Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:38:07 (4513): wrapper (7.7.26015): starting
19:38:07 (4513): wrapper: running run_atlas (--nthreads 8)
[2026-03-05 19:38:07] Arguments: --nthreads 8
[2026-03-05 19:38:07] Threads: 8
[2026-03-05 19:38:07] Checking for CVMFS
[2026-03-05 19:38:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-05 19:38:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-05 19:38:07] Running cvmfs_config stat atlas.cern.ch
[2026-03-05 19:38:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-05 19:38:07] 2.11.2.0 7648 114967 129380 156929 0 116 21560545 25165825 94 130560 157 39850335 99.838 25397124 878 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-05 19:38:07] CVMFS is ok
[2026-03-05 19:38:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 19:38:07] Checking for apptainer binary...
[2026-03-05 19:38:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-05 19:38:07] Running /usr/bin/apptainer --version
[2026-03-05 19:38:07] apptainer version 1.3.2-1.el7
[2026-03-05 19:38:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 19:38:09] cg-vwn480.simple-grid.lan
[2026-03-05 19:38:09] apptainer works
[2026-03-05 19:38:09] Set ATHENA_PROC_NUMBER=8
[2026-03-05 19:38:09] Set ATHENA_CORE_NUMBER=8
[2026-03-05 19:38:09] Starting ATLAS job with PandaID=7037127445
[2026-03-05 19:38:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 23:54:11]  *** The last 200 lines of the pilot log: ***
[2026-03-05 23:54:11] 2026-03-05 22:53:12,901 | INFO     | total number of processed events: 400 (read)
[2026-03-05 23:54:11] 2026-03-05 22:53:12,903 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-7037127445/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 23:54:11] 2026-03-05 22:53:12,904 | INFO     | extracted standard info from prmon json
[2026-03-05 23:54:11] 2026-03-05 22:53:12,904 | INFO     | extracted standard memory fields from prmon json
[2026-03-05 23:54:11] 2026-03-05 22:53:12,904 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-05 23:54:11] 2026-03-05 22:53:12,904 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-05 23:54:11] 2026-03-05 22:53:12,904 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-05 23:54:11] 2026-03-05 22:53:12,909 | INFO     | fitting pss+swap vs Time
[2026-03-05 23:54:11] 2026-03-05 22:53:12,910 | INFO     | sum of square deviations: 4844974562.5
[2026-03-05 23:54:11] 2026-03-05 22:53:12,912 | INFO     | sum of deviations: -8158886518.000006
[2026-03-05 23:54:11] 2026-03-05 22:53:12,912 | INFO     | mean x: 1772743535.5
[2026-03-05 23:54:11] 2026-03-05 22:53:12,912 | INFO     | mean y: 2534091.64
[2026-03-05 23:54:11] 2026-03-05 22:53:12,912 | INFO     | intersect: 2987815674.6663947
[2026-03-05 23:54:11] 2026-03-05 22:53:12,913 | INFO     | chi2: 2.3834182268068105
[2026-03-05 23:54:11] 2026-03-05 22:53:12,913 | INFO     | sum of square deviations: 4560048290.0
[2026-03-05 23:54:11] 2026-03-05 22:53:12,915 | INFO     | sum of deviations: 8769793710.000002
[2026-03-05 23:54:11] 2026-03-05 22:53:12,916 | INFO     | mean x: 1772743383.0
[2026-03-05 23:54:11] 2026-03-05 22:53:12,916 | INFO     | mean y: 2543006.102040816
[2026-03-05 23:54:11] 2026-03-05 22:53:12,916 | INFO     | intersect: -3406761628.625309
