Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
17:29:38 (31763): wrapper (7.7.26015): starting
17:29:38 (31763): wrapper: running run_atlas (--nthreads 8)
[2026-03-05 17:29:38] Arguments: --nthreads 8
[2026-03-05 17:29:38] Threads: 8
[2026-03-05 17:29:38] Checking for CVMFS
[2026-03-05 17:29:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-05 17:29:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-05 17:29:38] Running cvmfs_config stat atlas.cern.ch
[2026-03-05 17:29:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-05 17:29:39] 2.11.0.0 4322 115079 82176 156926 0 188 3100393 4096001 4423 130560 0 4855574 99.505 6428240 318 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-05 17:29:39] CVMFS is ok
[2026-03-05 17:29:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-05 17:29:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-05 17:29:39] Further information can be found at the LHC@home message board.
[2026-03-05 17:29:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 17:29:39] Checking for apptainer binary...
[2026-03-05 17:29:39] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-05 17:29:39] apptainer is not installed, using version from CVMFS
[2026-03-05 17:29:39] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 17:29:39] WARNING: Environment variable TMPDIR already has value [/tmp/job_11258327/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node240
[2026-03-05 17:29:39] apptainer works
[2026-03-05 17:29:39] Set ATHENA_PROC_NUMBER=8
[2026-03-05 17:29:39] Set ATHENA_CORE_NUMBER=8
[2026-03-05 17:29:39] Starting ATLAS job with PandaID=7038573486
[2026-03-05 17:29:39] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11258327/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 18:20:20]  *** The last 200 lines of the pilot log: ***
[2026-03-05 18:20:20]  filesize=328904
[2026-03-05 18:20:20]  filetype=log
[2026-03-05 18:20:20]  guid=0142405e-73aa-4e48-84bf-76ab553847a5
[2026-03-05 18:20:20]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-05 18:20:20]  is_altstaged=None
[2026-03-05 18:20:20]  is_tar=False
[2026-03-05 18:20:20]  lfn=log.48955006._004036.job.log.tgz.1
[2026-03-05 18:20:20]  mtime=0
[2026-03-05 18:20:20]  protocol_id=None
[2026-03-05 18:20:20]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-05 18:20:20]  replicas=None
[2026-03-05 18:20:20]  scope=mc23_13p6TeV
[2026-03-05 18:20:20]  status=None
[2026-03-05 18:20:20]  status_code=0
[2026-03-05 18:20:20]  storage_token=
[2026-03-05 18:20:20]  surl=/tmp/job_11258327/atlas/pilot/slots/0/PanDA_Pilot-7038573486/log.48955006._004036.job.log.tgz.1
[2026-03-05 18:20:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e8/b5/log.48955006._004036.job.log.tgz.1
[2026-03-05 18:20:20]  workdir=None
[2026-03-05 18:20:20] ]
[2026-03-05 18:20:20] 2026-03-05 17:19:44,650 | INFO     | transferring file log.48955006._004036.job.log.tgz.1 from /tmp/job_11258327/atlas/pilot/slots/0/PanDA_Pilot-7038573486/log.48955006._004036.job.log.tgz.1 to /tmp/j
[2026-03-05 18:20:20] 2026-03-05 17:19:44,650 | INFO     | executing command: /usr/bin/env mv /tmp/job_11258327/atlas/pilot/slots/0/PanDA_Pilot-7038573486/log.48955006._004036.job.log.tgz.1 /tmp/job_11258327/atlas/pilot/sl
[2026-03-05 18:20:20] 2026-03-05 17:19:44,658 | INFO     | adding to output.list: log.48955006._004036.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e8/b5/log.48955006._004036.job.log.tg
[2026-03-05 18:20:20] 2026-03-05 17:19:44,658 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-05 18:20:20] 2026-03-05 17:19:44,658 | INFO     | summary of transferred files:
