Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:41:39 (3346939): wrapper (7.7.26015): starting
13:41:39 (3346939): wrapper: running run_atlas (--nthreads 4)
[2026-03-05 13:41:39] Arguments: --nthreads 4
[2026-03-05 13:41:39] Threads: 4
[2026-03-05 13:41:39] Checking for CVMFS
[2026-03-05 13:41:39] No cvmfs_config command found, will try listing directly
[2026-03-05 13:41:39] CVMFS is ok
[2026-03-05 13:41:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-05 13:41:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-05 13:41:39] Further information can be found at the LHC@home message board.
[2026-03-05 13:41:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 13:41:39] Checking for apptainer binary...
[2026-03-05 13:41:39] which: no apptainer in ((null))
[2026-03-05 13:41:39] apptainer is not installed, using version from CVMFS
[2026-03-05 13:41:39] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 13:41:39] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot88/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2026-03-05 13:41:39] apptainer works
[2026-03-05 13:41:39] Set ATHENA_PROC_NUMBER=4
[2026-03-05 13:41:39] Set ATHENA_CORE_NUMBER=4
[2026-03-05 13:41:39] Starting ATLAS job with PandaID=7041271256
[2026-03-05 13:41:39] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot88/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 15:15:14]  *** The last 200 lines of the pilot log: ***
[2026-03-05 15:15:14]  lfn=log.48958627._003011.job.log.tgz.1
[2026-03-05 15:15:14]  mtime=0
[2026-03-05 15:15:14]  protocol_id=None
[2026-03-05 15:15:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-05 15:15:14]  replicas=None
[2026-03-05 15:15:14]  scope=mc23_13p6TeV
[2026-03-05 15:15:14]  status=None
[2026-03-05 15:15:14]  status_code=0
[2026-03-05 15:15:14]  storage_token=
[2026-03-05 15:15:14]  surl=/var/lib/boinc/var/slot88/slots/1/PanDA_Pilot-7041271256/log.48958627._003011.job.log.tgz.1
[2026-03-05 15:15:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/64/ed/log.48958627._003011.job.log.tgz.1
[2026-03-05 15:15:14]  workdir=None
[2026-03-05 15:15:14] ]
[2026-03-05 15:15:14] 2026-03-05 14:14:34,691 | INFO     | transferring file log.48958627._003011.job.log.tgz.1 from /var/lib/boinc/var/slot88/slots/1/PanDA_Pilot-7041271256/log.48958627._003011.job.log.tgz.1 to /var/lib/b
[2026-03-05 15:15:14] 2026-03-05 14:14:34,691 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot88/slots/1/PanDA_Pilot-7041271256/log.48958627._003011.job.log.tgz.1 /var/lib/boinc/var/slot88/slots/1/lo
[2026-03-05 15:15:14] 2026-03-05 14:14:34,712 | INFO     | adding to output.list: log.48958627._003011.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/64/ed/log.48958627._003011.job.log.tg
[2026-03-05 15:15:14] 2026-03-05 14:14:34,713 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-05 15:15:14] 2026-03-05 14:14:34,713 | INFO     | summary of transferred files:
[2026-03-05 15:15:14] 2026-03-05 14:14:34,713 | INFO     |  -- lfn=log.48958627._003011.job.log.tgz.1, status_code=0, status=transferred
[2026-03-05 15:15:14] 2026-03-05 14:14:34,713 | INFO     | stage-out finished correctly
[2026-03-05 15:15:14] 2026-03-05 14:14:35,166 | INFO     | PID=3368926 has CPU usage=13.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-05 15:15:14] 2026-03-05 14:14:35,166 | INFO     | .. there are 41 such processes running
[2026-03-05 15:15:14] 2026-03-05 14:14:36,167 | INFO     | time since job start (5564s) is within the limit (349056.0s)
