_access_wan=False
[2026-03-07 08:20:10]  domain=
[2026-03-07 08:20:10]  filesize=362184
[2026-03-07 08:20:10]  filetype=log
[2026-03-07 08:20:10]  guid=b20fac11-8d39-4f6e-9e5a-e90c0b8b761a
[2026-03-07 08:20:10]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-07 08:20:10]  is_altstaged=None
[2026-03-07 08:20:10]  is_tar=False
[2026-03-07 08:20:10]  lfn=log.48955006._005628.job.log.tgz.1
[2026-03-07 08:20:10]  mtime=0
[2026-03-07 08:20:10]  protocol_id=None
[2026-03-07 08:20:10]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-07 08:20:10]  replicas=None
[2026-03-07 08:20:10]  scope=mc23_13p6TeV
[2026-03-07 08:20:10]  status=None
[2026-03-07 08:20:10]  status_code=0
[2026-03-07 08:20:10]  storage_token=
[2026-03-07 08:20:10]  surl=/home/pepper/slots/0/PanDA_Pilot-7038619053/log.48955006._005628.job.log.tgz.1
[2026-03-07 08:20:10]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/50/log.48955006._005628.job.log.tgz.1
[2026-03-07 08:20:10]  workdir=None
[2026-03-07 08:20:10] ]
[2026-03-07 08:20:10] 2026-03-07 13:19:15,895 | INFO     | transferring file log.48955006._005628.job.log.tgz.1 from /home/pepper/slots/0/PanDA_Pilot-7038619053/log.48955006._005628.job.log.tgz.1 to /home/pepper/slots/0/lo
[2026-03-07 08:20:10] 2026-03-07 13:19:15,895 | INFO     | executing command: /usr/bin/env mv /home/pepper/slots/0/PanDA_Pilot-7038619053/log.48955006._005628.job.log.tgz.1 /home/pepper/slots/0/log.48955006._005628.job.log
[2026-03-07 08:20:10] 2026-03-07 13:19:15,902 | INFO     | adding to output.list: log.48955006._005628.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/50/log.48955006._005628.job.log.tg
[2026-03-07 08:20:10] 2026-03-07 13:19:15,903 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-07 08:20:10] 2026-03-07 13:19:15,903 | INFO     | summary of transferred files:
[2026-03-07 08:20:10] 2026-03-07 13:19:15,903 | INFO     |  -- lfn=log.48955006._005628.job.log.tgz.1, status_code=0, status=transferred
[2026-03-07 08:20:10] 2026-03-07 13:19:15,903 | INFO     | stage-out finished correctly
[2026-03-07 08:20:10] 2026-03-07 13:19:15,918 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-07 08:20:10] 2026-03-07 13:19:15,937 | INFO     | job 7038619053 has state=finished
[2026-03-07 08:20:10] 2026-03-07 13:19:15,937 | INFO     | preparing for final server update for job 7038619053 in state='finished'
[2026-03-07 08:20:10] 2026-03-07 13:19:15,937 | INFO     | reading metadata from: /home/pepper/slots/0/PanDA_Pilot-7038619053/jobReport.json
[2026-03-07 08:20:10] 2026-03-07 13:19:15,938 | INFO     | added worker_node to metadata from /home/pepper/slots/0/workernode_map.json
[2026-03-07 08:20:10] 2026-03-07 13:19:15,938 | INFO     | this job has now completed (state=finished)
[2026-03-07 08:20:10] 2026-03-07 13:19:15,938 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-07 08:20:10] 2026-03-07 13:19:15,938 | INFO     | log transfer has been attempted: DONE
[2026-03-07 08:20:10] 2026-03-07 13:19:15,938 | INFO     | job 7038619053 has finished - writing final server update
[2026-03-07 08:20:10] 2026-03-07 13:19:15,938 | INFO     | total number of processed events: 400 (read)
[2026-03-07 08:20:10] 2026-03-07 13:19:15,939 | INFO     | using path: /home/pepper/slots/0/PanDA_Pilot-7038619053/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 08:20:10] 2026-03-07 13:19:15,939 | INFO     | extracted standard info from prmon json
[2026-03-07 08:20:10] 2026-03-07 13:19:15,939 | INFO     | extracted standard memory fields from prmon json
