Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:21:50 (1438777): wrapper (7.7.26015): starting
22:21:50 (1438777): wrapper: running run_atlas (--nthreads 3)
[2026-03-05 22:21:50] Arguments: --nthreads 3
[2026-03-05 22:21:50] Threads: 3
[2026-03-05 22:21:50] Checking for CVMFS
[2026-03-05 22:21:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-05 22:21:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-05 22:21:51] Running cvmfs_config stat atlas.cern.ch
[2026-03-05 22:21:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-05 22:21:51] 2.9.2.0 2903 10348 83464 156933 2 49 28058995 36864001 0 130560 0 4025174 99.979 517672 4856 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-05 22:21:51] CVMFS is ok
[2026-03-05 22:21:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-05 22:21:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-05 22:21:51] Further information can be found at the LHC@home message board.
[2026-03-05 22:21:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 22:21:51] Checking for apptainer binary...
[2026-03-05 22:21:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-05 22:21:51] Running /usr/bin/apptainer --version
[2026-03-05 22:21:51] apptainer version 1.4.1-1.1
[2026-03-05 22:21:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 22:21:51] belleA253
[2026-03-05 22:21:51] apptainer works
[2026-03-05 22:21:51] Set ATHENA_PROC_NUMBER=3
[2026-03-05 22:21:51] Set ATHENA_CORE_NUMBER=3
[2026-03-05 22:21:51] Starting ATLAS job with PandaID=7038573335
[2026-03-05 22:21:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 23:43:12]  *** The last 200 lines of the pilot log: ***
[2026-03-05 23:43:12] 2026-03-05 22:42:38,981 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-05 23:43:12] 2026-03-05 22:42:38,981 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-05 23:43:12] 2026-03-05 22:42:38,981 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-05 23:43:12] 2026-03-05 22:42:38,981 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-05 23:43:12] 2026-03-05 22:42:38,981 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-05 23:43:12] 2026-03-05 22:42:38,981 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-05 23:43:12] 2026-03-05 22:42:38,981 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-05 23:43:12] 2026-03-05 22:42:38,981 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-05 23:43:12] 2026-03-05 22:42:38,981 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-05 23:43:12] 2026-03-05 22:42:38,982 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-05 23:43:12] 2026-03-05 22:42:38,982 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-05 23:43:12] 2026-03-05 22:42:38,982 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-05 23:43:12] 2026-03-05 22:42:38,982 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-05 23:43:12] 2026-03-05 22:42:38,982 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-05 23:43:12] 2026-03-05 22:42:38,982 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-05 23:43:12] 2026-03-05 22:42:38,982 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-05 23:43:12] 2026-03-05 22:42:38,982 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-05 23:43:12] 2026-03-05 22:42:38,982 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-05 23:43:12] 2026-03-05 22:42:38,982 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-05 23:43:12] 2026-03-05 22:42:38,982 | INFO     | job 7038573335 has completed (purged errors)
[2026-03-05 23:43:12] 2026-03-05 22:42:38,982 | INFO     | overall cleanup function is called
[2026-03-05 23:43:12] 2026-03-05 22:42:39,985 | INFO     | --- collectZombieJob: --- 10, [1447238]
[2026-03-05 23:43:12] 2026-03-05 22:42:39,985 | INFO     | zombie collector waiting for pid 1447238