[2026-03-05 15:15:14] 2026-03-05 14:14:37,786 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-05 15:15:14] 2026-03-05 14:14:38,170 | INFO     | time since job start (5566s) is within the limit (349056.0s)
[2026-03-05 15:15:14] 2026-03-05 14:14:39,225 | WARNING  | process 3404833 can no longer be monitored (due to stat problems) - aborting
[2026-03-05 15:15:14] 2026-03-05 14:14:39,225 | INFO     | using path: /var/lib/boinc/var/slot88/slots/1/PanDA_Pilot-7041271256/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 15:15:14] 2026-03-05 14:14:39,673 | INFO     | number of running child processes to parent process 3404833: 1
[2026-03-05 15:15:14] 2026-03-05 14:14:39,673 | INFO     | maximum number of monitored processes: 6
[2026-03-05 15:15:14] 2026-03-05 14:14:40,012 | INFO     | job 7041271256 has state=finished
[2026-03-05 15:15:14] 2026-03-05 14:14:40,012 | INFO     | preparing for final server update for job 7041271256 in state='finished'
[2026-03-05 15:15:14] 2026-03-05 14:14:40,013 | INFO     | reading metadata from: /var/lib/boinc/var/slot88/slots/1/PanDA_Pilot-7041271256/jobReport.json
[2026-03-05 15:15:14] 2026-03-05 14:14:40,014 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot88/slots/1/workernode_map.json
[2026-03-05 15:15:14] 2026-03-05 14:14:40,014 | INFO     | this job has now completed (state=finished)
[2026-03-05 15:15:14] 2026-03-05 14:14:40,014 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-05 15:15:14] 2026-03-05 14:14:40,014 | INFO     | log transfer has been attempted: DONE
[2026-03-05 15:15:14] 2026-03-05 14:14:40,014 | INFO     | job 7041271256 has finished - writing final server update
[2026-03-05 15:15:14] 2026-03-05 14:14:40,015 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_4116624/.job.ad'
[2026-03-05 15:15:14] 2026-03-05 14:14:40,015 | INFO     | total number of processed events: 400 (read)
[2026-03-05 15:15:14] 2026-03-05 14:14:40,032 | INFO     | using path: /var/lib/boinc/var/slot88/slots/1/PanDA_Pilot-7041271256/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 15:15:14] 2026-03-05 14:14:40,032 | INFO     | extracted standard info from prmon json
[2026-03-05 15:15:14] 2026-03-05 14:14:40,033 | INFO     | extracted standard memory fields from prmon json
[2026-03-05 15:15:14] 2026-03-05 14:14:40,033 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-05 15:15:14] 2026-03-05 14:14:40,033 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-05 15:15:14] 2026-03-05 14:14:40,033 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-05 15:15:14] 2026-03-05 14:14:40,034 | INFO     | fitting pss+swap vs Time
[2026-03-05 15:15:14] 2026-03-05 14:14:40,034 | INFO     | sum of square deviations: 183761585.0
[2026-03-05 15:15:14] 2026-03-05 14:14:40,034 | INFO     | sum of deviations: -361108257.49999994
[2026-03-05 15:15:14] 2026-03-05 14:14:40,034 | INFO     | mean x: 1772717370.5
[2026-03-05 15:15:14] 2026-03-05 14:14:40,034 | INFO     | mean y: 2349533.869047619
[2026-03-05 15:15:14] 2026-03-05 14:14:40,034 | INFO     | intersect: 3485900683.589686
[2026-03-05 15:15:14] 2026-03-05 14:14:40,034 | INFO     | chi2: 0.0008741560972210064
[2026-03-05 15:15:14] 2026-03-05 14:14:40,035 | INFO     | current memory leak: -1.97 B/s (using 84 data points, chi2=0.00)
[2026-03-05 15:15:14] 2026-03-05 14:14:40,035 | INFO     | could have reported an average CPU frequency of 3643 MHz (7 samples)
[2026-03-05 15:15:14] 2026-03-05 14:14:40,035 | INFO     | ..............................