[2026-03-07 08:20:10] 2026-03-07 13:19:15,939 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-07 08:20:10] 2026-03-07 13:19:15,939 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-07 08:20:10] 2026-03-07 13:19:15,939 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-07 08:20:10] 2026-03-07 13:19:15,939 | INFO     | fitting pss+swap vs Time
[2026-03-07 08:20:10] 2026-03-07 13:19:15,939 | INFO     | sum of square deviations: 3765652.0
[2026-03-07 08:20:10] 2026-03-07 13:19:15,939 | INFO     | sum of deviations: -470023483.0
[2026-03-07 08:20:10] 2026-03-07 13:19:15,939 | INFO     | mean x: 1772888733.0
[2026-03-07 08:20:10] 2026-03-07 13:19:15,939 | INFO     | mean y: 3086899.086956522
[2026-03-07 08:20:10] 2026-03-07 13:19:15,939 | INFO     | intersect: 221292610534.33444
[2026-03-07 08:20:10] 2026-03-07 13:19:15,939 | INFO     | chi2: 0.02975663943949959
[2026-03-07 08:20:10] 2026-03-07 13:19:15,939 | INFO     | current memory leak: -124.82 B/s (using 23 data points, chi2=0.03)
[2026-03-07 08:20:10] 2026-03-07 13:19:15,939 | INFO     | could have reported an average CPU frequency of 4251 MHz (5 samples)
[2026-03-07 08:20:10] 2026-03-07 13:19:15,939 | INFO     | ..............................
[2026-03-07 08:20:10] 2026-03-07 13:19:15,939 | INFO     | . Timing measurements:
[2026-03-07 08:20:10] 2026-03-07 13:19:15,939 | INFO     | . get job = 0 s
[2026-03-07 08:20:10] 2026-03-07 13:19:15,939 | INFO     | . initial setup = 53 s
[2026-03-07 08:20:10] 2026-03-07 13:19:15,939 | INFO     | . payload setup = 1 s
[2026-03-07 08:20:10] 2026-03-07 13:19:15,939 | INFO     | . stage-in = 0 s
[2026-03-07 08:20:10] 2026-03-07 13:19:15,940 | INFO     | . payload execution = 1796 s
[2026-03-07 08:20:10] 2026-03-07 13:19:15,940 | INFO     | . stage-out = 0 s
[2026-03-07 08:20:10] 2026-03-07 13:19:15,940 | INFO     | . log creation = 0 s
[2026-03-07 08:20:10] 2026-03-07 13:19:15,940 | INFO     | ..............................
[2026-03-07 08:20:10] 2026-03-07 13:19:16,294 | INFO     | 
[2026-03-07 08:20:10] 2026-03-07 13:19:16,294 | INFO     | job summary report
[2026-03-07 08:20:10] 2026-03-07 13:19:16,294 | INFO     | --------------------------------------------------
[2026-03-07 08:20:10] 2026-03-07 13:19:16,294 | INFO     | PanDA job id: 7038619053
[2026-03-07 08:20:10] 2026-03-07 13:19:16,294 | INFO     | task id: 48955006
[2026-03-07 08:20:10] 2026-03-07 13:19:16,294 | INFO     | errors: (none)
[2026-03-07 08:20:10] 2026-03-07 13:19:16,294 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 08:20:10] 2026-03-07 13:19:16,294 | INFO     | pilot state: finished 
[2026-03-07 08:20:10] 2026-03-07 13:19:16,294 | INFO     | transexitcode: 0
[2026-03-07 08:20:10] 2026-03-07 13:19:16,294 | INFO     | exeerrorcode: 0
[2026-03-07 08:20:10] 2026-03-07 13:19:16,294 | INFO     | exeerrordiag: 
[2026-03-07 08:20:10] 2026-03-07 13:19:16,294 | INFO     | exitcode: 0
[2026-03-07 08:20:10] 2026-03-07 13:19:16,294 | INFO     | exitmsg: OK
[2026-03-07 08:20:10] 2026-03-07 13:19:16,294 | INFO     | cpuconsumptiontime: 8431 s
[2026-03-07 08:20:10] 2026-03-07 13:19:16,294 | INFO     | nevents: 400
[2026-03-07 08:20:10] 2026-03-07 13:19:16,294 | INFO     | neventsw: 0
[2026-03-07 08:20:10] 2026-03-07 13:19:16,294 | INFO     | pid: 102860
[2026-03-07 08:20:10] 2026-03-07 13:19:16,294 | INFO     | pgrp: 102860
[2026-03-07 08:20:10] 2026-03-07 13:19:16,294 | INFO     | corecount: 12
[2026-03-07 08:20:10] 2026-03-07 13:19:16,294 | INFO     | event service: False