[2026-03-05 18:20:20] 2026-03-05 17:19:44,658 | INFO     |  -- lfn=log.48955006._004036.job.log.tgz.1, status_code=0, status=transferred
[2026-03-05 18:20:20] 2026-03-05 17:19:44,658 | INFO     | stage-out finished correctly
[2026-03-05 18:20:20] 2026-03-05 17:19:44,782 | INFO     | time since job start (2999s) is within the limit (349056.0s)
[2026-03-05 18:20:20] 2026-03-05 17:19:46,180 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-05 18:20:20] 2026-03-05 17:19:46,788 | INFO     | time since job start (3001s) is within the limit (349056.0s)
[2026-03-05 18:20:20] 2026-03-05 17:19:47,098 | INFO     | monitor loop #219: job 0:7038573486 is in state 'finished'
[2026-03-05 18:20:20] 2026-03-05 17:19:47,098 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-05 18:20:20] 2026-03-05 17:19:47,731 | INFO     | job 7038573486 has state=finished
[2026-03-05 18:20:20] 2026-03-05 17:19:47,731 | INFO     | preparing for final server update for job 7038573486 in state='finished'
[2026-03-05 18:20:20] 2026-03-05 17:19:47,731 | INFO     | reading metadata from: /tmp/job_11258327/atlas/pilot/slots/0/PanDA_Pilot-7038573486/jobReport.json
[2026-03-05 18:20:20] 2026-03-05 17:19:47,732 | INFO     | added worker_node to metadata from /tmp/job_11258327/atlas/pilot/slots/0/workernode_map.json
[2026-03-05 18:20:20] 2026-03-05 17:19:47,732 | INFO     | this job has now completed (state=finished)
[2026-03-05 18:20:20] 2026-03-05 17:19:47,732 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-05 18:20:20] 2026-03-05 17:19:47,733 | INFO     | log transfer has been attempted: DONE
[2026-03-05 18:20:20] 2026-03-05 17:19:47,733 | INFO     | job 7038573486 has finished - writing final server update
[2026-03-05 18:20:20] 2026-03-05 17:19:47,733 | INFO     | total number of processed events: 400 (read)
[2026-03-05 18:20:20] 2026-03-05 17:19:47,749 | INFO     | using path: /tmp/job_11258327/atlas/pilot/slots/0/PanDA_Pilot-7038573486/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 18:20:20] 2026-03-05 17:19:47,749 | INFO     | extracted standard info from prmon json
[2026-03-05 18:20:20] 2026-03-05 17:19:47,750 | INFO     | extracted standard memory fields from prmon json
[2026-03-05 18:20:20] 2026-03-05 17:19:47,750 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-05 18:20:20] 2026-03-05 17:19:47,750 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-05 18:20:20] 2026-03-05 17:19:47,750 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-05 18:20:20] 2026-03-05 17:19:47,750 | INFO     | fitting pss+swap vs Time
[2026-03-05 18:20:20] 2026-03-05 17:19:47,750 | INFO     | sum of square deviations: 22955928.97619046
[2026-03-05 18:20:20] 2026-03-05 17:19:47,751 | INFO     | sum of deviations: -190807300.73809522
[2026-03-05 18:20:20] 2026-03-05 17:19:47,751 | INFO     | mean x: 1772729756.6904762
[2026-03-05 18:20:20] 2026-03-05 17:19:47,751 | INFO     | mean y: 2551767.404761905
[2026-03-05 18:20:20] 2026-03-05 17:19:47,751 | INFO     | intersect: 14737297643.428234
[2026-03-05 18:20:20] 2026-03-05 17:19:47,751 | INFO     | chi2: 0.002786220174573974
[2026-03-05 18:20:20] 2026-03-05 17:19:47,751 | INFO     | current memory leak: -8.31 B/s (using 42 data points, chi2=0.00)
[2026-03-05 18:20:20] 2026-03-05 17:19:47,751 | INFO     | could have reported an average CPU frequency of 2786 MHz (5 samples)
[2026-03-05 18:20:20] 2026-03-05 17:19:47,751 | INFO     | ..............................