[2026-03-05 15:15:14] 2026-03-05 14:14:40,035 | INFO     | . Timing measurements:
[2026-03-05 15:15:14] 2026-03-05 14:14:40,035 | INFO     | . get job = 0 s
[2026-03-05 15:15:14] 2026-03-05 14:14:40,035 | INFO     | . initial setup = 5 s
[2026-03-05 15:15:14] 2026-03-05 14:14:40,035 | INFO     | . payload setup = 5 s
[2026-03-05 15:15:14] 2026-03-05 14:14:40,035 | INFO     | . stage-in = 0 s
[2026-03-05 15:15:14] 2026-03-05 14:14:40,035 | INFO     | . payload execution = 5540 s
[2026-03-05 15:15:14] 2026-03-05 14:14:40,035 | INFO     | . stage-out = 0 s
[2026-03-05 15:15:14] 2026-03-05 14:14:40,035 | INFO     | . log creation = 0 s
[2026-03-05 15:15:14] 2026-03-05 14:14:40,035 | INFO     | ..............................
[2026-03-05 15:15:14] 2026-03-05 14:14:40,085 | INFO     | 
[2026-03-05 15:15:14] 2026-03-05 14:14:40,085 | INFO     | job summary report
[2026-03-05 15:15:14] 2026-03-05 14:14:40,085 | INFO     | --------------------------------------------------
[2026-03-05 15:15:14] 2026-03-05 14:14:40,085 | INFO     | PanDA job id: 7041271256
[2026-03-05 15:15:14] 2026-03-05 14:14:40,085 | INFO     | task id: 48958627
[2026-03-05 15:15:14] 2026-03-05 14:14:40,085 | INFO     | errors: (none)
[2026-03-05 15:15:14] 2026-03-05 14:14:40,085 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-05 15:15:14] 2026-03-05 14:14:40,085 | INFO     | pilot state: finished 
[2026-03-05 15:15:14] 2026-03-05 14:14:40,085 | INFO     | transexitcode: 0
[2026-03-05 15:15:14] 2026-03-05 14:14:40,088 | INFO     | exeerrorcode: 0
[2026-03-05 15:15:14] 2026-03-05 14:14:40,088 | INFO     | exeerrordiag: 
[2026-03-05 15:15:14] 2026-03-05 14:14:40,088 | INFO     | exitcode: 0
[2026-03-05 15:15:14] 2026-03-05 14:14:40,088 | INFO     | exitmsg: OK
[2026-03-05 15:15:14] 2026-03-05 14:14:40,088 | INFO     | cpuconsumptiontime: 21296 s
[2026-03-05 15:15:14] 2026-03-05 14:14:40,088 | INFO     | nevents: 400
[2026-03-05 15:15:14] 2026-03-05 14:14:40,088 | INFO     | neventsw: 0
[2026-03-05 15:15:14] 2026-03-05 14:14:40,088 | INFO     | pid: 3404833
[2026-03-05 15:15:14] 2026-03-05 14:14:40,088 | INFO     | pgrp: 3404833
[2026-03-05 15:15:14] 2026-03-05 14:14:40,088 | INFO     | corecount: 4
[2026-03-05 15:15:14] 2026-03-05 14:14:40,088 | INFO     | event service: False
[2026-03-05 15:15:14] 2026-03-05 14:14:40,088 | INFO     | sizes: {0: 2295762, 10: 2295762, 5550: 2322398, 5552: 2331418, 5555: 2331474, 5557: 2331668}
[2026-03-05 15:15:14] 2026-03-05 14:14:40,088 | INFO     | --------------------------------------------------
[2026-03-05 15:15:14] 2026-03-05 14:14:40,089 | INFO     | 
[2026-03-05 15:15:14] 2026-03-05 14:14:40,089 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot88/slots/1
[2026-03-05 15:15:14] 2026-03-05 14:14:40,109 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-05 15:15:14] 2026-03-05 14:14:40,109 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-05 15:15:14] 2026-03-05 14:14:40,109 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-05 15:15:14] 2026-03-05 14:14:40,109 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-05 15:15:14] 2026-03-05 14:14:40,109 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-05 15:15:14] 2026-03-05 14:14:40,109 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-05 15:15:14] 2026-03-05 14:14:40,109 