[2026-03-07 08:20:10] 2026-03-07 13:19:16,294 | INFO     | sizes: {0: 2295799, 11: 2295799, 1801: 2320675, 1802: 2329895}
[2026-03-07 08:20:10] 2026-03-07 13:19:16,294 | INFO     | --------------------------------------------------
[2026-03-07 08:20:10] 2026-03-07 13:19:16,294 | INFO     | 
[2026-03-07 08:20:10] 2026-03-07 13:19:16,294 | INFO     | executing command: ls -lF /home/pepper/slots/0
[2026-03-07 08:20:10] 2026-03-07 13:19:16,312 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 08:20:10] 2026-03-07 13:19:16,312 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 08:20:10] 2026-03-07 13:19:16,312 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 08:20:10] 2026-03-07 13:19:16,312 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 08:20:10] 2026-03-07 13:19:16,312 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 08:20:10] 2026-03-07 13:19:16,312 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 08:20:10] 2026-03-07 13:19:16,312 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 08:20:10] 2026-03-07 13:19:16,312 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 08:20:10] 2026-03-07 13:19:16,312 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 08:20:10] 2026-03-07 13:19:16,312 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 08:20:10] 2026-03-07 13:19:16,312 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 08:20:10] 2026-03-07 13:19:16,312 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 08:20:10] 2026-03-07 13:19:16,312 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 08:20:10] 2026-03-07 13:19:16,312 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 08:20:10] 2026-03-07 13:19:16,312 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 08:20:10] 2026-03-07 13:19:16,312 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 08:20:10] 2026-03-07 13:19:16,312 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 08:20:10] 2026-03-07 13:19:16,312 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 08:20:10] 2026-03-07 13:19:16,312 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 08:20:10] 2026-03-07 13:19:16,312 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 08:20:10] 2026-03-07 13:19:16,312 | INFO     | job 7038619053 has completed (purged errors)
[2026-03-07 08:20:10] 2026-03-07 13:19:16,312 | INFO     | overall cleanup function is called
[2026-03-07 08:20:10] 2026-03-07 13:19:17,319 | INFO     | --- collectZombieJob: --- 10, [102860]
[2026-03-07 08:20:10] 2026-03-07 13:19:17,319 | INFO     | zombie collector waiting for pid 102860
[2026-03-07 08:20:10] 2026-03-07 13:19:17,319 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 08:20:10] 2026-03-07 13:19:17,319 | INFO     | collected zombie processes
[2026-03-07 08:20:10] 2026-03-07 13:19:17,319 | INFO     | will attempt to kill all subprocesses of pid=102860
[2026-03-07 08:20:10] 2026-03-07 13:19:17,365 | INFO     | process IDs to be killed: [102860] (in reverse order)
[2026-03-07 08:20:10] 2026-03-07 13:19:17,434 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 08:20:10] 2026-03-07 13:19:17,434 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 08:20:10] 2026-03-07 13:19:17,435 | INFO     | did not find any defunct processes belonging to 102860
[2026-03-07 08:20:10] 2026-03-07 13:19:17,435 | INFO     | did not find any defunct processes belonging to 102860
[2026-03-07 08:20:10] 2026-03-07 13:19:17,435 | INFO     | ready for new job