[2026-03-05 18:20:20] 2026-03-05 17:19:47,751 | INFO     | . Timing measurements:
[2026-03-05 18:20:20] 2026-03-05 17:19:47,751 | INFO     | . get job = 0 s
[2026-03-05 18:20:20] 2026-03-05 17:19:47,751 | INFO     | . initial setup = 2 s
[2026-03-05 18:20:20] 2026-03-05 17:19:47,751 | INFO     | . payload setup = 2 s
[2026-03-05 18:20:20] 2026-03-05 17:19:47,751 | INFO     | . stage-in = 0 s
[2026-03-05 18:20:20] 2026-03-05 17:19:47,751 | INFO     | . payload execution = 2981 s
[2026-03-05 18:20:20] 2026-03-05 17:19:47,751 | INFO     | . stage-out = 0 s
[2026-03-05 18:20:20] 2026-03-05 17:19:47,751 | INFO     | . log creation = 0 s
[2026-03-05 18:20:20] 2026-03-05 17:19:47,751 | INFO     | ..............................
[2026-03-05 18:20:20] 2026-03-05 17:19:48,009 | INFO     | 
[2026-03-05 18:20:20] 2026-03-05 17:19:48,010 | INFO     | job summary report
[2026-03-05 18:20:20] 2026-03-05 17:19:48,010 | INFO     | --------------------------------------------------
[2026-03-05 18:20:20] 2026-03-05 17:19:48,010 | INFO     | PanDA job id: 7038573486
[2026-03-05 18:20:20] 2026-03-05 17:19:48,010 | INFO     | task id: 48955006
[2026-03-05 18:20:20] 2026-03-05 17:19:48,010 | INFO     | errors: (none)
[2026-03-05 18:20:20] 2026-03-05 17:19:48,010 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-05 18:20:20] 2026-03-05 17:19:48,010 | INFO     | pilot state: finished 
[2026-03-05 18:20:20] 2026-03-05 17:19:48,010 | INFO     | transexitcode: 0
[2026-03-05 18:20:20] 2026-03-05 17:19:48,010 | INFO     | exeerrorcode: 0
[2026-03-05 18:20:20] 2026-03-05 17:19:48,010 | INFO     | exeerrordiag: 
[2026-03-05 18:20:20] 2026-03-05 17:19:48,010 | INFO     | exitcode: 0
[2026-03-05 18:20:20] 2026-03-05 17:19:48,010 | INFO     | exitmsg: OK
[2026-03-05 18:20:20] 2026-03-05 17:19:48,010 | INFO     | cpuconsumptiontime: 21407 s
[2026-03-05 18:20:20] 2026-03-05 17:19:48,010 | INFO     | nevents: 400
[2026-03-05 18:20:20] 2026-03-05 17:19:48,010 | INFO     | neventsw: 0
[2026-03-05 18:20:20] 2026-03-05 17:19:48,010 | INFO     | pid: 8073
[2026-03-05 18:20:20] 2026-03-05 17:19:48,010 | INFO     | pgrp: 8073
[2026-03-05 18:20:20] 2026-03-05 17:19:48,010 | INFO     | corecount: 8
[2026-03-05 18:20:20] 2026-03-05 17:19:48,010 | INFO     | event service: False
[2026-03-05 18:20:20] 2026-03-05 17:19:48,010 | INFO     | sizes: {0: 2295927, 11: 2295927, 2987: 2321462, 2988: 2330490, 2989: 2330546, 2991: 2330772}
[2026-03-05 18:20:20] 2026-03-05 17:19:48,010 | INFO     | --------------------------------------------------
[2026-03-05 18:20:20] 2026-03-05 17:19:48,010 | INFO     | 
[2026-03-05 18:20:20] 2026-03-05 17:19:48,010 | INFO     | executing command: ls -lF /tmp/job_11258327/atlas/pilot/slots/0
[2026-03-05 18:20:20] 2026-03-05 17:19:48,019 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-05 18:20:20] 2026-03-05 17:19:48,020 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-05 18:20:20] 2026-03-05 17:19:48,020 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-05 18:20:20] 2026-03-05 17:19:48,020 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-05 18:20:20] 2026-03-05 17:19:48,020 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-05 18:20:20] 2026-03-05 17:19:48,020 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-05 18:20:20] 2026-03-05 17:19:48,020 