Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:20:34 (2191931): wrapper (7.7.26015): starting
11:20:34 (2191931): wrapper: running run_atlas (--nthreads 8)
[2026-03-05 11:20:34] Arguments: --nthreads 8
[2026-03-05 11:20:34] Threads: 8
[2026-03-05 11:20:34] Checking for CVMFS
[2026-03-05 11:20:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-05 11:20:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-05 11:20:35] Running cvmfs_config stat atlas.cern.ch
[2026-03-05 11:20:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-05 11:20:36] 2.13.3.0 2252556 41592 387220 156924 0 778 24544527 32935937 31171 16776704 1 118654763 99.481 159229430 12484 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-05 11:20:36] CVMFS is ok
[2026-03-05 11:20:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-05 11:20:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-05 11:20:36] Further information can be found at the LHC@home message board.
[2026-03-05 11:20:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 11:20:36] Checking for apptainer binary...
[2026-03-05 11:20:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-05 11:20:36] Running /usr/bin/apptainer --version
[2026-03-05 11:20:36] apptainer version 1.4.5-2.el9
[2026-03-05 11:20:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 11:20:37] c6-12-27-3.aglt2.org
[2026-03-05 11:20:37] apptainer works
[2026-03-05 11:20:37] Set ATHENA_PROC_NUMBER=8
[2026-03-05 11:20:37] Set ATHENA_CORE_NUMBER=8
[2026-03-05 11:20:37] Starting ATLAS job with PandaID=7036289536
[2026-03-05 11:20:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 20:35:23]  *** The last 200 lines of the pilot log: ***
[2026-03-05 20:35:24] 2026-03-06 01:34:43,735 | INFO     | reading metadata from: /tmp/boinchome/slots/3/PanDA_Pilot-7036289536/jobReport.json
[2026-03-05 20:35:24] 2026-03-06 01:34:43,738 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/3/workernode_map.json
[2026-03-05 20:35:24] 2026-03-06 01:34:43,738 | INFO     | this job has now completed (state=finished)
[2026-03-05 20:35:24] 2026-03-06 01:34:43,738 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-05 20:35:24] 2026-03-06 01:34:43,738 | INFO     | log transfer has been attempted: DONE
[2026-03-05 20:35:24] 2026-03-06 01:34:43,739 | INFO     | job 7036289536 has finished - writing final server update
[2026-03-05 20:35:24] 2026-03-06 01:34:43,755 | INFO     | total number of processed events: 400 (read)
[2026-03-05 20:35:24] 2026-03-06 01:34:43,890 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-7036289536/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 20:35:24] 2026-03-06 01:34:43,908 | INFO     | extracted standard info from prmon json
[2026-03-05 20:35:24] 2026-03-06 01:34:43,909 | INFO     | extracted standard memory fields from prmon json
[2026-03-05 20:35:24] 2026-03-06 01:34:43,909 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-05 20:35:24] 2026-03-06 01:34:43,909 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-05 20:35:24] 2026-03-06 01:34:43,909 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-05 20:35:24] 2026-03-06 01:34:43,941 | INFO     | fitting pss+swap vs Time
[2026-03-05 20:35:24] 2026-03-06 01:34:43,942 | INFO     | sum of square deviations: 49370736873.595955
[2026-03-05 20:35:24] 2026-03-06 01:34:43,964 | INFO     | sum of deviations: 53389067685.04795
[2026-03-05 20:35:24] 2026-03-06 01:34:44,013 | INFO     | mean x: 1772744306.5848708