[2026-03-07 08:20:10] 2026-03-07 13:19:17,435 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 08:20:10] 2026-03-07 13:19:17,436 | INFO     | **************************************
[2026-03-07 08:20:10] 2026-03-07 13:19:17,436 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 08:20:10] 2026-03-07 13:19:17,436 | INFO     | **************************************
[2026-03-07 08:20:10] 2026-03-07 13:19:17,436 | INFO     | 
[2026-03-07 08:20:10] 2026-03-07 13:19:17,436 | INFO     | architecture information:
[2026-03-07 08:20:10] 2026-03-07 13:19:17,436 | INFO     | executing command: cat /etc/os-release
[2026-03-07 08:20:10] 2026-03-07 13:19:17,442 | INFO     | cat /etc/os-release:
[2026-03-07 08:20:10] NAME="CentOS Linux"
[2026-03-07 08:20:10] VERSION="7 (Core)"
[2026-03-07 08:20:10] ID="centos"
[2026-03-07 08:20:10] ID_LIKE="rhel fedora"
[2026-03-07 08:20:10] VERSION_ID="7"
[2026-03-07 08:20:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 08:20:10] ANSI_COLOR="0;31"
[2026-03-07 08:20:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 08:20:10] HOME_URL="https://www.centos.org/"
[2026-03-07 08:20:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 08:20:10] 
[2026-03-07 08:20:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 08:20:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 08:20:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 08:20:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 08:20:10] 
[2026-03-07 08:20:10] 2026-03-07 13:19:17,442 | INFO     | **************************************
[2026-03-07 08:20:10] 2026-03-07 13:19:17,944 | INFO     | executing command: df -mP /home/pepper/slots/0
[2026-03-07 08:20:10] 2026-03-07 13:19:17,951 | INFO     | sufficient remaining disk space (472048992256 B)
[2026-03-07 08:20:10] 2026-03-07 13:19:17,952 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 08:20:10] 2026-03-07 13:19:17,952 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 08:20:10] 2026-03-07 13:19:17,952 | INFO     | update_server=False
[2026-03-07 08:20:10] 2026-03-07 13:19:17,952 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 08:20:10] 2026-03-07 13:19:17,952 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 08:20:10] 2026-03-07 13:19:17,952 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 08:20:10] 2026-03-07 13:19:18,054 | INFO     | all job control threads have been joined
[2026-03-07 08:20:10] 2026-03-07 13:19:18,517 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 08:20:10] 2026-03-07 13:19:18,517 | INFO     | aborting loop
[2026-03-07 08:20:10] 2026-03-07 13:19:18,751 | INFO     | all data control threads have been joined
[2026-03-07 08:20:10] 2026-03-07 13:19:18,923 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 08:20:10] 2026-03-07 13:19:18,957 | INFO     | [job] retrieve thread has finished
[2026-03-07 08:20:10] 2026-03-07 13:19:18,957 | INFO     | [job] queue monitor thread has finished
[2026-03-07 08:20:10] 2026-03-07 13:19:19,057 | INFO     | [job] control thread has finished
[2026-03-07 08:20:10] 2026-03-07 13:19:19,148 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 08:20:10] 2026-03-07 13:19:19,317 | INFO     | all payload control threads have been joined
[2026-03-07 08:20:10] 2026-03-07 13:19:19,365 | INFO     | [payload] validate_post thread has finished
[2026-03-07 08:20:10] 2026-03-07 13:19:19,521 | INFO     | [job] job monitor thread has finished
[2026-03-07 08:20:10] 2026-03-07 13:19:19,603 | INFO     | [payload] failed_post thread has finished
[2026-03-07 08:20:10] 2026-03-07 13:19:19,756 | INFO     | [data] control thread has finished