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-05 18:20:20] 2026-03-05 17:19:48,020 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-05 18:20:20] 2026-03-05 17:19:48,020 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-05 18:20:20] 2026-03-05 17:19:48,020 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-05 18:20:20] 2026-03-05 17:19:48,020 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-05 18:20:20] 2026-03-05 17:19:48,020 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-05 18:20:20] 2026-03-05 17:19:48,020 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-05 18:20:20] 2026-03-05 17:19:48,020 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-05 18:20:20] 2026-03-05 17:19:48,020 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-05 18:20:20] 2026-03-05 17:19:48,020 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-05 18:20:20] 2026-03-05 17:19:48,020 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-05 18:20:20] 2026-03-05 17:19:48,020 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-05 18:20:20] 2026-03-05 17:19:48,020 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-05 18:20:20] 2026-03-05 17:19:48,020 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-05 18:20:20] 2026-03-05 17:19:48,020 | INFO     | job 7038573486 has completed (purged errors)
[2026-03-05 18:20:20] 2026-03-05 17:19:48,020 | INFO     | overall cleanup function is called
[2026-03-05 18:20:20] 2026-03-05 17:19:49,026 | INFO     | --- collectZombieJob: --- 10, [8073]
[2026-03-05 18:20:20] 2026-03-05 17:19:49,026 | INFO     | zombie collector waiting for pid 8073
[2026-03-05 18:20:20] 2026-03-05 17:19:49,026 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 18:20:20] 2026-03-05 17:19:49,026 | INFO     | collected zombie processes
[2026-03-05 18:20:20] 2026-03-05 17:19:49,026 | INFO     | will attempt to kill all subprocesses of pid=8073
[2026-03-05 18:20:20] 2026-03-05 17:19:49,119 | INFO     | process IDs to be killed: [8073] (in reverse order)
[2026-03-05 18:20:20] 2026-03-05 17:19:49,152 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 18:20:20] 2026-03-05 17:19:49,152 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 18:20:20] 2026-03-05 17:19:49,156 | INFO     | did not find any defunct processes belonging to 8073
[2026-03-05 18:20:20] 2026-03-05 17:19:49,159 | INFO     | did not find any defunct processes belonging to 8073
[2026-03-05 18:20:20] 2026-03-05 17:19:49,159 | INFO     | ready for new job
[2026-03-05 18:20:20] 2026-03-05 17:19:49,159 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 18:20:20] 2026-03-05 17:19:49,159 | INFO     | **************************************
[2026-03-05 18:20:20] 2026-03-05 17:19:49,159 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 18:20:20] 2026-03-05 17:19:49,159 | INFO     | **************************************
[2026-03-05 18:20:20] 2026-03-05 17:19:49,159 | INFO     | 
[2026-03-05 18:20:20] 2026-03-05 17:19:49,174 | INFO     | architecture information:
[2026-03-05 18:20:20] 2026-03-05 17:19:49,174 | INFO     | executing command: cat /etc/os-release
[2026-03-05 18:20:20] 2026-03-05 17:19:49,180 | INFO     | cat /etc/os-release:
[2026-03-05 18:20:20] NAME="CentOS Linux"
[2026-03-05 18:20:20] VERSION="7 (Core)"
[2026-03-05 18:20:20] ID="centos"