[2026-03-05 20:35:24] 2026-03-06 01:34:44,013 | INFO     | mean y: 2544657.5424354244
[2026-03-05 20:35:24] 2026-03-06 01:34:44,013 | INFO     | intersect: -1914484979.1604433
[2026-03-05 20:35:24] 2026-03-06 01:34:44,014 | INFO     | chi2: 3.8153941564503127
[2026-03-05 20:35:24] 2026-03-06 01:34:44,015 | INFO     | sum of square deviations: 48016948776.05958
[2026-03-05 20:35:24] 2026-03-06 01:34:44,056 | INFO     | sum of deviations: 91647114482.94601
[2026-03-05 20:35:24] 2026-03-06 01:34:44,056 | INFO     | mean x: 1772744154.0856612
[2026-03-05 20:35:24] 2026-03-06 01:34:44,056 | INFO     | mean y: 2548934.1098696464
[2026-03-05 20:35:24] 2026-03-06 01:34:44,056 | INFO     | intersect: -3380983143.202487
[2026-03-05 20:35:24] 2026-03-06 01:34:44,057 | INFO     | chi2: 2.946047867434858
[2026-03-05 20:35:24] 2026-03-06 01:34:44,057 | INFO     | current chi2=2.946047867434858 (change=22.78522882218437 %)
[2026-03-05 20:35:24] 2026-03-06 01:34:44,057 | INFO     | right removable region: 536
[2026-03-05 20:35:24] 2026-03-06 01:34:44,058 | INFO     | sum of square deviations: 48016920716.05958
[2026-03-05 20:35:24] 2026-03-06 01:34:44,081 | INFO     | sum of deviations: -87103385970.51016
[2026-03-05 20:35:24] 2026-03-06 01:34:44,082 | INFO     | mean x: 1772744459.0856612
[2026-03-05 20:35:24] 2026-03-06 01:34:44,082 | INFO     | mean y: 2560459.1415270017
[2026-03-05 20:35:24] 2026-03-06 01:34:44,082 | INFO     | intersect: 3218344448.288034
[2026-03-05 20:35:24] 2026-03-06 01:34:44,083 | INFO     | chi2: 1.3181358007592865
[2026-03-05 20:35:24] 2026-03-06 01:34:44,083 | INFO     | current chi2=1.3181358007592865 (change=65.4521722603458 %)
[2026-03-05 20:35:24] 2026-03-06 01:34:44,133 | INFO     | sum of square deviations: 46688114405.19364
[2026-03-05 20:35:24] 2026-03-06 01:34:44,191 | INFO     | sum of deviations: -109379068807.93988
[2026-03-05 20:35:24] 2026-03-06 01:34:44,191 | INFO     | mean x: 1772744611.5845864
[2026-03-05 20:35:24] 2026-03-06 01:34:44,191 | INFO     | mean y: 2563007.909774436
[2026-03-05 20:35:24] 2026-03-06 01:34:44,191 | INFO     | intersect: 4155679005.8401885
[2026-03-05 20:35:24] 2026-03-06 01:34:44,192 | INFO     | chi2: 1.2300527389236418
[2026-03-05 20:35:24] 2026-03-06 01:34:44,192 | INFO     | current chi2=1.2300527389236418 (change=6.682396592589793 %)
[2026-03-05 20:35:24] 2026-03-06 01:34:44,192 | INFO     | left removable region: 20
[2026-03-05 20:35:24] 2026-03-06 01:34:44,193 | INFO     | sum of square deviations: 42601065481.41675
[2026-03-05 20:35:24] 2026-03-06 01:34:44,230 | INFO     | monitor loop #2000: job 0:7036289536 is in state 'finished'
[2026-03-05 20:35:24] 2026-03-06 01:34:44,230 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-05 20:35:24] 2026-03-06 01:34:44,241 | INFO     | sum of deviations: -32732605901.49999
[2026-03-05 20:35:24] 2026-03-06 01:34:44,241 | INFO     | mean x: 1772744733.5833333
[2026-03-05 20:35:24] 2026-03-06 01:34:44,241 | INFO     | mean y: 2562969.430232558
[2026-03-05 20:35:24] 2026-03-06 01:34:44,241 | INFO     | intersect: 1364654599.5950916
[2026-03-05 20:35:24] 2026-03-06 01:34:44,242 | INFO     | chi2: 0.24871996374085867
[2026-03-05 20:35:24] 2026-03-06 01:34:44,242 | INFO     | current memory leak: -0.77 B/s (using 516 data points, chi2=0.25)
[2026-03-05 20:35:24] 2026-03-06 01:34:44,243 | INFO     | could have reported an average CPU frequency of 2751 MHz (22 samples)
[2026-03-05 20:35:24] 2026-03-06 01:34:44,243 | INFO     | ..............................
[2026-03-05 20:35:24] 2026-03-06 01:34:44,243 | INFO     | . Timing measurements:
[2026-03-05 20:35:24] 2026-03-06 01:34:44,243 | INFO     | . get job = 0 s
[2026-03-05 20:35:24] 2026-03-06 01:34:44,243 | INFO     | . initial setup = 34 s
[2026-03-05 20:35:24] 2026-03-06 01:34:44,243 | INFO     | . payload setup = 39 s
[2026-03-05 20:35:24] 2026-03-06 01:34:44,244 | INFO     | . stage-in = 0 s
[2026-03-05 20:35:24] 2026-03-06 01:34:44,244 | INFO     | . payload execution = 33085 s
[2026-03-05 20:35:24] 2026-03-06 01:34:44,244 | INFO     | . stage-out = 8 s
[2026-03-05 20:35:24] 2026-03-06 01:34:44,244 | INFO     | . log creation = 1 s
[2026-03-05 20:35:24] 2026-03-06 01:34:44,244 | INFO     | ..............................
[2026-03-05 20:35:24] 2026-03-06 01:34:45,283 | INFO     | 
[2026-03-05 20:35:24] 2026-03-06 01:34:45,284 | INFO     | job summary report
[2026-03-05 20:35:24] 2026-03-06 01:34:45,284 | INFO     | --------------------------------------------------
[2026-03-05 20:35:24] 2026-03-06 01:34:45,284 | INFO     | PanDA job id: 7036289536
[2026-03-05 20:35:24] 2026-03-06 01:34:45,284 | INFO     | task id: 48838577
[2026-03-05 20:35:24] 2026-03-06 01:34:45,284 | INFO     | errors: (none)
[2026-03-05 20:35:24] 2026-03-06 01:34:45,284 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-05 20:35:24] 2026-03-06 01:34:45,284 | INFO     | pilot state: finished 
[2026-03-05 20:35:24] 2026-03-06 01:34:45,284 | INFO     | transexitcode: 0
[2026-03-05 20:35:24] 2026-03-06 01:34:45,284 | INFO     | exeerrorcode: 0
[2026-03-05 20:35:24] 2026-03-06 01:34:45,284 | INFO     | exeerrordiag: 
[2026-03-05 20:35:24] 2026-03-06 01:34:45,284 | INFO     | exitcode: 0
[2026-03-05 20:35:24] 2026-03-06 01:34:45,284 | INFO     | exitmsg: OK
[2026-03-05 20:35:24] 2026-03-06 01:34:45,284 | INFO     | cpuconsumptiontime: 53935 s
[2026-03-05 20:35:24] 2026-03-06 01:34:45,285 | INFO     | nevents: 400
[2026-03-05 20:35:24] 2026-03-06 01:34:45,285 | INFO     | neventsw: 0
[2026-03-05 20:35:24] 2026-03-06 01:34:45,285 | INFO     | pid: 2213229
[2026-03-05 20:35:24] 2026-03-06 01:34:45,285 | INFO     | pgrp: 2213229
[2026-03-05 20:35:24] 2026-03-06 01:34:45,285 | INFO     | corecount: 8
[2026-03-05 20:35:24] 2026-03-06 01:34:45,285 | INFO     | event service: False
[2026-03-05 20:35:24] 2026-03-06 01:34:45,285 | INFO     | sizes: {0: 2295326, 1: 2295382, 2: 2295438, 3: 2295899, 4: 2295899, 33130: 2335504, 33140: 2344502, 33143: 2344558, 33145: 2344752}
[2026-03-05 20:35:24] 2026-03-06 01:34:45,285 | INFO     | --------------------------------------------------
[2026-03-05 20:35:24] 2026-03-06 01:34:45,285 | INFO     | 
[2026-03-05 20:35:24] 2026-03-06 01:34:45,285 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-03-05 20:35:24] 2026-03-06 01:34:45,402 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-05 20:35:24] 2026-03-06 01:34:45,402 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-05 20:35:24] 2026-03-06 01:34:45,403 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-05 20:35:24] 2026-03-06 01:34:45,403 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-05 20:35:24] 2026-03-06 01:34:45,403 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-05 20:35:24] 2026-03-06 01:34:45,403 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-05 20:35:24] 2026-03-06 01:34:45,403 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-05 20:35:24] 