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-05 15:15:14] 2026-03-05 14:14:40,109 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-05 15:15:14] 2026-03-05 14:14:40,109 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-05 15:15:14] 2026-03-05 14:14:40,109 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-05 15:15:14] 2026-03-05 14:14:40,109 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-05 15:15:14] 2026-03-05 14:14:40,109 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-05 15:15:14] 2026-03-05 14:14:40,109 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-05 15:15:14] 2026-03-05 14:14:40,109 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-05 15:15:14] 2026-03-05 14:14:40,109 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-05 15:15:14] 2026-03-05 14:14:40,110 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-05 15:15:14] 2026-03-05 14:14:40,110 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-05 15:15:14] 2026-03-05 14:14:40,110 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-05 15:15:14] 2026-03-05 14:14:40,110 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-05 15:15:14] 2026-03-05 14:14:40,110 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-05 15:15:14] 2026-03-05 14:14:40,110 | INFO     | job 7041271256 has completed (purged errors)
[2026-03-05 15:15:14] 2026-03-05 14:14:40,110 | INFO     | overall cleanup function is called
[2026-03-05 15:15:14] 2026-03-05 14:14:41,116 | INFO     | --- collectZombieJob: --- 10, [3404833]
[2026-03-05 15:15:14] 2026-03-05 14:14:41,116 | INFO     | zombie collector waiting for pid 3404833
[2026-03-05 15:15:14] 2026-03-05 14:14:41,116 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 15:15:14] 2026-03-05 14:14:41,116 | INFO     | collected zombie processes
[2026-03-05 15:15:14] 2026-03-05 14:14:41,116 | INFO     | will attempt to kill all subprocesses of pid=3404833
[2026-03-05 15:15:14] 2026-03-05 14:14:41,561 | INFO     | process IDs to be killed: [3404833] (in reverse order)
[2026-03-05 15:15:14] 2026-03-05 14:14:41,756 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 15:15:14] 2026-03-05 14:14:41,756 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 15:15:14] 2026-03-05 14:14:41,786 | INFO     | did not find any defunct processes belonging to 3404833
[2026-03-05 15:15:14] 2026-03-05 14:14:41,816 | INFO     | did not find any defunct processes belonging to 3404833
[2026-03-05 15:15:14] 2026-03-05 14:14:41,816 | INFO     | ready for new job
[2026-03-05 15:15:14] 2026-03-05 14:14:41,816 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 15:15:14] 2026-03-05 14:14:41,817 | INFO     | **************************************
[2026-03-05 15:15:14] 2026-03-05 14:14:41,818 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 15:15:14] 2026-03-05 14:14:41,818 | INFO     | **************************************
[2026-03-05 15:15:14] 2026-03-05 14:14:41,818 | INFO     | 
[2026-03-05 15:15:14] 2026-03-05 14:14:41,824 | INFO     | architecture information:
[2026-03-05 15:15:14] 2026-03-05 14:14:41,824 | INFO     | executing command: cat /etc/os-release
[2026-03-05 15:15:14] 2026-03-05 14:14:41,837 | INFO     | cat /etc/os-release:
[2026-03-05 15:15:14] NAME="CentOS Linux"
[2026-03-05 15:15:14] VERSION="7 (Core)"
[2026-03-05 15:15:14] ID="centos"
[2026-03-05 15:15:14] ID_LIKE="rhel fedora"
[2026-03-05 15:15:14] VERSION_ID="7"
[2026-03-05 15:15:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 15:15:14] ANSI_COLOR="0;31"
[2026-03-05 15:15:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 15:15:14] HOME_URL="https://www.centos.org/"
[2026-03-05 15:15:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 15:15:14] 
[2026-03-05 15:15:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 15:15:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 15:15:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 15:15:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 15:15:14] 
[2026-03-05 15:15:14] 2026-03-05 14:14:41,837 | INFO     | **************************************
[2026-03-05 15:15:14] 2026-03-05 14:14:42,340 | INFO     | executing command: df -mP /var/lib/boinc/var/slot88/slots/1
[2026-03-05 15:15:14] 2026-03-05 14:14:42,358 | INFO     | sufficient remaining disk space (20396900352 B)
[2026-03-05 15:15:14] 2026-03-05 14:14:42,359 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 15:15:14] 2026-03-05 14:14:42,359 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 15:15:14] 2026-03-05 14:14:42,359 | INFO     | update_server=False
[2026-03-05 15:15:14] 2026-03-05 14:14:42,359 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 15:15:14] 2026-03-05 14:14:42,742 | INFO     | all data control threads have been joined
[2026-03-05 15:15:14] 2026-03-05 14:14:42,774 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 15:15:14] 2026-03-05 14:14:43,181 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 15:15:14] 2026-03-05 14:14:43,181 | INFO     | aborting loop
[2026-03-05 15:15:14] 2026-03-05 14:14:43,215 | INFO     | all job control threads have been joined
[2026-03-05 15:15:14] 2026-03-05 14:14:43,364 | INFO     | [job] retrieve thread has finished
[2026-03-05 15:15:14] 2026-03-05 14:14:43,608 | INFO     | all payload control threads have been joined
[2026-03-05 15:15:14] 2026-03-05 14:14:43,695 | INFO     | [payload] validate_post thread has finished
[2026-03-05 15:15:14] 2026-03-05 14:14:43,736 | INFO     | [job] validate thread has finished
[2026-03-05 15:15:14] 2026-03-05 14:14:43,747 | INFO     | [data] control thread has finished
[2026-03-05 15:15:14] 2026-03-05 14:14:43,769 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 15:15:14] 2026-03-05 14:14:43,840 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 15:15:14] 2026-03-05 14:14:43,920 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 15:15:14] 2026-03-05 14:14:44,001 | INFO     | [data] copytool_in thread has finished
[2026-03-05 15:15:14] 2026-03-05 14:14:44,186 | INFO     | [job] job monitor thread has finished
[2026-03-05 15:15:14] 2026-03-05 14:14:44,220 | INFO     | [job] control thread has finished
[2026-03-05 15:15:14] 2026-03-05 14:14:44,456 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 15:15:14] 2026-03-05 14:14:44,511 | INFO     | [payload] failed_post thread has finished
[2026-03-05 15:15:14] 2026-03-05 14:14:44,614 | INFO     | [payload] control thread has finished
[2026-03-05 15:15:14] 2026-03-05 14:14:44,779 | INFO     | [data] copytool_out thread has finished
[2026-03-05 15:15:14] 2026-03-05 14:14:45,094 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 15:15:14] 2026-03-05 14:14:46,099 | INFO     | [job] queue monitor thread has finished
[2026-03-05 15:15:14] 2026-03-05 14:14:47,846 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 15:15:14] 2026-03-05 14:14:52,992 | INFO     | job.realtimelogging is not enabled
[2026-03-05 15:15:14] 2026-03-05 14:14:53,997 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 15:15:14] 2026-03-05 14:15:01,458 | INFO     | [monitor] cgroup control has ended
[2026-03-05 15:15:14] 2026-03-05 14:15:02,310 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22862785886016)>', '<ExcThread(monitor, started 22862542145280)>']
[2026-03-05 15:15:14] 2026-03-05 14:15:07,335 | INFO     | all workflow threads have been joined
[2026-03-05 15:15:14] 2026-03-05 14:15:07,335 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 15:15:14] 2026-03-05 14:15:07,335 | INFO     | traces error code: 0
[2026-03-05 15:15:14] 2026-03-05 14:15:07,335 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 15:15:14] 2026-03-05 14:15:11,833 | INFO     | PID=3368926 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-05 15:15:14] 2026-03-05 14:15:11,833 | INFO     | .. there are 40 such processes running
[2026-03-05 15:15:14] 2026-03-05 14:15:11,834 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 15:15:14] 2026-03-05 14:15:11,834 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 15:15:14] 2026-03-05 14:15:11,834 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 15:15:14] 2026-03-05 14:15:11,834 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 15:15:14] 2026-03-05 14:15:11,834 | INFO     | [monitor] control thread has ended
[2026-03-05 15:15:14] 2026-03-05 14:15:12,030 [wrapper] ==== pilot stdout END ====
[2026-03-05 15:15:14] 2026-03-05 14:15:12,032 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 15:15:14] 2026-03-05 14:15:12,035 [wrapper] pilotpid: 3368926
[2026-03-05 15:15:14] 2026-03-05 14:15:12,037 [wrapper] Pilot exit status: 0
[2026-03-05 15:15:14] 2026-03-05 14:15:12,043 [wrapper] pandaids: 7041271256
[2026-03-05 15:15:14] 2026-03-05 14:15:12,151 [wrapper] cleanup supervisor_pilot 4170149 3368927
[2026-03-05 15:15:14] 2026-03-05 14:15:12,154 [wrapper] Test setup, not cleaning
[2026-03-05 15:15:14] 2026-03-05 14:15:12,156 [wrapper] apfmon messages muted
[2026-03-05 15:15:14] 2026-03-05 14:15:12,158 [wrapper] ==== wrapper stdout END ====
[2026-03-05 15:15:14] 2026-03-05 14:15:12,159 [wrapper] ==== wrapper stderr END ====
[2026-03-05 15:15:14]  *** Error codes and diagnostics ***
[2026-03-05 15:15:14]     "exeErrorCode": 0,
[2026-03-05 15:15:14]     "exeErrorDiag": "",
[2026-03-05 15:15:14]     "pilotErrorCode": 0,
[2026-03-05 15:15:14]     "pilotErrorDiag": "",
[2026-03-05 15:15:14]  *** Listing of results directory ***
[2026-03-05 15:15:14] total 473924
[2026-03-05 15:15:14] -rw-r--r--. 1 boinc boinc    584627 Mar  5 07:59 pilot3.tar.gz
[2026-03-05 15:15:14] -rwx------. 1 boinc boinc     36322 Mar  5 08:01 runpilot2-wrapper.sh
[2026-03-05 15:15:14] -rw-r--r--. 1 boinc boinc      5111 Mar  5 08:02 queuedata.json
[2026-03-05 15:15:14] -rw-r--r--. 1 boinc boinc       100 Mar  5 13:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 15:15:14] -rwxr-xr-x. 1 boinc boinc      7986 Mar  5 13:41 run_atlas
[2026-03-05 15:15:14] -rw-r--r--. 1 boinc boinc       105 Mar  5 13:41 job.xml