[2026-03-07 08:20:10] 2026-03-07 13:19:20,264 | INFO     | [job] validate thread has finished
[2026-03-07 08:20:10] 2026-03-07 13:19:20,322 | INFO     | [payload] control thread has finished
[2026-03-07 08:20:10] 2026-03-07 13:19:20,339 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 08:20:10] 2026-03-07 13:19:20,384 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 08:20:10] 2026-03-07 13:19:20,426 | INFO     | [data] copytool_in thread has finished
[2026-03-07 08:20:10] 2026-03-07 13:19:20,928 | INFO     | [data] copytool_out thread has finished
[2026-03-07 08:20:10] 2026-03-07 13:19:21,957 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 08:20:10] 2026-03-07 13:19:28,103 | INFO     | job.realtimelogging is not enabled
[2026-03-07 08:20:10] 2026-03-07 13:19:29,108 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 08:20:10] 2026-03-07 13:19:48,821 | INFO     | PID=96293 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-07 08:20:10] 2026-03-07 13:19:48,821 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 08:20:10] 2026-03-07 13:19:48,821 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 08:20:10] 2026-03-07 13:19:48,821 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 08:20:10] 2026-03-07 13:20:05,088 | INFO     | [monitor] cgroup control has ended
[2026-03-07 08:20:10] 2026-03-07 13:20:05,172 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 128398243292992)>', '<ExcThread(monitor, started 128397753698048)>']
[2026-03-07 08:20:10] 2026-03-07 13:20:05,904 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 08:20:10] 2026-03-07 13:20:05,904 | INFO     | [monitor] control thread has ended
[2026-03-07 08:20:10] 2026-03-07 13:20:10,188 | INFO     | all workflow threads have been joined
[2026-03-07 08:20:10] 2026-03-07 13:20:10,188 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 08:20:10] 2026-03-07 13:20:10,188 | INFO     | traces error code: 0
[2026-03-07 08:20:10] 2026-03-07 13:20:10,188 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 08:20:10] 2026-03-07 13:20:10,229 [wrapper] ==== pilot stdout END ====
[2026-03-07 08:20:10] 2026-03-07 13:20:10,231 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 08:20:10] 2026-03-07 13:20:10,232 [wrapper] pilotpid: 96293
[2026-03-07 08:20:10] 2026-03-07 13:20:10,233 [wrapper] Pilot exit status: 0
[2026-03-07 08:20:10] 2026-03-07 13:20:10,237 [wrapper] pandaids: 7038619053
[2026-03-07 08:20:10] 2026-03-07 13:20:10,248 [wrapper] cleanup supervisor_pilot  140254 96294
[2026-03-07 08:20:10] 2026-03-07 13:20:10,249 [wrapper] Test setup, not cleaning
[2026-03-07 08:20:10] 2026-03-07 13:20:10,250 [wrapper] apfmon messages muted
[2026-03-07 08:20:10] 2026-03-07 13:20:10,251 [wrapper] ==== wrapper stdout END ====
[2026-03-07 08:20:10] 2026-03-07 13:20:10,253 [wrapper] ==== wrapper stderr END ====
[2026-03-07 08:20:10]  *** Error codes and diagnostics ***
[2026-03-07 08:20:10]     "exeErrorCode": 0,
[2026-03-07 08:20:10]     "exeErrorDiag": "",
[2026-03-07 08:20:10]     "pilotErrorCode": 0,
[2026-03-07 08:20:10]     "pilotErrorDiag": "",
[2026-03-07 08:20:10]  *** Listing of results directory ***
[2026-03-07 08:20:10] total 606664
[2026-03-07 08:20:10] -rw-r--r-- 1 root root      5111 Mar  5 05:54 queuedata.json
[2026-03-07 08:20:10] -rw-r--r-- 1 root root    584627 Mar  5 05:54 pilot3.tar.gz
[2026-03-07 08:20:10] -rwx------ 1 4871 1028     36322 Mar  5 05:55 runpilot2-wrapper.sh