2026-03-06 01:34:45,403 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-05 20:35:24] 2026-03-06 01:34:45,403 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-05 20:35:24] 2026-03-06 01:34:45,403 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-05 20:35:24] 2026-03-06 01:34:45,403 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-05 20:35:24] 2026-03-06 01:34:45,403 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-05 20:35:24] 2026-03-06 01:34:45,403 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-05 20:35:24] 2026-03-06 01:34:45,403 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-05 20:35:24] 2026-03-06 01:34:45,404 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-05 20:35:24] 2026-03-06 01:34:45,404 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-05 20:35:24] 2026-03-06 01:34:45,404 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-05 20:35:24] 2026-03-06 01:34:45,404 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-05 20:35:24] 2026-03-06 01:34:45,404 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-05 20:35:24] 2026-03-06 01:34:45,404 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-05 20:35:24] 2026-03-06 01:34:45,404 | INFO     | job 7036289536 has completed (purged errors)
[2026-03-05 20:35:24] 2026-03-06 01:34:45,404 | INFO     | overall cleanup function is called
[2026-03-05 20:35:24] 2026-03-06 01:34:46,492 | INFO     | --- collectZombieJob: --- 10, [2213229]
[2026-03-05 20:35:24] 2026-03-06 01:34:46,493 | INFO     | zombie collector waiting for pid 2213229
[2026-03-05 20:35:24] 2026-03-06 01:34:46,493 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 20:35:24] 2026-03-06 01:34:46,493 | INFO     | collected zombie processes
[2026-03-05 20:35:24] 2026-03-06 01:34:46,493 | INFO     | will attempt to kill all subprocesses of pid=2213229
[2026-03-05 20:35:24] 2026-03-06 01:34:48,340 | INFO     | PID=2202045 has CPU usage=13.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-05 20:35:24] 2026-03-06 01:34:48,340 | INFO     | .. there are 45 such processes running
[2026-03-05 20:35:24] 2026-03-06 01:34:49,695 | INFO     | process IDs to be killed: [2213229] (in reverse order)
[2026-03-05 20:35:24] 2026-03-06 01:34:49,978 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 20:35:24] 2026-03-06 01:34:49,978 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 20:35:24] 2026-03-06 01:34:50,117 | INFO     | did not find any defunct processes belonging to 2213229
[2026-03-05 20:35:24] 2026-03-06 01:34:50,180 | INFO     | did not find any defunct processes belonging to 2213229
[2026-03-05 20:35:24] 2026-03-06 01:34:50,180 | INFO     | ready for new job
[2026-03-05 20:35:24] 2026-03-06 01:34:50,180 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 20:35:24] 2026-03-06 01:34:50,193 | INFO     | **************************************
[2026-03-05 20:35:24] 2026-03-06 01:34:50,193 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 20:35:24] 2026-03-06 01:34:50,194 | INFO     | **************************************
[2026-03-05 20:35:24] 2026-03-06 01:34:50,194 | INFO     | 
[2026-03-05 20:35:24] 2026-03-06 01:34:50,231 | INFO     | architecture information:
[2026-03-05 20:35:24] 2026-03-06 01:34:50,232 | INFO     | executing command: cat /etc/os-release
[2026-03-05 20:35:24] 2026-03-06 01:34:50,312 | INFO     | cat /etc/os-release:
[2026-03-05 20:35:24] NAME="CentOS Linux"
[2026-03-05 20:35:24] VERSION="7 (Core)"
[2026-03-05 20:35:24] ID="centos"
[2026-03-05 20:35:24] ID_LIKE="rhel fedora"
[2026-03-05 20:35:24] VERSION_ID="7"
[2026-03-05 20:35:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 20:35:24] ANSI_COLOR="0;31"
[2026-03-05 20:35:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 20:35:24] HOME_URL="https://www.centos.org/"
[2026-03-05 20:35:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 20:35:24] 
[2026-03-05 20:35:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 20:35:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 20:35:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 20:35:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 20:35:24] 
[2026-03-05 20:35:24] 2026-03-06 01:34:50,312 | INFO     | **************************************
[2026-03-05 20:35:24] 2026-03-06 01:34:50,816 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-03-05 20:35:24] 2026-03-06 01:34:50,872 | INFO     | sufficient remaining disk space (93024419840 B)
[2026-03-05 20:35:24] 2026-03-06 01:34:50,872 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 20:35:24] 2026-03-06 01:34:50,873 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 20:35:24] 2026-03-06 01:34:50,873 | INFO     | update_server=False
[2026-03-05 20:35:24] 2026-03-06 01:34:50,873 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 20:35:24] 2026-03-06 01:34:50,873 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 20:35:24] 2026-03-06 01:34:50,873 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 20:35:24] 2026-03-06 01:34:50,874 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 20:35:24] 2026-03-06 01:34:50,874 | INFO     | aborting loop
[2026-03-05 20:35:24] 2026-03-06 01:34:51,196 | INFO     | all job control threads have been joined
[2026-03-05 20:35:24] 2026-03-06 01:34:51,707 | INFO     | all data control threads have been joined
[2026-03-05 20:35:24] 2026-03-06 01:34:51,879 | INFO     | [job] retrieve thread has finished
[2026-03-05 20:35:24] 2026-03-06 01:34:51,879 | INFO     | [job] queue monitor thread has finished
[2026-03-05 20:35:24] 2026-03-06 01:34:51,893 | INFO     | [job] job monitor thread has finished
[2026-03-05 20:35:24] 2026-03-06 01:34:51,894 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 20:35:24] 2026-03-06 01:34:51,972 | INFO     | [job] validate thread has finished
[2026-03-05 20:35:24] 2026-03-06 01:34:52,021 | INFO     | all payload control threads have been joined
[2026-03-05 20:35:24] 2026-03-06 01:34:52,185 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 20:35:24] 2026-03-06 01:34:52,202 | INFO     | [job] control thread has finished
[2026-03-05 20:35:24] 2026-03-06 01:34:52,713 | INFO     | [data] control thread has finished
[2026-03-05 20:35:24] 2026-03-06 01:34:52,807 | INFO     | [payload] validate_post thread has finished
[2026-03-05 20:35:24] 2026-03-06 01:34:52,880 | INFO     | [data] copytool_out thread has finished
[2026-03-05 20:35:24] 2026-03-06 01:34:52,900 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 20:35:24] 2026-03-06 01:34:52,900 | INFO     | [data] copytool_in thread has finished
[2026-03-05 20:35:24] 2026-03-06 01:34:53,027 | INFO     | [payload] control thread has finished
[2026-03-05 20:35:24] 2026-03-06 01:34:53,042 | INFO     | [payload] failed_post thread has finished
[2026-03-05 20:35:24] 2026-03-06 01:34:53,091 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 20:35:24] 2026-03-06 01:34:53,833 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 20:35:24] 2026-03-06 01:34:57,842 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 20:35:24] 2026-03-06 01:35:13,204 | INFO     | [monitor] cgroup control has ended
[2026-03-05 20:35:24] 2026-03-06 01:35:14,257 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140181426321216)>', '<ExcThread(monitor, started 140180459603712)>']
[2026-03-05 20:35:24] 2026-03-06 01:35:19,283 | INFO     | all workflow threads have been joined
[2026-03-05 20:35:24] 2026-03-06 01:35:19,283 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 20:35:24] 2026-03-06 01:35:19,283 | INFO     | traces error code: 0
[2026-03-05 20:35:24] 2026-03-06 01:35:19,284 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 20:35:24] 2026-03-06 01:35:21,502 | INFO     | PID=2202045 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-05 20:35:24] 2026-03-06 01:35:21,502 | INFO     | .. there are 45 such processes running
[2026-03-05 20:35:24] 2026-03-06 01:35:21,502 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 20:35:24] 2026-03-06 01:35:21,502 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 20:35:24] 2026-03-06 01:35:21,502 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 20:35:24] 2026-03-06 01:35:21,502 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 20:35:24] 2026-03-06 01:35:21,502 | INFO     | [monitor] control thread has ended
[2026-03-05 20:35:24] 2026-03-06 01:35:22,404 [wrapper] ==== pilot stdout END ====
[2026-03-05 20:35:24] 2026-03-06 01:35:22,407 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 20:35:24] 2026-03-06 01:35:22,410 [wrapper] pilotpid: 2202045
[2026-03-05 20:35:24] 2026-03-06 01:35:22,412 [wrapper] Pilot exit status: 0
[2026-03-05 20:35:24] 2026-03-06 01:35:22,466 [wrapper] pandaids: 7036289536
[2026-03-05 20:35:24] 2026-03-06 01:35:23,233 [wrapper] cleanup supervisor_pilot  217302 2202046
[2026-03-05 20:35:24] 2026-03-06 01:35:23,244 [wrapper] Test setup, not cleaning
[2026-03-05 20:35:24] 2026-03-06 01:35:23,280 [wrapper] apfmon messages muted
[2026-03-05 20:35:24] 2026-03-06 01:35:23,302 [wrapper] ==== wrapper stdout END ====
[2026-03-05 20:35:24] 2026-03-06 01:35:23,325 [wrapper] ==== wrapper stderr END ====
[2026-03-05 20:35:24]  *** Error codes and diagnostics ***
[2026-03-05 20:35:24]     "exeErrorCode": 0,
[2026-03-05 20:35:24]     "exeErrorDiag": "",
[2026-03-05 20:35:24]     "pilotErrorCode": 0,
[2026-03-05 20:35:24]     "pilotErrorDiag": "",
[2026-03-05 20:35:24]  *** Listing of results directory ***
[2026-03-05 20:35:24] total 520568
[2026-03-05 20:35:24] -rw-r--r--. 1 boincer umatlas    584627 Mar  3 06:44 pilot3.tar.gz
[2026-03-05 20:35:24] -rwx------. 1 boincer umatlas     36322 Mar  3 06:47 runpilot2-wrapper.sh
[2026-03-05 20:35:24] -rw-r--r--. 1 boincer umatlas      5111 Mar  3 06:49 queuedata.json
[2026-03-05 20:35:24] -rw-r--r--. 1 boincer umatlas       100 Mar  5 11:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 20:35:24] -rwxr-xr-x. 1 boincer umatlas      7986 Mar  5 11:20 run_atlas
[2026-03-05 20:35:24] -rw-r--r--. 1 boincer umatlas       105 Mar  5 11:20 job.xml
[2026-03-05 20:35:24] -rw-r--r--. 2 boincer umatlas 290078933 Mar  5 11:20 EVNT.48220197._000139.pool.root.1
[2026-03-05 20:35:24] -rw-r--r--. 2 boincer umatlas     15845 Mar  5 11:20 start_atlas.sh
[2026-03-05 20:35:24] drwxrwx--x. 2 boincer umatlas      4096 Mar  5 11:20 shared
[2026-03-05 20:35:24] -rw-r--r--. 2 boincer umatlas    597973 Mar  5 11:20 input.tar.gz
[2026-03-05 20:35:24] -rw-r--r--. 1 boincer umatlas         0 Mar  5 11:20 boinc_lockfile
[2026-03-05 20:35:24] -rw-r--r--. 1 boincer umatlas      2567 Mar  5 11:20 pandaJob.out
[2026-03-05 20:35:24] -rw-------. 1 boincer umatlas        57 Mar  5 11:20 setup.sh.local
[2026-03-05 20:35:24] -rw-------. 1 boincer umatlas    998462 Mar  5 11:21 agis_schedconf.cvmfs.json
[2026-03-05 20:35:24] -rw-------. 1 boincer umatlas       444 Mar  5 11:22 workernode_map.json
[2026-03-05 20:35:24] drwx------. 5 boincer umatlas      4096 Mar  5 11:22 pilot3
[2026-03-05 20:35:24] -rw-r--r--. 1 boincer umatlas      6879 Mar  5 20:31 init_data.xml
[2026-03-05 20:35:24] -rw-------. 1 boincer umatlas 229409585 Mar  5 20:33 HITS.48838577._003575.pool.root.1
[2026-03-05 20:35:24] -rw-r--r--. 1 boincer umatlas       530 Mar  5 20:33 boinc_task_state.xml
[2026-03-05 20:35:24] -rw-------. 1 boincer umatlas      1045 Mar  5 20:34 memory_monitor_summary.json
[2026-03-05 20:35:24] -rw-------. 1 boincer umatlas   1521291 Mar  5 20:34 agis_ddmendpoints.agis.ALL.json
[2026-03-05 20:35:24] -rw-------. 1 boincer umatlas    698262 Mar  5 20:34 log.48838577._003575.job.log.tgz.1
[2026-03-05 20:35:24] -rw-------. 1 boincer umatlas      6396 Mar  5 20:34 heartbeat.json
[2026-03-05 20:35:24] -rw-------. 1 boincer umatlas        95 Mar  5 20:34 pilot_heartbeat.json
[2026-03-05 20:35:24] -rw-r--r--. 1 boincer umatlas      8192 Mar  5 20:35 boinc_mmap_file
[2026-03-05 20:35:24] -rw-------. 1 boincer umatlas       823 Mar  5 20:35 pilotlog.txt
[2026-03-05 20:35:24] -rw-r--r--. 1 boincer umatlas        28 Mar  5 20:35 wrapper_checkpoint.txt
[2026-03-05 20:35:24] -rw-------. 1 boincer umatlas   4118321 Mar  5 20:35 log.48838577._003575.job.log.1
[2026-03-05 20:35:24] -rw-------. 1 boincer umatlas       357 Mar  5 20:35 output.list
[2026-03-05 20:35:24] -rw-r--r--. 1 boincer umatlas       620 Mar  5 20:35 runtime_log
[2026-03-05 20:35:24] -rw-------. 1 boincer umatlas   4833280 Mar  5 20:35 result.tar.gz
[2026-03-05 20:35:24] -rw-------. 1 boincer umatlas       660 Mar  5 20:35 Sk4NDm0OdH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmGYGLDmf0eS6m.diag
[2026-03-05 20:35:24] -rw-r--r--. 1 boincer umatlas      9352 Mar  5 20:35 runtime_log.err
[2026-03-05 20:35:24] -rw-r--r--. 1 boincer umatlas     21467 Mar  5 20:35 stderr.txt
[2026-03-05 20:35:24] HITS file was successfully produced:
[2026-03-05 20:35:24] -rw-------. 1 boincer umatlas 229409585 Mar  5 20:33 shared/HITS.pool.root.1
[2026-03-05 20:35:24]  *** Contents of shared directory: ***
[2026-03-05 20:35:24] total 512648
[2026-03-05 20:35:24] -rw-r--r--. 2 boincer umatlas 290078933 Mar  5 11:20 ATLAS.root_0
[2026-03-05 20:35:24] -rw-r--r--. 2 boincer umatlas     15845 Mar  5 11:20 start_atlas.sh
[2026-03-05 20:35:24] -rw-r--r--. 2 boincer umatlas    597973 Mar  5 11:20 input.tar.gz
[2026-03-05 20:35:24] -rw-------. 1 boincer umatlas 229409585 Mar  5 20:33 HITS.pool.root.1
[2026-03-05 20:35:24] -rw-------. 1 boincer umatlas   4833280 Mar  5 20:35 result.tar.gz
20:35:25 (2191931): run_atlas exited; CPU time 55885.209012
20:35:25 (2191931): called boinc_finish(0)

</stderr_txt>
]]>

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