[2026-03-05 18:20:20] ID_LIKE="rhel fedora"
[2026-03-05 18:20:20] VERSION_ID="7"
[2026-03-05 18:20:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 18:20:20] ANSI_COLOR="0;31"
[2026-03-05 18:20:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 18:20:20] HOME_URL="https://www.centos.org/"
[2026-03-05 18:20:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 18:20:20] 
[2026-03-05 18:20:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 18:20:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 18:20:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 18:20:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 18:20:20] 
[2026-03-05 18:20:20] 2026-03-05 17:19:49,180 | INFO     | **************************************
[2026-03-05 18:20:20] 2026-03-05 17:19:49,683 | INFO     | executing command: df -mP /tmp/job_11258327/atlas/pilot/slots/0
[2026-03-05 18:20:20] 2026-03-05 17:19:49,690 | INFO     | sufficient remaining disk space (225220493312 B)
[2026-03-05 18:20:20] 2026-03-05 17:19:49,690 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 18:20:20] 2026-03-05 17:19:49,690 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 18:20:20] 2026-03-05 17:19:49,690 | INFO     | update_server=False
[2026-03-05 18:20:20] 2026-03-05 17:19:49,690 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 18:20:20] 2026-03-05 17:19:49,690 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 18:20:20] 2026-03-05 17:19:49,802 | INFO     | [monitor] cgroup control has ended
[2026-03-05 18:20:20] 2026-03-05 17:19:50,071 | INFO     | all data control threads have been joined
[2026-03-05 18:20:20] 2026-03-05 17:19:50,221 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 18:20:20] 2026-03-05 17:19:50,367 | INFO     | all payload control threads have been joined
[2026-03-05 18:20:20] 2026-03-05 17:19:50,544 | INFO     | all job control threads have been joined
[2026-03-05 18:20:20] 2026-03-05 17:19:50,606 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 18:20:20] 2026-03-05 17:19:50,606 | INFO     | aborting loop
[2026-03-05 18:20:20] 2026-03-05 17:19:50,695 | INFO     | [job] retrieve thread has finished
[2026-03-05 18:20:20] 2026-03-05 17:19:50,695 | INFO     | [job] queue monitor thread has finished
[2026-03-05 18:20:20] 2026-03-05 17:19:50,738 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 18:20:20] 2026-03-05 17:19:50,785 | INFO     | [data] copytool_in thread has finished
[2026-03-05 18:20:20] 2026-03-05 17:19:50,895 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 18:20:20] 2026-03-05 17:19:51,076 | INFO     | [data] control thread has finished
[2026-03-05 18:20:20] 2026-03-05 17:19:51,133 | INFO     | [payload] validate_post thread has finished
[2026-03-05 18:20:20] 2026-03-05 17:19:51,372 | INFO     | [payload] control thread has finished
[2026-03-05 18:20:20] 2026-03-05 17:19:51,458 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 18:20:20] 2026-03-05 17:19:51,466 | INFO     | [payload] failed_post thread has finished
[2026-03-05 18:20:20] 2026-03-05 17:19:51,549 | INFO     | [job] control thread has finished
[2026-03-05 18:20:20] 2026-03-05 17:19:51,611 | INFO     | [job] job monitor thread has finished
[2026-03-05 18:20:20] 2026-03-05 17:19:51,943 | INFO     | [job] validate thread has finished