[2026-03-05 23:54:11] 2026-03-05 22:53:12,916 | INFO     | chi2: 1.6110475043710852
[2026-03-05 23:54:11] 2026-03-05 22:53:12,917 | INFO     | current chi2=1.6110475043710852 (change=32.40600888877612 %)
[2026-03-05 23:54:11] 2026-03-05 22:53:12,917 | INFO     | sum of square deviations: 4286517580.0
[2026-03-05 23:54:11] 2026-03-05 22:53:12,919 | INFO     | sum of deviations: 8558278894.000006
[2026-03-05 23:54:11] 2026-03-05 22:53:12,919 | INFO     | mean x: 1772743230.5
[2026-03-05 23:54:11] 2026-03-05 22:53:12,919 | INFO     | mean y: 2542888.1666666665
[2026-03-05 23:54:11] 2026-03-05 22:53:12,919 | INFO     | intersect: -3536840933.5298114
[2026-03-05 23:54:11] 2026-03-05 22:53:12,920 | INFO     | chi2: 1.6114275524599735
[2026-03-05 23:54:11] 2026-03-05 22:53:12,920 | INFO     | current chi2=1.6114275524599735 (change=-0.02359012306323106 %)
[2026-03-05 23:54:11] 2026-03-05 22:53:12,920 | INFO     | right removable region: 239
[2026-03-05 23:54:11] 2026-03-05 22:53:12,920 | INFO     | sum of square deviations: 4560048290.0
[2026-03-05 23:54:11] 2026-03-05 22:53:12,922 | INFO     | sum of deviations: -46454655042.0
[2026-03-05 23:54:11] 2026-03-05 22:53:12,923 | INFO     | mean x: 1772743688.0
[2026-03-05 23:54:11] 2026-03-05 22:53:12,923 | INFO     | mean y: 2554398.8775510206
[2026-03-05 23:54:11] 2026-03-05 22:53:12,923 | INFO     | intersect: 18062055366.119038
[2026-03-05 23:54:11] 2026-03-05 22:53:12,923 | INFO     | chi2: 0.9521836026480535
[2026-03-05 23:54:11] 2026-03-05 22:53:12,924 | INFO     | current chi2=0.9521836026480535 (change=60.04966346490757 %)
[2026-03-05 23:54:11] 2026-03-05 22:53:12,924 | INFO     | sum of square deviations: 4286517580.0
[2026-03-05 23:54:11] 2026-03-05 22:53:12,926 | INFO     | sum of deviations: -44209445793.0
[2026-03-05 23:54:11] 2026-03-05 22:53:12,926 | INFO     | mean x: 1772743840.5
[2026-03-05 23:54:11] 2026-03-05 22:53:12,926 | INFO     | mean y: 2553113.4916666667
[2026-03-05 23:54:11] 2026-03-05 22:53:12,926 | INFO     | intersect: 18285931464.049923
[2026-03-05 23:54:11] 2026-03-05 22:53:12,927 | INFO     | chi2: 0.9346730593400348
[2026-03-05 23:54:11] 2026-03-05 22:53:12,927 | INFO     | current chi2=0.9346730593400348 (change=1.8389881173464153 %)
[2026-03-05 23:54:11] 2026-03-05 22:53:12,927 | INFO     | left removable region: 20
[2026-03-05 23:54:11] 2026-03-05 22:53:12,927 | INFO     | sum of square deviations: 3256879670.0
[2026-03-05 23:54:11] 2026-03-05 22:53:12,929 | INFO     | sum of deviations: -10695630077.999998
[2026-03-05 23:54:11] 2026-03-05 22:53:12,929 | INFO     | mean x: 1772743810.0
[2026-03-05 23:54:11] 2026-03-05 22:53:12,929 | INFO     | mean y: 2552745.6392694064
[2026-03-05 23:54:11] 2026-03-05 22:53:12,929 | INFO     | intersect: 5824263688.62425
[2026-03-05 23:54:11] 2026-03-05 22:53:12,930 | INFO     | chi2: 0.08558888605994447
[2026-03-05 23:54:11] 2026-03-05 22:53:12,930 | INFO     | current memory leak: -3.28 B/s (using 219 data points, chi2=0.09)
[2026-03-05 23:54:11] 2026-03-05 22:53:12,931 | INFO     | could have reported an average CPU frequency of 2249 MHz (12 samples)
[2026-03-05 23:54:11] 2026-03-05 22:53:12,931 | INFO     | ..............................
[2026-03-05 23:54:11] 2026-03-05 22:53:12,931 | INFO     | . Timing measurements:
[2026-03-05 23:54:11] 2026-03-05 22:53:12,931 | INFO     | . get job = 0 s
[2026-03-05 23:54:11] 2026-03-05 22:53:12,931 | INFO     | . initial setup = 7 s
[2026-03-05 23:54:11] 2026-03-05 22:53:12,931 | INFO     | . payload setup = 8 s
[2026-03-05 23:54:11] 2026-03-05 22:53:12,931 | INFO     | . stage-in = 0 s
[2026-03-05 23:54:11] 2026-03-05 22:53:12,932 | INFO     | . payload execution = 15247 s
[2026-03-05 23:54:11] 2026-03-05 22:53:12,932 | INFO     | . stage-out = 4 s
[2026-03-05 23:54:11] 2026-03-05 22:53:12,932 | INFO     | . log creation = 1 s
[2026-03-05 23:54:11] 2026-03-05 22:53:12,932 | INFO     | ..............................
[2026-03-05 23:54:11] 2026-03-05 22:53:13,012 | INFO     | time since job start (15280s) is within the limit (349056.0s)
[2026-03-05 23:54:11] 2026-03-05 22:53:13,072 | INFO     | 
[2026-03-05 23:54:11] 2026-03-05 22:53:13,072 | INFO     | job summary report
[2026-03-05 23:54:11] 2026-03-05 22:53:13,072 | INFO     | --------------------------------------------------
[2026-03-05 23:54:11] 2026-03-05 22:53:13,072 | INFO     | PanDA job id: 7037127445
[2026-03-05 23:54:11] 2026-03-05 22:53:13,072 | INFO     | task id: 48838586
[2026-03-05 23:54:11] 2026-03-05 22:53:13,072 | INFO     | errors: (none)
[2026-03-05 23:54:11] 2026-03-05 22:53:13,072 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-05 23:54:11] 2026-03-05 22:53:13,072 | INFO     | pilot state: finished 
[2026-03-05 23:54:11] 2026-03-05 22:53:13,073 | INFO     | transexitcode: 0
[2026-03-05 23:54:11] 2026-03-05 22:53:13,073 | INFO     | exeerrorcode: 0
[2026-03-05 23:54:11] 2026-03-05 22:53:13,073 | INFO     | exeerrordiag: 
[2026-03-05 23:54:11] 2026-03-05 22:53:13,073 | INFO     | exitcode: 0
[2026-03-05 23:54:11] 2026-03-05 22:53:13,073 | INFO     | exitmsg: OK
[2026-03-05 23:54:11] 2026-03-05 22:53:13,073 | INFO     | cpuconsumptiontime: 61691 s
[2026-03-05 23:54:11] 2026-03-05 22:53:13,073 | INFO     | nevents: 400
[2026-03-05 23:54:11] 2026-03-05 22:53:13,073 | INFO     | neventsw: 0
[2026-03-05 23:54:11] 2026-03-05 22:53:13,073 | INFO     | pid: 12872
[2026-03-05 23:54:11] 2026-03-05 22:53:13,073 | INFO     | pgrp: 12872
[2026-03-05 23:54:11] 2026-03-05 22:53:13,074 | INFO     | corecount: 8
[2026-03-05 23:54:11] 2026-03-05 22:53:13,074 | INFO     | event service: False
[2026-03-05 23:54:11] 2026-03-05 22:53:13,074 | INFO     | sizes: {0: 2295326, 1: 2295787, 12: 2295787, 15260: 2326812, 15265: 2335812, 15267: 2335868, 15268: 2336190}
[2026-03-05 23:54:11] 2026-03-05 22:53:13,074 | INFO     | --------------------------------------------------
[2026-03-05 23:54:11] 2026-03-05 22:53:13,074 | INFO     | 
[2026-03-05 23:54:11] 2026-03-05 22:53:13,074 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2026-03-05 23:54:11] 2026-03-05 22:53:13,556 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-05 23:54:11] 2026-03-05 22:53:13,556 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-05 23:54:11] 2026-03-05 22:53:13,557 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-05 23:54:11] 2026-03-05 22:53:13,557 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-05 23:54:11] 2026-03-05 22:53:13,557 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-05 23:54:11] 2026-03-05 22:53:13,557 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-05 23:54:11] 2026-03-05 22:53:13,557 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-05 23:54:11] 2026-03-05 22:53:13,557 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-05 23:54:11] 2026-03-05 22:53:13,557 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-05 23:54:11] 2026-03-05 22:53:13,557 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-05 23:54:11] 2026-03-05 22:53:13,557 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-05 23:54:11] 2026-03-05 22:53:13,558 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-05 23:54:11] 2026-03-05 22:53:13,558 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-05 23:54:11] 2026-03-05 22:53:13,558 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-05 23:54:11] 2026-03-05 22:53:13,558 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-05 23:54:11] 2026-03-05 22:53:13,558 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-05 23:54:11] 2026-03-05 22:53:13,558 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-05 23:54:11] 2026-03-05 22:53:13,558 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-05 23:54:11] 2026-03-05 22:53:13,558 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-05 23:54:11] 2026-03-05 22:53:13,559 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-05 23:54:11] 2026-03-05 22:53:13,559 | INFO     | job 7037127445 has completed (purged errors)
[2026-03-05 23:54:11] 2026-03-05 22:53:13,559 | INFO     | overall cleanup function is called
[2026-03-05 23:54:11] 2026-03-05 22:53:14,567 | INFO     | --- collectZombieJob: --- 10, [12872]
[2026-03-05 23:54:11] 2026-03-05 22:53:14,568 | INFO     | zombie collector waiting for pid 12872
[2026-03-05 23:54:11] 2026-03-05 22:53:14,568 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 23:54:11] 2026-03-05 22:53:14,568 | INFO     | collected zombie processes
[2026-03-05 23:54:11] 2026-03-05 22:53:14,568 | INFO     | will attempt to kill all subprocesses of pid=12872
[2026-03-05 23:54:11] 2026-03-05 22:53:14,660 | INFO     | process IDs to be killed: [12872] (in reverse order)
[2026-03-05 23:54:11] 2026-03-05 22:53:15,507 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 23:54:11] 2026-03-05 22:53:15,508 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 23:54:11] 2026-03-05 22:53:15,510 | INFO     | did not find any defunct processes belonging to 12872
[2026-03-05 23:54:11] 2026-03-05 22:53:15,511 | INFO     | did not find any defunct processes belonging to 12872
[2026-03-05 23:54:11] 2026-03-05 22:53:15,512 | INFO     | ready for new job
[2026-03-05 23:54:11] 2026-03-05 22:53:15,512 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 23:54:11] 2026-03-05 22:53:15,514 | INFO     | **************************************
[2026-03-05 23:54:11] 2026-03-05 22:53:15,514 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 23:54:11] 2026-03-05 22:53:15,514 | INFO     | **************************************
[2026-03-05 23:54:11] 2026-03-05 22:53:15,514 | INFO     | 
[2026-03-05 23:54:11] 2026-03-05 22:53:15,515 | INFO     | pilot is running in a VM
[2026-03-05 23:54:11] 2026-03-05 22:53:15,515 | INFO     | architecture information:
[2026-03-05 23:54:11] 2026-03-05 22:53:15,526 | INFO     | executing command: cat /etc/os-release
[2026-03-05 23:54:11] 2026-03-05 22:53:15,836 | INFO     | cat /etc/os-release:
[2026-03-05 23:54:11] NAME="CentOS Linux"
[2026-03-05 23:54:11] VERSION="7 (Core)"
[2026-03-05 23:54:11] ID="centos"
[2026-03-05 23:54:11] ID_LIKE="rhel fedora"
[2026-03-05 23:54:11] VERSION_ID="7"
[2026-03-05 23:54:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 23:54:11] ANSI_COLOR="0;31"
[2026-03-05 23:54:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 23:54:11] HOME_URL="https://www.centos.org/"
[2026-03-05 23:54:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 23:54:11] 
[2026-03-05 23:54:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 23:54:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 23:54:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 23:54:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 23:54:11] 
[2026-03-05 23:54:11] 2026-03-05 22:53:15,836 | INFO     | **************************************
[2026-03-05 23:54:11] 2026-03-05 22:53:16,340 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2026-03-05 23:54:11] 2026-03-05 22:53:16,569 | INFO     | sufficient remaining disk space (496723034112 B)
[2026-03-05 23:54:11] 2026-03-05 22:53:16,569 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 23:54:11] 2026-03-05 22:53:16,570 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 23:54:11] 2026-03-05 22:53:16,570 | INFO     | update_server=False
[2026-03-05 23:54:11] 2026-03-05 22:53:16,570 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 23:54:11] 2026-03-05 22:53:16,574 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 23:54:11] 2026-03-05 22:53:16,576 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 23:54:11] 2026-03-05 22:53:16,576 | INFO     | aborting loop
[2026-03-05 23:54:11] 2026-03-05 22:53:16,963 | INFO     | all payload control threads have been joined
[2026-03-05 23:54:11] 2026-03-05 22:53:17,292 | INFO     | all data control threads have been joined
[2026-03-05 23:54:11] 2026-03-05 22:53:17,576 | INFO     | [job] retrieve thread has finished
[2026-03-05 23:54:11] 2026-03-05 22:53:17,582 | INFO     | [job] job monitor thread has finished
[2026-03-05 23:54:11] 2026-03-05 22:53:17,644 | INFO     | [job] validate thread has finished
[2026-03-05 23:54:11] 2026-03-05 22:53:17,943 | INFO     | all job control threads have been joined
[2026-03-05 23:54:11] 2026-03-05 22:53:17,969 | INFO     | [payload] control thread has finished
[2026-03-05 23:54:11] 2026-03-05 22:53:17,973 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 23:54:11] 2026-03-05 22:53:17,994 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 23:54:11] 2026-03-05 22:53:18,058 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 23:54:11] 2026-03-05 22:53:18,141 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 23:54:11] 2026-03-05 22:53:18,142 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 23:54:11] 2026-03-05 22:53:18,265 | INFO     | [payload] failed_post thread has finished
[2026-03-05 23:54:11] 2026-03-05 22:53:18,298 | INFO     | [data] control thread has finished
[2026-03-05 23:54:11] 2026-03-05 22:53:18,484 | INFO     | [data] copytool_in thread has finished
[2026-03-05 23:54:11] 2026-03-05 22:53:18,581 | INFO     | [data] copytool_out thread has finished
[2026-03-05 23:54:11] 2026-03-05 22:53:18,950 | INFO     | [job] control thread has finished