[2026-03-05 23:43:12] 2026-03-05 22:42:39,985 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 23:43:12] 2026-03-05 22:42:39,985 | INFO     | collected zombie processes
[2026-03-05 23:43:12] 2026-03-05 22:42:39,985 | INFO     | will attempt to kill all subprocesses of pid=1447238
[2026-03-05 23:43:12] 2026-03-05 22:42:40,026 | INFO     | process IDs to be killed: [1447238] (in reverse order)
[2026-03-05 23:43:12] 2026-03-05 22:42:40,051 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 23:43:12] 2026-03-05 22:42:40,051 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 23:43:12] 2026-03-05 22:42:40,052 | INFO     | did not find any defunct processes belonging to 1447238
[2026-03-05 23:43:12] 2026-03-05 22:42:40,053 | INFO     | did not find any defunct processes belonging to 1447238
[2026-03-05 23:43:12] 2026-03-05 22:42:40,053 | INFO     | ready for new job
[2026-03-05 23:43:12] 2026-03-05 22:42:40,054 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 23:43:12] 2026-03-05 22:42:40,054 | INFO     | **************************************
[2026-03-05 23:43:12] 2026-03-05 22:42:40,054 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 23:43:12] 2026-03-05 22:42:40,054 | INFO     | **************************************
[2026-03-05 23:43:12] 2026-03-05 22:42:40,054 | INFO     | 
[2026-03-05 23:43:12] 2026-03-05 22:42:40,055 | INFO     | architecture information:
[2026-03-05 23:43:12] 2026-03-05 22:42:40,055 | INFO     | executing command: cat /etc/os-release
[2026-03-05 23:43:12] 2026-03-05 22:42:40,064 | INFO     | cat /etc/os-release:
[2026-03-05 23:43:12] NAME="CentOS Linux"
[2026-03-05 23:43:12] VERSION="7 (Core)"
[2026-03-05 23:43:12] ID="centos"
[2026-03-05 23:43:12] ID_LIKE="rhel fedora"
[2026-03-05 23:43:12] VERSION_ID="7"
[2026-03-05 23:43:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 23:43:12] ANSI_COLOR="0;31"
[2026-03-05 23:43:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 23:43:12] HOME_URL="https://www.centos.org/"
[2026-03-05 23:43:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 23:43:12] 
[2026-03-05 23:43:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 23:43:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 23:43:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 23:43:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 23:43:12] 
[2026-03-05 23:43:12] 2026-03-05 22:42:40,064 | INFO     | **************************************
[2026-03-05 23:43:12] 2026-03-05 22:42:40,568 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-05 23:43:12] 2026-03-05 22:42:40,582 | INFO     | sufficient remaining disk space (374915203072 B)
[2026-03-05 23:43:12] 2026-03-05 22:42:40,582 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 23:43:12] 2026-03-05 22:42:40,582 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 23:43:12] 2026-03-05 22:42:40,582 | INFO     | update_server=False
[2026-03-05 23:43:12] 2026-03-05 22:42:40,582 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 23:43:12] 2026-03-05 22:42:40,582 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 23:43:12] 2026-03-05 22:42:40,582 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 23:43:12] 2026-03-05 22:42:40,583 | INFO     | aborting loop
[2026-03-05 23:43:12] 2026-03-05 22:42:40,768 | INFO     | all payload control threads have been joined
[2026-03-05 23:43:12] 2026-03-05 22:42:40,959 | INFO     | all data control threads have been joined
[2026-03-05 23:43:12] 2026-03-05 22:42:41,279 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 23:43:12] 2026-03-05 22:42:41,428 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 23:43:12] 2026-03-05 22:42:41,588 | INFO     | [job] retrieve thread has finished
[2026-03-05 23:43:12] 2026-03-05 22:42:41,588 | INFO     | [job] queue monitor thread has finished
[2026-03-05 23:43:12] 2026-03-05 22:42:41,588 | INFO     | [job] job monitor thread has finished