[2026-03-05 18:20:20] 2026-03-05 17:19:52,191 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 18:20:20] 2026-03-05 17:19:52,226 | INFO     | [data] copytool_out thread has finished
[2026-03-05 18:20:20] 2026-03-05 17:19:52,233 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 18:20:20] 2026-03-05 17:19:56,238 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 18:20:20] 2026-03-05 17:19:56,874 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456058971904)>']
[2026-03-05 18:20:20] 2026-03-05 17:20:01,899 | INFO     | all workflow threads have been joined
[2026-03-05 18:20:20] 2026-03-05 17:20:01,900 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 18:20:20] 2026-03-05 17:20:01,900 | INFO     | traces error code: 0
[2026-03-05 18:20:20] 2026-03-05 17:20:01,900 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 18:20:20] 2026-03-05 17:20:19,975 | INFO     | PID=3301 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-05 18:20:20] 2026-03-05 17:20:19,975 | INFO     | .. there are 3 such processes running
[2026-03-05 18:20:20] 2026-03-05 17:20:19,975 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 18:20:20] 2026-03-05 17:20:19,975 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 18:20:20] 2026-03-05 17:20:19,975 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 18:20:20] 2026-03-05 17:20:19,975 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 18:20:20] 2026-03-05 17:20:19,975 | INFO     | [monitor] control thread has ended
[2026-03-05 18:20:20] 2026-03-05 17:20:20,026 [wrapper] ==== pilot stdout END ====
[2026-03-05 18:20:20] 2026-03-05 17:20:20,027 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 18:20:20] 2026-03-05 17:20:20,029 [wrapper] pilotpid: 3301
[2026-03-05 18:20:20] 2026-03-05 17:20:20,030 [wrapper] Pilot exit status: 0
[2026-03-05 18:20:20] 2026-03-05 17:20:20,034 [wrapper] pandaids: 7038573486
[2026-03-05 18:20:20] 2026-03-05 17:20:20,054 [wrapper] cleanup supervisor_pilot 23422 3302
[2026-03-05 18:20:20] 2026-03-05 17:20:20,055 [wrapper] Test setup, not cleaning
[2026-03-05 18:20:20] 2026-03-05 17:20:20,056 [wrapper] apfmon messages muted
[2026-03-05 18:20:20] 2026-03-05 17:20:20,058 [wrapper] ==== wrapper stdout END ====
[2026-03-05 18:20:20] 2026-03-05 17:20:20,059 [wrapper] ==== wrapper stderr END ====
[2026-03-05 18:20:20]  *** Error codes and diagnostics ***
[2026-03-05 18:20:20]     "exeErrorCode": 0,
[2026-03-05 18:20:20]     "exeErrorDiag": "",
[2026-03-05 18:20:20]     "pilotErrorCode": 0,
[2026-03-05 18:20:20]     "pilotErrorDiag": "",
[2026-03-05 18:20:20]  *** Listing of results directory ***
[2026-03-05 18:20:20] total 616192
[2026-03-05 18:20:20] -rw------- 1 mf493845 unix-user    584627 Mar  5 09:08 pilot3.tar.gz
[2026-03-05 18:20:20] -rwx------ 1 mf493845 unix-user     36322 Mar  5 09:08 runpilot2-wrapper.sh
[2026-03-05 18:20:20] -rw------- 1 mf493845 unix-user      5111 Mar  5 09:10 queuedata.json
[2026-03-05 18:20:20] -rw------- 1 mf493845 unix-user       100 Mar  5 15:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 18:20:20] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar  5 15:35 run_atlas
[2026-03-05 18:20:20] -rw------- 1 mf493845 unix-user       105 Mar  5 15:35 job.xml
[2026-03-05 18:20:20] -rw-r--r-- 2 mf493845 unix-user     15845 Mar  5 17:29 start_atlas.sh