[2026-03-07 08:20:10] -rw-r--r-- 1 root root       100 Mar  7 07:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 08:20:10] -rwxr-xr-x 1 root root      7986 Mar  7 07:48 run_atlas
[2026-03-07 08:20:10] -rw-r--r-- 1 root root       105 Mar  7 07:48 job.xml
[2026-03-07 08:20:10] -rw-r--r-- 2 root root 436841304 Mar  7 07:48 EVNT.46701403._000113.pool.root.1
[2026-03-07 08:20:10] -rw-r--r-- 2 root root    597950 Mar  7 07:48 input.tar.gz
[2026-03-07 08:20:10] -rw-r--r-- 2 root root     15845 Mar  7 07:48 start_atlas.sh
[2026-03-07 08:20:10] drwxrwx--x 2 root root      4096 Mar  7 07:48 shared
[2026-03-07 08:20:10] -rw-r--r-- 1 root root         0 Mar  7 07:48 boinc_setup_complete
[2026-03-07 08:20:10] -rw-r--r-- 1 root root      9050 Mar  7 07:48 init_data.xml
[2026-03-07 08:20:10] -rw-r--r-- 1 root root         0 Mar  7 07:48 boinc_lockfile
[2026-03-07 08:20:10] -rw-r--r-- 1 root root      2562 Mar  7 07:48 pandaJob.out
[2026-03-07 08:20:10] -rw------- 1 root root    999177 Mar  7 07:48 agis_schedconf.cvmfs.json
[2026-03-07 08:20:10] -rw------- 1 root root   1521291 Mar  7 07:49 agis_ddmendpoints.agis.ALL.json
[2026-03-07 08:20:10] -rw------- 1 root root       406 Mar  7 07:49 workernode_map.json
[2026-03-07 08:20:10] drwxr-xr-x 5  320  320      4096 Mar  7 07:49 pilot3
[2026-03-07 08:20:10] -rw------- 1 root root 179119954 Mar  7 08:18 HITS.48955006._005628.pool.root.1
[2026-03-07 08:20:10] -rw------- 1 root root      1007 Mar  7 08:19 memory_monitor_summary.json
[2026-03-07 08:20:10] -rw-r--r-- 1 root root       529 Mar  7 08:19 boinc_task_state.xml
[2026-03-07 08:20:10] -rw------- 1 root root    362184 Mar  7 08:19 log.48955006._005628.job.log.tgz.1
[2026-03-07 08:20:10] -rw------- 1 root root      6249 Mar  7 08:19 heartbeat.json
[2026-03-07 08:20:10] -rw-r--r-- 1 root root        26 Mar  7 08:19 wrapper_checkpoint.txt
[2026-03-07 08:20:10] -rw-r--r-- 1 root root      8192 Mar  7 08:19 boinc_mmap_file
[2026-03-07 08:20:10] -rw------- 1 root root        95 Mar  7 08:19 pilot_heartbeat.json
[2026-03-07 08:20:10] -rw------- 1 root root      4813 Mar  7 08:20 pilotlog.txt
[2026-03-07 08:20:10] -rw------- 1 root root    299932 Mar  7 08:20 log.48955006._005628.job.log.1
[2026-03-07 08:20:10] -rw------- 1 root root       357 Mar  7 08:20 output.list
[2026-03-07 08:20:10] -rw-r--r-- 1 root root       620 Mar  7 08:20 runtime_log
[2026-03-07 08:20:10] -rw------- 1 root root    675840 Mar  7 08:20 result.tar.gz
[2026-03-07 08:20:10] -rw-r--r-- 1 root root      8728 Mar  7 08:20 runtime_log.err
[2026-03-07 08:20:10] -rw------- 1 root root       639 Mar  7 08:20 PG3LDm6XLI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmIcNLDmpGHLMm.diag
[2026-03-07 08:20:10] -rw-r--r-- 1 root root     20886 Mar  7 08:20 stderr.txt
[2026-03-07 08:20:10] HITS file was successfully produced:
[2026-03-07 08:20:10] -rw------- 1 root root 179119954 Mar  7 08:18 shared/HITS.pool.root.1
[2026-03-07 08:20:10]  *** Contents of shared directory: ***
[2026-03-07 08:20:10] total 602796
[2026-03-07 08:20:10] -rw-r--r-- 2 root root 436841304 Mar  7 07:48 ATLAS.root_0
[2026-03-07 08:20:10] -rw-r--r-- 2 root root    597950 Mar  7 07:48 input.tar.gz
[2026-03-07 08:20:10] -rw-r--r-- 2 root root     15845 Mar  7 07:48 start_atlas.sh
[2026-03-07 08:20:10] -rw------- 1 root root 179119954 Mar  7 08:18 HITS.pool.root.1
[2026-03-07 08:20:10] -rw------- 1 root root    675840 Mar  7 08:20 result.tar.gz
08:20:11 (91997): run_atlas exited; CPU time 8437.316152
08:20:11 (91997): called boinc_finish(0)

</stderr_txt>
]]>

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