[2026-03-05 23:43:12] 2026-03-05 22:42:41,774 | INFO     | [payload] control thread has finished
[2026-03-05 23:43:12] 2026-03-05 22:42:41,879 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 23:43:12] 2026-03-05 22:42:41,948 | INFO     | all job control threads have been joined
[2026-03-05 23:43:12] 2026-03-05 22:42:41,965 | INFO     | [data] control thread has finished
[2026-03-05 23:43:12] 2026-03-05 22:42:42,028 | INFO     | [payload] failed_post thread has finished
[2026-03-05 23:43:12] 2026-03-05 22:42:42,594 | INFO     | [payload] validate_post thread has finished
[2026-03-05 23:43:12] 2026-03-05 22:42:42,731 | INFO     | [job] validate thread has finished
[2026-03-05 23:43:12] 2026-03-05 22:42:42,791 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 23:43:12] 2026-03-05 22:42:42,838 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 23:43:12] 2026-03-05 22:42:42,947 | INFO     | [data] copytool_in thread has finished
[2026-03-05 23:43:12] 2026-03-05 22:42:42,952 | INFO     | [job] control thread has finished
[2026-03-05 23:43:12] 2026-03-05 22:42:43,285 | INFO     | [data] copytool_out thread has finished
[2026-03-05 23:43:12] 2026-03-05 22:42:45,435 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 23:43:12] 2026-03-05 22:42:51,226 | INFO     | job.realtimelogging is not enabled
[2026-03-05 23:43:12] 2026-03-05 22:42:52,232 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 23:43:12] 2026-03-05 22:43:06,957 | INFO     | [monitor] cgroup control has ended
[2026-03-05 23:43:12] 2026-03-05 22:43:06,974 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139879021639488)>', '<ExcThread(monitor, started 139877999953664)>']
[2026-03-05 23:43:12] 2026-03-05 22:43:10,992 | INFO     | PID=1442812 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-05 23:43:12] 2026-03-05 22:43:10,992 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 23:43:12] 2026-03-05 22:43:10,992 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 23:43:12] 2026-03-05 22:43:10,992 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 23:43:12] 2026-03-05 22:43:10,992 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 23:43:12] 2026-03-05 22:43:10,992 | INFO     | [monitor] control thread has ended
[2026-03-05 23:43:12] 2026-03-05 22:43:11,999 | INFO     | all workflow threads have been joined
[2026-03-05 23:43:12] 2026-03-05 22:43:11,999 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 23:43:12] 2026-03-05 22:43:11,999 | INFO     | traces error code: 0
[2026-03-05 23:43:12] 2026-03-05 22:43:12,000 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 23:43:12] 2026-03-05 22:43:12,050 [wrapper] ==== pilot stdout END ====
[2026-03-05 23:43:12] 2026-03-05 22:43:12,053 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 23:43:12] 2026-03-05 22:43:12,055 [wrapper] pilotpid: 1442812
[2026-03-05 23:43:12] 2026-03-05 22:43:12,058 [wrapper] Pilot exit status: 0
[2026-03-05 23:43:12] 2026-03-05 22:43:12,066 [wrapper] pandaids: 7038573335
[2026-03-05 23:43:12] 2026-03-05 22:43:12,082 [wrapper] cleanup supervisor_pilot 1452342 1442813
[2026-03-05 23:43:12] 2026-03-05 22:43:12,085 [wrapper] Test setup, not cleaning
[2026-03-05 23:43:12] 2026-03-05 22:43:12,087 [wrapper] apfmon messages muted
[2026-03-05 23:43:12] 2026-03-05 22:43:12,090 [wrapper] ==== wrapper stdout END ====
[2026-03-05 23:43:12] 2026-03-05 22:43:12,092 [wrapper] ==== wrapper stderr END ====
[2026-03-05 23:43:12]  *** Error codes and diagnostics ***
[2026-03-05 23:43:12]     "exeErrorCode": 0,
[2026-03-05 23:43:12]     "exeErrorDiag": "",
[2026-03-05 23:43:12]     "pilotErrorCode": 0,
[2026-03-05 23:43:12]     "pilotErrorDiag": "",
[2026-03-05 23:43:12]  *** Listing of results directory ***
[2026-03-05 23:43:12] total 617380
[2026-03-05 23:43:12] -rw-r--r-- 1 boinc boinc      5111 Mar  5 07:14 queuedata.json
[2026-03-05 23:43:12] -rw-r--r-- 1 boinc boinc    584627 Mar  5 07:14 pilot3.tar.gz
[2026-03-05 23:43:12] -rwx------ 1 boinc boinc     36322 Mar  5 07:14 runpilot2-wrapper.sh
[2026-03-05 23:43:12] -rw-r--r-- 1 boinc boinc       100 Mar  5 22:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 23:43:12] -rwxr-xr-x 1 boinc boinc      7986 Mar  5 22:21 run_atlas
[2026-03-05 23:43:12] -rw-r--r-- 1 boinc boinc       105 Mar  5 22:21 job.xml
[2026-03-05 23:43:12] -rw-r--r-- 2 boinc boinc 436212783 Mar  5 22:21 EVNT.46701403._000078.pool.root.1
[2026-03-05 23:43:12] drwxrwx--x 2 boinc boinc      4096 Mar  5 22:21 shared
[2026-03-05 23:43:12] -rw-r--r-- 2 boinc boinc    597955 Mar  5 22:21 input.tar.gz
[2026-03-05 23:43:12] -rw-r--r-- 2 boinc boinc     15845 Mar  5 22:21 start_atlas.sh
[2026-03-05 23:43:12] -rw-r--r-- 1 boinc boinc         0 Mar  5 22:21 boinc_setup_complete
[2026-03-05 23:43:12] -rw-r--r-- 1 boinc boinc      6447 Mar  5 22:21 init_data.xml
[2026-03-05 23:43:12] -rw-r--r-- 1 boinc boinc         0 Mar  5 22:21 boinc_lockfile
[2026-03-05 23:43:12] -rw-r--r-- 1 boinc boinc      2562 Mar  5 22:21 pandaJob.out
[2026-03-05 23:43:12] -rw------- 1 boinc boinc    998552 Mar  5 22:21 agis_schedconf.cvmfs.json
[2026-03-05 23:43:12] -rw------- 1 boinc boinc   1521291 Mar  5 22:21 agis_ddmendpoints.agis.ALL.json
[2026-03-05 23:43:12] -rw------- 1 boinc boinc       426 Mar  5 22:22 workernode_map.json
[2026-03-05 23:43:12] drwx------ 5 boinc boinc      4096 Mar  5 22:22 pilot3
[2026-03-05 23:43:12] -rw------- 1 boinc boinc 190077873 Mar  5 23:42 HITS.48955006._003885.pool.root.1
[2026-03-05 23:43:12] -rw-r--r-- 1 boinc boinc       530 Mar  5 23:42 boinc_task_state.xml
[2026-03-05 23:43:12] -rw------- 1 boinc boinc        95 Mar  5 23:42 pilot_heartbeat.json
[2026-03-05 23:43:12] -rw------- 1 boinc boinc      1015 Mar  5 23:42 memory_monitor_summary.json
[2026-03-05 23:43:12] -rw------- 1 boinc boinc    278662 Mar  5 23:42 log.48955006._003885.job.log.tgz.1
[2026-03-05 23:43:12] -rw------- 1 boinc boinc      6307 Mar  5 23:42 heartbeat.json
[2026-03-05 23:43:12] -rw-r--r-- 1 boinc boinc      8192 Mar  5 23:42 boinc_mmap_file
[2026-03-05 23:43:12] -rw-r--r-- 1 boinc boinc        27 Mar  5 23:42 wrapper_checkpoint.txt
[2026-03-05 23:43:12] -rw------- 1 boinc boinc      4820 Mar  5 23:43 pilotlog.txt
[2026-03-05 23:43:12] -rw------- 1 boinc boinc    711032 Mar  5 23:43 log.48955006._003885.job.log.1
[2026-03-05 23:43:12] -rw------- 1 boinc boinc       357 Mar  5 23:43 output.list
[2026-03-05 23:43:12] -rw-r--r-- 1 boinc boinc       620 Mar  5 23:43 runtime_log
[2026-03-05 23:43:12] -rw------- 1 boinc boinc   1003520 Mar  5 23:43 result.tar.gz
[2026-03-05 23:43:12] -rw-r--r-- 1 boinc boinc      8911 Mar  5 23:43 runtime_log.err
[2026-03-05 23:43:12] -rw------- 1 boinc boinc       660 Mar  5 23:43 5MnMDm09GI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmZwKLDmanJcRo.diag
[2026-03-05 23:43:12] -rw-r--r-- 1 boinc boinc     12830 Mar  5 23:43 stderr.txt
[2026-03-05 23:43:12] HITS file was successfully produced:
[2026-03-05 23:43:12] -rw------- 1 boinc boinc 190077873 Mar  5 23:42 shared/HITS.pool.root.1
[2026-03-05 23:43:12]  *** Contents of shared directory: ***
[2026-03-05 23:43:12] total 613204
[2026-03-05 23:43:12] -rw-r--r-- 2 boinc boinc 436212783 Mar  5 22:21 ATLAS.root_0
[2026-03-05 23:43:12] -rw-r--r-- 2 boinc boinc    597955 Mar  5 22:21 input.tar.gz
[2026-03-05 23:43:12] -rw-r--r-- 2 boinc boinc     15845 Mar  5 22:21 start_atlas.sh
[2026-03-05 23:43:12] -rw------- 1 boinc boinc 190077873 Mar  5 23:42 HITS.pool.root.1
[2026-03-05 23:43:12] -rw------- 1 boinc boinc   1003520 Mar  5 23:43 result.tar.gz
23:43:13 (1438777): run_atlas exited; CPU time 13798.639138
23:43:13 (1438777): called boinc_finish(0)

</stderr_txt>
]]>

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