[2026-03-05 18:20:20] drwxrwx--x 2 mf493845 unix-user       100 Mar  5 17:29 shared
[2026-03-05 18:20:20] -rw-r--r-- 2 mf493845 unix-user    597953 Mar  5 17:29 input.tar.gz
[2026-03-05 18:20:20] -rw------- 1 mf493845 unix-user      6391 Mar  5 17:29 init_data.xml
[2026-03-05 18:20:20] -rw-r--r-- 2 mf493845 unix-user 446856810 Mar  5 17:29 EVNT.46701403._000081.pool.root.1
[2026-03-05 18:20:20] -rw------- 1 mf493845 unix-user         0 Mar  5 17:29 boinc_setup_complete
[2026-03-05 18:20:20] -rw------- 1 mf493845 unix-user      8192 Mar  5 17:29 boinc_mmap_file
[2026-03-05 18:20:20] -rw------- 1 mf493845 unix-user         0 Mar  5 17:29 boinc_lockfile
[2026-03-05 18:20:20] -rw------- 1 mf493845 unix-user      2562 Mar  5 17:29 pandaJob.out
[2026-03-05 18:20:20] -rw------- 1 mf493845 unix-user    998462 Mar  5 17:29 agis_schedconf.cvmfs.json
[2026-03-05 18:20:20] -rw------- 1 mf493845 unix-user   1521291 Mar  5 17:29 agis_ddmendpoints.agis.ALL.json
[2026-03-05 18:20:20] -rw------- 1 mf493845 unix-user       421 Mar  5 17:29 workernode_map.json
[2026-03-05 18:20:20] drwx------ 5 mf493845 unix-user       440 Mar  5 17:29 pilot3
[2026-03-05 18:20:20] -rw------- 1 mf493845 unix-user 178634206 Mar  5 18:19 HITS.48955006._004036.pool.root.1
[2026-03-05 18:20:20] -rw------- 1 mf493845 unix-user        95 Mar  5 18:19 pilot_heartbeat.json
[2026-03-05 18:20:20] -rw------- 1 mf493845 unix-user      1015 Mar  5 18:19 memory_monitor_summary.json
[2026-03-05 18:20:20] -rw------- 1 mf493845 unix-user    328904 Mar  5 18:19 log.48955006._004036.job.log.tgz.1
[2026-03-05 18:20:20] -rw------- 1 mf493845 unix-user      6315 Mar  5 18:19 heartbeat.json
[2026-03-05 18:20:20] -rw------- 1 mf493845 unix-user       819 Mar  5 18:20 pilotlog.txt
[2026-03-05 18:20:20] -rw------- 1 mf493845 unix-user    464629 Mar  5 18:20 log.48955006._004036.job.log.1
[2026-03-05 18:20:20] -rw------- 1 mf493845 unix-user       357 Mar  5 18:20 output.list
[2026-03-05 18:20:20] -rw------- 1 mf493845 unix-user       620 Mar  5 18:20 runtime_log
[2026-03-05 18:20:20] -rw------- 1 mf493845 unix-user    808960 Mar  5 18:20 result.tar.gz
[2026-03-05 18:20:20] -rw------- 1 mf493845 unix-user       642 Mar  5 18:20 0UULDmHwII9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmiFNLDmwtoR0m.diag
[2026-03-05 18:20:20] -rw------- 1 mf493845 unix-user      9219 Mar  5 18:20 runtime_log.err
[2026-03-05 18:20:20] -rw------- 1 mf493845 unix-user     21724 Mar  5 18:20 stderr.txt
[2026-03-05 18:20:20] HITS file was successfully produced:
[2026-03-05 18:20:20] -rw------- 1 mf493845 unix-user 178634206 Mar  5 18:19 shared/HITS.pool.root.1
[2026-03-05 18:20:20]  *** Contents of shared directory: ***
[2026-03-05 18:20:20] total 612224
[2026-03-05 18:20:20] -rw-r--r-- 2 mf493845 unix-user     15845 Mar  5 17:29 start_atlas.sh
[2026-03-05 18:20:20] -rw-r--r-- 2 mf493845 unix-user    597953 Mar  5 17:29 input.tar.gz
[2026-03-05 18:20:20] -rw-r--r-- 2 mf493845 unix-user 446856810 Mar  5 17:29 ATLAS.root_0
[2026-03-05 18:20:20] -rw------- 1 mf493845 unix-user 178634206 Mar  5 18:19 HITS.pool.root.1
[2026-03-05 18:20:20] -rw------- 1 mf493845 unix-user    808960 Mar  5 18:20 result.tar.gz
18:20:21 (31763): run_atlas exited; CPU time 21520.719133
18:20:21 (31763): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN