Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:05:01 (26613): wrapper (7.7.26015): starting
12:05:01 (26613): wrapper: running run_atlas (--nthreads 12)
[2026-03-05 12:05:01] Arguments: --nthreads 12
[2026-03-05 12:05:01] Threads: 12
[2026-03-05 12:05:01] Checking for CVMFS
[2026-03-05 12:05:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-05 12:05:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-05 12:05:02] Running cvmfs_config stat atlas.cern.ch
[2026-03-05 12:05:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-05 12:05:02] 2.11.2.0 2979 430532 98044 156926 2 50 16092908 20275201 1 130560 1 183211885 99.957 24133514 17503 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-05 12:05:02] CVMFS is ok
[2026-03-05 12:05:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-05 12:05:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-05 12:05:02] Further information can be found at the LHC@home message board.
[2026-03-05 12:05:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 12:05:02] Checking for apptainer binary...
[2026-03-05 12:05:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-05 12:05:02] Running /usr/bin/apptainer --version
[2026-03-05 12:05:02] apptainer version 1.3.2-1.el7
[2026-03-05 12:05:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 12:05:04] c-205-21.aglt2.org
[2026-03-05 12:05:04] apptainer works
[2026-03-05 12:05:04] Set ATHENA_PROC_NUMBER=12
[2026-03-05 12:05:04] Set ATHENA_CORE_NUMBER=12
[2026-03-05 12:05:04] Starting ATLAS job with PandaID=7038630879
[2026-03-05 12:05:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 13:13:54]  *** The last 200 lines of the pilot log: ***
[2026-03-05 13:13:54]  is_tar=False
[2026-03-05 13:13:54]  lfn=log.48955010._005907.job.log.tgz.1
[2026-03-05 13:13:54]  mtime=0
[2026-03-05 13:13:54]  protocol_id=None
[2026-03-05 13:13:54]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-05 13:13:54]  replicas=None
[2026-03-05 13:13:54]  scope=mc23_13p6TeV
[2026-03-05 13:13:54]  status=None
[2026-03-05 13:13:54]  status_code=0
[2026-03-05 13:13:54]  storage_token=
[2026-03-05 13:13:54]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-7038630879/log.48955010._005907.job.log.tgz.1
[2026-03-05 13:13:54]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/83/c4/log.48955010._005907.job.log.tgz.1
[2026-03-05 13:13:54]  workdir=None
[2026-03-05 13:13:54] ]
[2026-03-05 13:13:54] 2026-03-05 18:13:17,506 | INFO     | transferring file log.48955010._005907.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-7038630879/log.48955010._005907.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-03-05 13:13:54] 2026-03-05 18:13:17,506 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-7038630879/log.48955010._005907.job.log.tgz.1 /tmp/boinchome/slots/0/log.48955010._005907.job
[2026-03-05 13:13:54] 2026-03-05 18:13:17,528 | INFO     | adding to output.list: log.48955010._005907.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/83/c4/log.48955010._005907.job.log.tg
[2026-03-05 13:13:54] 2026-03-05 18:13:17,529 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-05 13:13:54] 2026-03-05 18:13:17,529 | INFO     | summary of transferred files:
[2026-03-05 13:13:54] 2026-03-05 18:13:17,529 | INFO     |  -- lfn=log.48955010._005907.job.log.tgz.1, status_code=0, status=transferred
[2026-03-05 13:13:54] 2026-03-05 18:13:17,529 | INFO     | stage-out finished correctly
[2026-03-05 13:13:54] 2026-03-05 18:13:18,900 | INFO     | monitor loop #311: job 0:7038630879 is in state 'finished'
[2026-03-05 13:13:54] 2026-03-05 18:13:18,900 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-05 13:13:54] 2026-03-05 18:13:18,961 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-05 13:13:54] 2026-03-05 18:13:18,988 | INFO     | time since job start (4074s) is within the limit (349056.0s)
[2026-03-05 13:13:54] 2026-03-05 18:13:21,004 | INFO     | time since job start (4077s) is within the limit (349056.0s)
[2026-03-05 13:13:54] 2026-03-05 18:13:21,403 | INFO     | monitor loop #312: job 0:7038630879 is in state 'finished'
[2026-03-05 13:13:54] 2026-03-05 18:13:21,404 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-05 13:13:54] 2026-03-05 18:13:21,957 | INFO     | job 7038630879 has state=finished
[2026-03-05 13:13:54] 2026-03-05 18:13:21,957 | INFO     | preparing for final server update for job 7038630879 in state='finished'
[2026-03-05 13:13:54] 2026-03-05 18:13:21,957 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7038630879/jobReport.json
[2026-03-05 13:13:54] 2026-03-05 18:13:21,960 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-03-05 13:13:54] 2026-03-05 18:13:21,960 | INFO     | this job has now completed (state=finished)
[2026-03-05 13:13:54] 2026-03-05 18:13:21,960 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-05 13:13:54] 2026-03-05 18:13:21,961 | INFO     | log transfer has been attempted: DONE
[2026-03-05 13:13:54] 2026-03-05 18:13:21,961 | INFO     | job 7038630879 has finished - writing final server update
[2026-03-05 13:13:54] 2026-03-05 18:13:21,961 | INFO     | total number of processed events: 400 (read)
[2026-03-05 13:13:54] 2026-03-05 18:13:21,964 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7038630879/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 13:13:54] 2026-03-05 18:13:21,964 | INFO     | extracted standard info from prmon json
[2026-03-05 13:13:54] 2026-03-05 18:13:21,964 | INFO     | extracted standard memory fields from prmon json
[2026-03-05 13:13:54] 2026-03-05 18:13:21,965 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-05 13:13:54] 2026-03-05 18:13:21,965 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-05 13:13:54] 2026-03-05 18:13:21,965 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-05 13:13:54] 2026-03-05 18:13:21,967 | INFO     | fitting pss+swap vs Time
[2026-03-05 13:13:54] 2026-03-05 18:13:21,967 | INFO     | sum of square deviations: 66959395.0
[2026-03-05 13:13:54] 2026-03-05 18:13:21,968 | INFO     | sum of deviations: -102999597.99999993
[2026-03-05 13:13:54] 2026-03-05 18:13:21,968 | INFO     | mean x: 1772732452.5
[2026-03-05 13:13:54] 2026-03-05 18:13:21,968 | INFO     | mean y: 2678330.4
[2026-03-05 13:13:54] 2026-03-05 18:13:21,968 | INFO     | intersect: 2729565721.9162164
[2026-03-05 13:13:54] 2026-03-05 18:13:21,968 | INFO     | chi2: 0.0033343117453933932
[2026-03-05 13:13:54] 2026-03-05 18:13:21,969 | INFO     | current memory leak: -1.54 B/s (using 60 data points, chi2=0.00)
[2026-03-05 13:13:54] 2026-03-05 18:13:21,969 | INFO     | could have reported an average CPU frequency of 1751 MHz (6 samples)
[2026-03-05 13:13:54] 2026-03-05 18:13:21,969 | INFO     | ..............................
[2026-03-05 13:13:54] 2026-03-05 18:13:21,969 | INFO     | . Timing measurements:
[2026-03-05 13:13:54] 2026-03-05 18:13:21,969 | INFO     | . get job = 0 s
[2026-03-05 13:13:54] 2026-03-05 18:13:21,969 | INFO     | . initial setup = 7 s
[2026-03-05 13:13:54] 2026-03-05 18:13:21,970 | INFO     | . payload setup = 7 s
[2026-03-05 13:13:54] 2026-03-05 18:13:21,970 | INFO     | . stage-in = 0 s
[2026-03-05 13:13:54] 2026-03-05 18:13:21,970 | INFO     | . payload execution = 4050 s
[2026-03-05 13:13:54] 2026-03-05 18:13:21,970 | INFO     | . stage-out = 0 s
[2026-03-05 13:13:54] 2026-03-05 18:13:21,970 | INFO     | . log creation = 0 s
[2026-03-05 13:13:54] 2026-03-05 18:13:21,970 | INFO     | ..............................
[2026-03-05 13:13:54] 2026-03-05 18:13:22,048 | INFO     | 
[2026-03-05 13:13:54] 2026-03-05 18:13:22,048 | INFO     | job summary report
[2026-03-05 13:13:54] 2026-03-05 18:13:22,048 | INFO     | --------------------------------------------------
[2026-03-05 13:13:54] 2026-03-05 18:13:22,048 | INFO     | PanDA job id: 7038630879
[2026-03-05 13:13:54] 2026-03-05 18:13:22,048 | INFO     | task id: 48955010
[2026-03-05 13:13:54] 2026-03-05 18:13:22,049 | INFO     | errors: (none)
[2026-03-05 13:13:54] 2026-03-05 18:13:22,049 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-05 13:13:54] 2026-03-05 18:13:22,049 | INFO     | pilot state: finished 
[2026-03-05 13:13:54] 2026-03-05 18:13:22,049 | INFO     | transexitcode: 0
[2026-03-05 13:13:54] 2026-03-05 18:13:22,049 | INFO     | exeerrorcode: 0
[2026-03-05 13:13:54] 2026-03-05 18:13:22,049 | INFO     | exeerrordiag: 
[2026-03-05 13:13:54] 2026-03-05 18:13:22,049 | INFO     | exitcode: 0
[2026-03-05 13:13:54] 2026-03-05 18:13:22,049 | INFO     | exitmsg: OK
[2026-03-05 13:13:54] 2026-03-05 18:13:22,049 | INFO     | cpuconsumptiontime: 44347 s
[2026-03-05 13:13:54] 2026-03-05 18:13:22,049 | INFO     | nevents: 400
[2026-03-05 13:13:54] 2026-03-05 18:13:22,050 | INFO     | neventsw: 0
[2026-03-05 13:13:54] 2026-03-05 18:13:22,050 | INFO     | pid: 3929
[2026-03-05 13:13:54] 2026-03-05 18:13:22,050 | INFO     | pgrp: 3929
[2026-03-05 13:13:54] 2026-03-05 18:13:22,050 | INFO     | corecount: 12
[2026-03-05 13:13:54] 2026-03-05 18:13:22,050 | INFO     | event service: False
[2026-03-05 13:13:54] 2026-03-05 18:13:22,050 | INFO     | sizes: {0: 2295748, 11: 2295748, 4061: 2321602, 4062: 2330600, 4063: 2330656, 4066: 2330850}
[2026-03-05 13:13:54] 2026-03-05 18:13:22,050 | INFO     | --------------------------------------------------
[2026-03-05 13:13:54] 2026-03-05 18:13:22,050 | INFO     | 
[2026-03-05 13:13:54] 2026-03-05 18:13:22,050 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-05 13:13:54] 2026-03-05 18:13:22,074 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-05 13:13:54] 2026-03-05 18:13:22,074 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-05 13:13:54] 2026-03-05 18:13:22,074 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-05 13:13:54] 2026-03-05 18:13:22,075 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-05 13:13:54] 2026-03-05 18:13:22,075 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-05 13:13:54] 2026-03-05 18:13:22,075 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-05 13:13:54] 2026-03-05 18:13:22,075 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-05 13:13:54] 2026-03-05 18:13:22,075 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-05 13:13:54] 2026-03-05 18:13:22,075 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-05 13:13:54] 2026-03-05 18:13:22,076 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-05 13:13:54] 2026-03-05 18:13:22,076 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-05 13:13:54] 2026-03-05 18:13:22,076 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-05 13:13:54] 2026-03-05 18:13:22,076 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-05 13:13:54] 2026-03-05 18:13:22,076 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-05 13:13:54] 2026-03-05 18:13:22,076 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-05 13:13:54] 2026-03-05 18:13:22,077 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-05 13:13:54] 2026-03-05 18:13:22,077 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-05 13:13:54] 2026-03-05 18:13:22,077 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-05 13:13:54] 2026-03-05 18:13:22,077 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-05 13:13:54] 2026-03-05 18:13:22,077 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-05 13:13:54] 2026-03-05 18:13:22,077 | INFO     | job 7038630879 has completed (purged errors)
[2026-03-05 13:13:54] 2026-03-05 18:13:22,078 | INFO     | overall cleanup function is called
[2026-03-05 13:13:54] 2026-03-05 18:13:23,086 | INFO     | --- collectZombieJob: --- 10, [3929]
[2026-03-05 13:13:54] 2026-03-05 18:13:23,086 | INFO     | zombie collector waiting for pid 3929
[2026-03-05 13:13:54] 2026-03-05 18:13:23,086 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 13:13:54] 2026-03-05 18:13:23,086 | INFO     | collected zombie processes
[2026-03-05 13:13:54] 2026-03-05 18:13:23,087 | INFO     | will attempt to kill all subprocesses of pid=3929
[2026-03-05 13:13:54] 2026-03-05 18:13:23,174 | INFO     | process IDs to be killed: [3929] (in reverse order)
[2026-03-05 13:13:54] 2026-03-05 18:13:23,228 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 13:13:54] 2026-03-05 18:13:23,229 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 13:13:54] 2026-03-05 18:13:23,232 | INFO     | did not find any defunct processes belonging to 3929
[2026-03-05 13:13:54] 2026-03-05 18:13:23,234 | INFO     | did not find any defunct processes belonging to 3929
[2026-03-05 13:13:54] 2026-03-05 18:13:23,235 | INFO     | ready for new job
[2026-03-05 13:13:54] 2026-03-05 18:13:23,235 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 13:13:54] 2026-03-05 18:13:23,236 | INFO     | **************************************
[2026-03-05 13:13:54] 2026-03-05 18:13:23,236 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 13:13:54] 2026-03-05 18:13:23,236 | INFO     | **************************************
[2026-03-05 13:13:54] 2026-03-05 18:13:23,237 | INFO     | 
[2026-03-05 13:13:54] 2026-03-05 18:13:23,237 | INFO     | architecture information:
[2026-03-05 13:13:54] 2026-03-05 18:13:23,238 | INFO     | executing command: cat /etc/os-release
[2026-03-05 13:13:54] 2026-03-05 18:13:23,253 | INFO     | cat /etc/os-release:
[2026-03-05 13:13:54] NAME="CentOS Linux"
[2026-03-05 13:13:54] VERSION="7 (Core)"
[2026-03-05 13:13:54] ID="centos"
[2026-03-05 13:13:54] ID_LIKE="rhel fedora"
[2026-03-05 13:13:54] VERSION_ID="7"
[2026-03-05 13:13:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 13:13:54] ANSI_COLOR="0;31"
[2026-03-05 13:13:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 13:13:54] HOME_URL="https://www.centos.org/"
[2026-03-05 13:13:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 13:13:54] 
[2026-03-05 13:13:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 13:13:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 13:13:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 13:13:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 13:13:54] 
[2026-03-05 13:13:54] 2026-03-05 18:13:23,253 | INFO     | **************************************
[2026-03-05 13:13:54] 2026-03-05 18:13:23,756 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-05 13:13:54] 2026-03-05 18:13:23,773 | INFO     | sufficient remaining disk space (28890365952 B)
[2026-03-05 13:13:54] 2026-03-05 18:13:23,773 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 13:13:54] 2026-03-05 18:13:23,773 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 13:13:54] 2026-03-05 18:13:23,774 | INFO     | update_server=False
[2026-03-05 13:13:54] 2026-03-05 18:13:23,774 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 13:13:54] 2026-03-05 18:13:23,774 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 13:13:54] 2026-03-05 18:13:23,774 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 13:13:54] 2026-03-05 18:13:23,799 | INFO     | all job control threads have been joined
[2026-03-05 13:13:54] 2026-03-05 18:13:23,922 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-05 13:13:54] 2026-03-05 18:13:23,922 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-05 13:13:54] 2026-03-05 18:13:23,922 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 13:13:54] 2026-03-05 18:13:23,922 | INFO     | will abort loop
[2026-03-05 13:13:54] 2026-03-05 18:13:24,050 | INFO     | all data control threads have been joined
[2026-03-05 13:13:54] 2026-03-05 18:13:24,779 | INFO     | [job] queue monitor thread has finished
[2026-03-05 13:13:54] 2026-03-05 18:13:24,779 | INFO     | [job] retrieve thread has finished
[2026-03-05 13:13:54] 2026-03-05 18:13:24,804 | INFO     | [job] control thread has finished
[2026-03-05 13:13:54] 2026-03-05 18:13:24,857 | INFO     | [payload] failed_post thread has finished
[2026-03-05 13:13:54] 2026-03-05 18:13:24,869 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 13:13:54] 2026-03-05 18:13:24,923 | INFO     | [job] job monitor thread has finished
[2026-03-05 13:13:54] 2026-03-05 18:13:25,035 | INFO     | all payload control threads have been joined
[2026-03-05 13:13:54] 2026-03-05 18:13:25,047 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 13:13:54] 2026-03-05 18:13:25,056 | INFO     | [data] control thread has finished
[2026-03-05 13:13:54] 2026-03-05 18:13:25,065 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 13:13:54] 2026-03-05 18:13:25,203 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 13:13:54] 2026-03-05 18:13:25,458 | INFO     | [data] copytool_in thread has finished
[2026-03-05 13:13:54] 2026-03-05 18:13:25,777 | INFO     | [payload] validate_post thread has finished
[2026-03-05 13:13:54] 2026-03-05 18:13:25,780 | INFO     | [data] copytool_out thread has finished
[2026-03-05 13:13:54] 2026-03-05 18:13:26,007 | INFO     | [job] validate thread has finished
[2026-03-05 13:13:54] 2026-03-05 18:13:26,036 | INFO     | [payload] control thread has finished
[2026-03-05 13:13:54] 2026-03-05 18:13:29,050 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 13:13:54] 2026-03-05 18:13:30,306 | INFO     | [monitor] cgroup control has ended
[2026-03-05 13:13:54] 2026-03-05 18:13:34,295 | INFO     | job.realtimelogging is not enabled
[2026-03-05 13:13:54] 2026-03-05 18:13:35,312 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 13:13:54] 2026-03-05 18:13:36,536 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140105769273152)>', '<ExcThread(monitor, started 140104945346304)>']
[2026-03-05 13:13:54] 2026-03-05 18:13:41,561 | INFO     | all workflow threads have been joined
[2026-03-05 13:13:54] 2026-03-05 18:13:41,562 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 13:13:54] 2026-03-05 18:13:41,562 | INFO     | traces error code: 0
[2026-03-05 13:13:54] 2026-03-05 18:13:41,562 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 13:13:54] 2026-03-05 18:13:54,191 | INFO     | PID=31825 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-05 13:13:54] 2026-03-05 18:13:54,191 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 13:13:54] 2026-03-05 18:13:54,191 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 13:13:54] 2026-03-05 18:13:54,191 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 13:13:54] 2026-03-05 18:13:54,192 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 13:13:54] 2026-03-05 18:13:54,192 | CRITICAL | thread 'MainThread' is not alive
[2026-03-05 13:13:54] 2026-03-05 18:13:54,192 | INFO     | [monitor] control thread has ended
[2026-03-05 13:13:54] 2026-03-05 18:13:54,276 [wrapper] ==== pilot stdout END ====
[2026-03-05 13:13:54] 2026-03-05 18:13:54,280 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 13:13:54] 2026-03-05 18:13:54,284 [wrapper] pilotpid: 31825
[2026-03-05 13:13:54] 2026-03-05 18:13:54,288 [wrapper] Pilot exit status: 0
[2026-03-05 13:13:54] 2026-03-05 18:13:54,304 [wrapper] pandaids: 7038630879
[2026-03-05 13:13:54] 2026-03-05 18:13:54,346 [wrapper] cleanup supervisor_pilot 22533 31826
[2026-03-05 13:13:54] 2026-03-05 18:13:54,350 [wrapper] Test setup, not cleaning
[2026-03-05 13:13:54] 2026-03-05 18:13:54,354 [wrapper] apfmon messages muted
[2026-03-05 13:13:54] 2026-03-05 18:13:54,358 [wrapper] ==== wrapper stdout END ====
[2026-03-05 13:13:54] 2026-03-05 18:13:54,362 [wrapper] ==== wrapper stderr END ====
[2026-03-05 13:13:54]  *** Error codes and diagnostics ***
[2026-03-05 13:13:54]     "exeErrorCode": 0,
[2026-03-05 13:13:54]     "exeErrorDiag": "",
[2026-03-05 13:13:54]     "pilotErrorCode": 0,
[2026-03-05 13:13:54]     "pilotErrorDiag": "",
[2026-03-05 13:13:54]  *** Listing of results directory ***
[2026-03-05 13:13:54] total 626352
[2026-03-05 13:13:54] -rw-r--r-- 1 boincer umatlas    584627 Mar  5 07:30 pilot3.tar.gz
[2026-03-05 13:13:54] -rwx------ 1 boincer umatlas     36322 Mar  5 07:34 runpilot2-wrapper.sh
[2026-03-05 13:13:54] -rw-r--r-- 1 boincer umatlas      5111 Mar  5 07:34 queuedata.json
[2026-03-05 13:13:54] -rw-r--r-- 1 boincer umatlas       100 Mar  5 12:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 13:13:54] -rwxr-xr-x 1 boincer umatlas      7986 Mar  5 12:05 run_atlas
[2026-03-05 13:13:54] -rw-r--r-- 1 boincer umatlas       105 Mar  5 12:05 job.xml
[2026-03-05 13:13:54] -rw-r--r-- 2 boincer umatlas 442725077 Mar  5 12:05 EVNT.46701403._001119.pool.root.1
[2026-03-05 13:13:54] -rw-r--r-- 2 boincer umatlas     15845 Mar  5 12:05 start_atlas.sh
[2026-03-05 13:13:54] drwxrwx--x 2 boincer umatlas      4096 Mar  5 12:05 shared
[2026-03-05 13:13:54] -rw-r--r-- 2 boincer umatlas    597943 Mar  5 12:05 input.tar.gz
[2026-03-05 13:13:54] -rw-r--r-- 1 boincer umatlas         0 Mar  5 12:05 boinc_lockfile
[2026-03-05 13:13:54] -rw-r--r-- 1 boincer umatlas      2560 Mar  5 12:05 pandaJob.out
[2026-03-05 13:13:54] -rw------- 1 boincer umatlas        57 Mar  5 12:05 setup.sh.local
[2026-03-05 13:13:54] -rw------- 1 boincer umatlas    998462 Mar  5 12:05 agis_schedconf.cvmfs.json
[2026-03-05 13:13:54] -rw------- 1 boincer umatlas   1521291 Mar  5 12:05 agis_ddmendpoints.agis.ALL.json
[2026-03-05 13:13:54] -rw------- 1 boincer umatlas       434 Mar  5 12:05 workernode_map.json
[2026-03-05 13:13:54] drwx------ 5 boincer umatlas      4096 Mar  5 12:05 pilot3
[2026-03-05 13:13:54] -rw-r--r-- 1 boincer umatlas      5953 Mar  5 13:11 init_data.xml
[2026-03-05 13:13:54] -rw------- 1 boincer umatlas 192789975 Mar  5 13:12 HITS.48955010._005907.pool.root.1
[2026-03-05 13:13:54] -rw-r--r-- 1 boincer umatlas       530 Mar  5 13:12 boinc_task_state.xml
[2026-03-05 13:13:54] -rw------- 1 boincer umatlas      1046 Mar  5 13:13 memory_monitor_summary.json
[2026-03-05 13:13:54] -rw------- 1 boincer umatlas        95 Mar  5 13:13 pilot_heartbeat.json
[2026-03-05 13:13:54] -rw------- 1 boincer umatlas    371217 Mar  5 13:13 log.48955010._005907.job.log.tgz.1
[2026-03-05 13:13:54] -rw------- 1 boincer umatlas      6405 Mar  5 13:13 heartbeat.json
[2026-03-05 13:13:54] -rw-r--r-- 1 boincer umatlas        27 Mar  5 13:13 wrapper_checkpoint.txt
[2026-03-05 13:13:54] -rw-r--r-- 1 boincer umatlas      8192 Mar  5 13:13 boinc_mmap_file
[2026-03-05 13:13:54] -rw------- 1 boincer umatlas       815 Mar  5 13:13 pilotlog.txt
[2026-03-05 13:13:54] -rw------- 1 boincer umatlas    598628 Mar  5 13:13 log.48955010._005907.job.log.1
[2026-03-05 13:13:54] -rw------- 1 boincer umatlas       357 Mar  5 13:13 output.list
[2026-03-05 13:13:54] -rw-r--r-- 1 boincer umatlas       620 Mar  5 13:13 runtime_log
[2026-03-05 13:13:54] -rw------- 1 boincer umatlas    983040 Mar  5 13:13 result.tar.gz
[2026-03-05 13:13:54] -rw-r--r-- 1 boincer umatlas      9343 Mar  5 13:13 runtime_log.err
[2026-03-05 13:13:54] -rw------- 1 boincer umatlas       659 Mar  5 13:13 fZZNDm84MI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmUtLLDm4gavEm.diag
[2026-03-05 13:13:54] -rw-r--r-- 1 boincer umatlas     21494 Mar  5 13:13 stderr.txt
[2026-03-05 13:13:54] HITS file was successfully produced:
[2026-03-05 13:13:54] -rw------- 1 boincer umatlas 192789975 Mar  5 13:12 shared/HITS.pool.root.1
[2026-03-05 13:13:54]  *** Contents of shared directory: ***
[2026-03-05 13:13:54] total 622188
[2026-03-05 13:13:54] -rw-r--r-- 2 boincer umatlas 442725077 Mar  5 12:05 ATLAS.root_0
[2026-03-05 13:13:54] -rw-r--r-- 2 boincer umatlas     15845 Mar  5 12:05 start_atlas.sh
[2026-03-05 13:13:54] -rw-r--r-- 2 boincer umatlas    597943 Mar  5 12:05 input.tar.gz
[2026-03-05 13:13:54] -rw------- 1 boincer umatlas 192789975 Mar  5 13:12 HITS.pool.root.1
[2026-03-05 13:13:54] -rw------- 1 boincer umatlas    983040 Mar  5 13:13 result.tar.gz
13:13:55 (26613): run_atlas exited; CPU time 44330.346472
13:13:55 (26613): called boinc_finish(0)

</stderr_txt>
]]>

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