[2026-03-05 15:15:14] -rw-r--r--. 1 boinc boinc      6705 Mar  5 13:41 init_data.xml
[2026-03-05 15:15:14] -rw-r--r--. 2 boinc boinc 275556721 Mar  5 13:41 EVNT.48958625._000120.pool.root.1
[2026-03-05 15:15:14] -rw-r--r--. 2 boinc boinc     15845 Mar  5 13:41 start_atlas.sh
[2026-03-05 15:15:14] drwxrwx--x. 2 boinc boinc      4096 Mar  5 13:41 shared
[2026-03-05 15:15:14] -rw-r--r--. 2 boinc boinc    597947 Mar  5 13:41 input.tar.gz
[2026-03-05 15:15:14] -rw-r--r--. 1 boinc boinc         0 Mar  5 13:41 boinc_lockfile
[2026-03-05 15:15:14] -rw-r--r--. 1 boinc boinc      2521 Mar  5 13:41 pandaJob.out
[2026-03-05 15:15:14] -rw-------. 1 boinc boinc    998459 Mar  5 13:41 agis_schedconf.cvmfs.json
[2026-03-05 15:15:14] -rw-------. 1 boinc boinc   1521291 Mar  5 13:41 agis_ddmendpoints.agis.ALL.json
[2026-03-05 15:15:14] -rw-------. 1 boinc boinc       444 Mar  5 13:41 workernode_map.json
[2026-03-05 15:15:14] drwx------. 5 boinc boinc      4096 Mar  5 13:41 pilot3
[2026-03-05 15:15:14] -rw-r--r--. 1 boinc boinc       529 Mar  5 15:14 boinc_task_state.xml
[2026-03-05 15:15:14] -rw-------. 1 boinc boinc 203648656 Mar  5 15:14 HITS.48958627._003011.pool.root.1
[2026-03-05 15:15:14] -rw-------. 1 boinc boinc      1033 Mar  5 15:14 memory_monitor_summary.json
[2026-03-05 15:15:14] -rw-------. 1 boinc boinc    270552 Mar  5 15:14 log.48958627._003011.job.log.tgz.1
[2026-03-05 15:15:14] -rw-------. 1 boinc boinc      6366 Mar  5 15:14 heartbeat.json
[2026-03-05 15:15:14] -rw-r--r--. 1 boinc boinc        27 Mar  5 15:15 wrapper_checkpoint.txt
[2026-03-05 15:15:14] -rw-------. 1 boinc boinc        95 Mar  5 15:15 pilot_heartbeat.json
[2026-03-05 15:15:14] -rw-------. 1 boinc boinc       823 Mar  5 15:15 pilotlog.txt
[2026-03-05 15:15:14] -rw-------. 1 boinc boinc    808488 Mar  5 15:15 log.48958627._003011.job.log.1
[2026-03-05 15:15:14] -rw-------. 1 boinc boinc       357 Mar  5 15:15 output.list
[2026-03-05 15:15:14] -rw-r--r--. 1 boinc boinc       620 Mar  5 15:15 runtime_log
[2026-03-05 15:15:14] -rw-------. 1 boinc boinc   1095680 Mar  5 15:15 result.tar.gz
[2026-03-05 15:15:14] -rw-r--r--. 1 boinc boinc      9204 Mar  5 15:15 runtime_log.err
[2026-03-05 15:15:14] -rw-------. 1 boinc boinc       662 Mar  5 15:15 ZLnKDmhtHI9n9Rq4apOajLDm4fhM0noT9bVooX4SDm95KLDm8OBOcm.diag
[2026-03-05 15:15:14] -rw-r--r--. 1 boinc boinc      8192 Mar  5 15:15 boinc_mmap_file
[2026-03-05 15:15:14] -rw-r--r--. 1 boinc boinc     21609 Mar  5 15:15 stderr.txt
[2026-03-05 15:15:14] HITS file was successfully produced:
[2026-03-05 15:15:14] -rw-------. 1 boinc boinc 203648656 Mar  5 15:14 shared/HITS.pool.root.1
[2026-03-05 15:15:14]  *** Contents of shared directory: ***
[2026-03-05 15:15:14] total 469656
[2026-03-05 15:15:14] -rw-r--r--. 2 boinc boinc 275556721 Mar  5 13:41 ATLAS.root_0
[2026-03-05 15:15:14] -rw-r--r--. 2 boinc boinc     15845 Mar  5 13:41 start_atlas.sh
[2026-03-05 15:15:14] -rw-r--r--. 2 boinc boinc    597947 Mar  5 13:41 input.tar.gz
[2026-03-05 15:15:14] -rw-------. 1 boinc boinc 203648656 Mar  5 15:14 HITS.pool.root.1
[2026-03-05 15:15:14] -rw-------. 1 boinc boinc   1095680 Mar  5 15:15 result.tar.gz
15:15:15 (3346939): run_atlas exited; CPU time 21549.599281
15:15:15 (3346939): called boinc_finish(0)

</stderr_txt>
]]>

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