[2026-03-05 23:54:11] 2026-03-05 22:53:18,968 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 23:54:11] 2026-03-05 22:53:19,061 | INFO     | [payload] validate_post thread has finished
[2026-03-05 23:54:11] 2026-03-05 22:53:19,064 | INFO     | [job] queue monitor thread has finished
[2026-03-05 23:54:11] 2026-03-05 22:53:22,151 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 23:54:11] 2026-03-05 22:53:39,955 [wrapper] supervise_pilot (15 min periods counter: 18)
[2026-03-05 23:54:11] 2026-03-05 22:53:46,136 | INFO     | PID=8426 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-05 23:54:11] 2026-03-05 22:53:46,136 | INFO     | .. there are 2 such processes running
[2026-03-05 23:54:11] 2026-03-05 22:53:46,137 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 23:54:11] 2026-03-05 22:53:46,137 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 23:54:11] 2026-03-05 22:53:46,137 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 23:54:11] 2026-03-05 22:53:59,480 | INFO     | [monitor] cgroup control has ended
[2026-03-05 23:54:11] 2026-03-05 22:54:00,110 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139652030605120)>', '<ExcThread(monitor, started 139651448821504)>']
[2026-03-05 23:54:11] 2026-03-05 22:54:00,220 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 23:54:11] 2026-03-05 22:54:00,221 | INFO     | [monitor] control thread has ended
[2026-03-05 23:54:11] 2026-03-05 22:54:05,136 | INFO     | all workflow threads have been joined
[2026-03-05 23:54:11] 2026-03-05 22:54:05,136 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 23:54:11] 2026-03-05 22:54:05,136 | INFO     | traces error code: 0
[2026-03-05 23:54:11] 2026-03-05 22:54:05,136 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 23:54:11] 2026-03-05 22:54:05,438 [wrapper] ==== pilot stdout END ====
[2026-03-05 23:54:11] 2026-03-05 22:54:05,542 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 23:54:11] 2026-03-05 22:54:05,625 [wrapper] pilotpid: 8426
[2026-03-05 23:54:11] 2026-03-05 22:54:05,723 [wrapper] Pilot exit status: 0
[2026-03-05 23:54:11] 2026-03-05 22:54:06,175 [wrapper] pandaids: 7037127445
[2026-03-05 23:54:11] 2026-03-05 22:54:07,309 [wrapper] cleanup supervisor_pilot  1146 8427
[2026-03-05 23:54:11] 2026-03-05 22:54:07,447 [wrapper] Test setup, not cleaning
[2026-03-05 23:54:11] 2026-03-05 22:54:07,557 [wrapper] apfmon messages muted
[2026-03-05 23:54:11] 2026-03-05 22:54:07,670 [wrapper] ==== wrapper stdout END ====
[2026-03-05 23:54:11] 2026-03-05 22:54:07,760 [wrapper] ==== wrapper stderr END ====
[2026-03-05 23:54:11]  *** Error codes and diagnostics ***
[2026-03-05 23:54:11]     "exeErrorCode": 0,
[2026-03-05 23:54:11]     "exeErrorDiag": "",
[2026-03-05 23:54:11]     "pilotErrorCode": 0,
[2026-03-05 23:54:11]     "pilotErrorDiag": "",
[2026-03-05 23:54:11]  *** Listing of results directory ***
[2026-03-05 23:54:11] total 488804
[2026-03-05 23:54:11] -rw-r--r--. 1 boinc boinc    584627 Mar  4 04:50 pilot3.tar.gz
[2026-03-05 23:54:11] -rw-r--r--. 1 boinc boinc      5111 Mar  4 04:50 queuedata.json
[2026-03-05 23:54:11] -rwx------. 1 boinc boinc     36322 Mar  4 04:50 runpilot2-wrapper.sh
[2026-03-05 23:54:11] -rw-r--r--. 1 boinc boinc       100 Mar  5 19:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 23:54:11] -rwxr-xr-x. 1 boinc boinc      7986 Mar  5 19:38 run_atlas
[2026-03-05 23:54:11] -rw-r--r--. 1 boinc boinc       105 Mar  5 19:38 job.xml
[2026-03-05 23:54:11] -rw-r--r--. 1 boinc boinc      6392 Mar  5 19:38 init_data.xml
[2026-03-05 23:54:11] -rw-r--r--. 2 boinc boinc 276437504 Mar  5 19:38 EVNT.48220221._000215.pool.root.1
[2026-03-05 23:54:11] -rw-r--r--. 2 boinc boinc     15845 Mar  5 19:38 start_atlas.sh
[2026-03-05 23:54:11] drwxrwx--x. 2 boinc boinc        68 Mar  5 19:38 shared
[2026-03-05 23:54:11] -rw-r--r--. 2 boinc boinc    597959 Mar  5 19:38 input.tar.gz
[2026-03-05 23:54:11] -rw-r--r--. 1 boinc boinc         0 Mar  5 19:38 boinc_lockfile
[2026-03-05 23:54:11] -rw-r--r--. 1 boinc boinc      2561 Mar  5 19:38 pandaJob.out
[2026-03-05 23:54:11] -rw-------. 1 boinc boinc    998478 Mar  5 19:38 agis_schedconf.cvmfs.json
[2026-03-05 23:54:11] -rw-------. 1 boinc boinc       415 Mar  5 19:38 workernode_map.json
[2026-03-05 23:54:11] drwx------. 5 boinc boinc      4096 Mar  5 19:38 pilot3
[2026-03-05 23:54:11] -rw-------. 1 boinc boinc 214973866 Mar  5 23:51 HITS.48838586._005325.pool.root.1
[2026-03-05 23:54:11] -rw-r--r--. 1 boinc boinc       530 Mar  5 23:52 boinc_task_state.xml
[2026-03-05 23:54:11] -rw-------. 1 boinc boinc      1029 Mar  5 23:53 memory_monitor_summary.json
[2026-03-05 23:54:11] -rw-------. 1 boinc boinc   1521291 Mar  5 23:53 agis_ddmendpoints.agis.ALL.json
[2026-03-05 23:54:11] -rw-------. 1 boinc boinc    462487 Mar  5 23:53 log.48838586._005325.job.log.tgz.1
[2026-03-05 23:54:11] -rw-------. 1 boinc boinc      6307 Mar  5 23:53 heartbeat.json
[2026-03-05 23:54:11] -rw-------. 1 boinc boinc        95 Mar  5 23:53 pilot_heartbeat.json
[2026-03-05 23:54:11] -rw-r--r--. 1 boinc boinc        28 Mar  5 23:53 wrapper_checkpoint.txt
[2026-03-05 23:54:11] -rw-r--r--. 1 boinc boinc      8192 Mar  5 23:53 boinc_mmap_file
[2026-03-05 23:54:11] -rw-------. 1 boinc boinc      4880 Mar  5 23:54 pilotlog.txt
[2026-03-05 23:54:11] -rw-------. 1 boinc boinc   2141182 Mar  5 23:54 log.48838586._005325.job.log.1
[2026-03-05 23:54:11] -rw-------. 1 boinc boinc       357 Mar  5 23:54 output.list
[2026-03-05 23:54:11] -rw-r--r--. 1 boinc boinc       620 Mar  5 23:54 runtime_log
[2026-03-05 23:54:11] -rw-------. 1 boinc boinc   2621440 Mar  5 23:54 result.tar.gz
[2026-03-05 23:54:11] -rw-r--r--. 1 boinc boinc      8832 Mar  5 23:54 runtime_log.err
[2026-03-05 23:54:11] -rw-------. 1 boinc boinc       655 Mar  5 23:54 l9xNDmGRsH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmDFJLDmEG69Ln.diag
[2026-03-05 23:54:11] -rw-r--r--. 1 boinc boinc     20700 Mar  5 23:54 stderr.txt
[2026-03-05 23:54:11] HITS file was successfully produced:
[2026-03-05 23:54:11] -rw-------. 1 boinc boinc 214973866 Mar  5 23:51 shared/HITS.pool.root.1
[2026-03-05 23:54:11]  *** Contents of shared directory: ***
[2026-03-05 23:54:11] total 483056
[2026-03-05 23:54:11] -rw-r--r--. 2 boinc boinc 276437504 Mar  5 19:38 ATLAS.root_0
[2026-03-05 23:54:11] -rw-r--r--. 2 boinc boinc     15845 Mar  5 19:38 start_atlas.sh
[2026-03-05 23:54:11] -rw-r--r--. 2 boinc boinc    597959 Mar  5 19:38 input.tar.gz
[2026-03-05 23:54:11] -rw-------. 1 boinc boinc 214973866 Mar  5 23:51 HITS.pool.root.1
[2026-03-05 23:54:11] -rw-------. 1 boinc boinc   2621440 Mar  5 23:54 result.tar.gz
23:54:13 (4513): run_atlas exited; CPU time 61828.793631
23:54:13 (4513): called boinc_finish(0)

</stderr_txt>
]]>

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