Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
01:27:34 (1799659): wrapper (7.7.26015): starting
01:27:34 (1799659): wrapper: running run_atlas (--nthreads 4)
[2026-03-07 01:27:34] Arguments: --nthreads 4
[2026-03-07 01:27:34] Threads: 4
[2026-03-07 01:27:34] Checking for CVMFS
[2026-03-07 01:27:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-07 01:27:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-07 01:27:34] Running cvmfs_config stat atlas.cern.ch
[2026-03-07 01:27:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-07 01:27:34] 2.13.3.0 11582 27403 46256 156977 3 50 32750747 33554432 0 130560 0 13001655 99.986 973765 319 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-03-07 01:27:34] CVMFS is ok
[2026-03-07 01:27:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 01:27:34] Checking for apptainer binary...
[2026-03-07 01:27:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-07 01:27:34] Running /usr/bin/apptainer --version
[2026-03-07 01:27:34] apptainer version 1.4.5
[2026-03-07 01:27:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 01:27:34] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-03-07 01:27:34] apptainer works
[2026-03-07 01:27:34] Set ATHENA_PROC_NUMBER=4
[2026-03-07 01:27:34] Set ATHENA_CORE_NUMBER=4
[2026-03-07 01:27:34] Starting ATLAS job with PandaID=7040398994
[2026-03-07 01:27:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 02:31:54]  *** The last 200 lines of the pilot log: ***
[2026-03-07 02:31:54]  guid=d77b6025-2da1-4e9f-ae4a-a4e85d6235af
[2026-03-07 02:31:54]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-07 02:31:54]  is_altstaged=None
[2026-03-07 02:31:54]  is_tar=False
[2026-03-07 02:31:54]  lfn=log.48973452._000647.job.log.tgz.1
[2026-03-07 02:31:54]  mtime=0
[2026-03-07 02:31:54]  protocol_id=None
[2026-03-07 02:31:54]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-07 02:31:54]  replicas=None
[2026-03-07 02:31:54]  scope=mc23_13p6TeV
[2026-03-07 02:31:54]  status=None
[2026-03-07 02:31:54]  status_code=0
[2026-03-07 02:31:54]  storage_token=
[2026-03-07 02:31:54]  surl=/home/ek/BOINC/slots/0/PanDA_Pilot-7040398994/log.48973452._000647.job.log.tgz.1
[2026-03-07 02:31:54]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e5/8a/log.48973452._000647.job.log.tgz.1
[2026-03-07 02:31:54]  workdir=None
[2026-03-07 02:31:54] ]
[2026-03-07 02:31:54] 2026-03-07 00:30:58,692 | INFO     | transferring file log.48973452._000647.job.log.tgz.1 from /home/ek/BOINC/slots/0/PanDA_Pilot-7040398994/log.48973452._000647.job.log.tgz.1 to /home/ek/BOINC/slots/
[2026-03-07 02:31:54] 2026-03-07 00:30:58,692 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/0/PanDA_Pilot-7040398994/log.48973452._000647.job.log.tgz.1 /home/ek/BOINC/slots/0/log.48973452._000647.job
[2026-03-07 02:31:54] 2026-03-07 00:30:58,700 | INFO     | adding to output.list: log.48973452._000647.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e5/8a/log.48973452._000647.job.log.tg
[2026-03-07 02:31:54] 2026-03-07 00:30:58,701 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-07 02:31:54] 2026-03-07 00:30:58,701 | INFO     | summary of transferred files:
[2026-03-07 02:31:54] 2026-03-07 00:30:58,701 | INFO     |  -- lfn=log.48973452._000647.job.log.tgz.1, status_code=0, status=transferred
[2026-03-07 02:31:54] 2026-03-07 00:30:58,701 | INFO     | stage-out finished correctly
[2026-03-07 02:31:54] 2026-03-07 00:31:00,542 | INFO     | time since job start (3797s) is within the limit (349056.0s)
[2026-03-07 02:31:54] 2026-03-07 00:31:01,286 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-07 02:31:54] 2026-03-07 00:31:02,125 | WARNING  | process 1808318 can no longer be monitored (due to stat problems) - aborting
[2026-03-07 02:31:54] 2026-03-07 00:31:02,126 | INFO     | using path: /home/ek/BOINC/slots/0/PanDA_Pilot-7040398994/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 02:31:54] 2026-03-07 00:31:02,131 | INFO     | job 7040398994 has state=finished
[2026-03-07 02:31:54] 2026-03-07 00:31:02,131 | INFO     | preparing for final server update for job 7040398994 in state='finished'
[2026-03-07 02:31:54] 2026-03-07 00:31:02,131 | INFO     | reading metadata from: /home/ek/BOINC/slots/0/PanDA_Pilot-7040398994/jobReport.json
[2026-03-07 02:31:54] 2026-03-07 00:31:02,132 | INFO     | added worker_node to metadata from /home/ek/BOINC/slots/0/workernode_map.json
[2026-03-07 02:31:54] 2026-03-07 00:31:02,132 | INFO     | this job has now completed (state=finished)
[2026-03-07 02:31:54] 2026-03-07 00:31:02,132 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-07 02:31:54] 2026-03-07 00:31:02,132 | INFO     | log transfer has been attempted: DONE
[2026-03-07 02:31:54] 2026-03-07 00:31:02,132 | INFO     | job 7040398994 has finished - writing final server update
[2026-03-07 02:31:54] 2026-03-07 00:31:02,132 | INFO     | total number of processed events: 400 (read)
[2026-03-07 02:31:54] 2026-03-07 00:31:02,134 | INFO     | using path: /home/ek/BOINC/slots/0/PanDA_Pilot-7040398994/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 02:31:54] 2026-03-07 00:31:02,134 | INFO     | extracted standard info from prmon json
[2026-03-07 02:31:54] 2026-03-07 00:31:02,134 | INFO     | extracted standard memory fields from prmon json
[2026-03-07 02:31:54] 2026-03-07 00:31:02,134 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-07 02:31:54] 2026-03-07 00:31:02,134 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-07 02:31:54] 2026-03-07 00:31:02,134 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-07 02:31:54] 2026-03-07 00:31:02,135 | INFO     | fitting pss+swap vs Time
[2026-03-07 02:31:54] 2026-03-07 00:31:02,135 | INFO     | sum of square deviations: 51573060.0
[2026-03-07 02:31:54] 2026-03-07 00:31:02,135 | INFO     | sum of deviations: -6827852488.0
[2026-03-07 02:31:54] 2026-03-07 00:31:02,135 | INFO     | mean x: 1772841631.0
[2026-03-07 02:31:54] 2026-03-07 00:31:02,135 | INFO     | mean y: 2694743.7818181817
[2026-03-07 02:31:54] 2026-03-07 00:31:02,135 | INFO     | intersect: 234712466493.8647
[2026-03-07 02:31:54] 2026-03-07 00:31:02,135 | INFO     | chi2: 0.12571573243287334
[2026-03-07 02:31:54] 2026-03-07 00:31:02,135 | INFO     | current memory leak: -132.39 B/s (using 55 data points, chi2=0.13)
[2026-03-07 02:31:54] 2026-03-07 00:31:02,136 | INFO     | could have reported an average CPU frequency of 3311 MHz (6 samples)
[2026-03-07 02:31:54] 2026-03-07 00:31:02,136 | INFO     | ..............................
[2026-03-07 02:31:54] 2026-03-07 00:31:02,136 | INFO     | . Timing measurements:
[2026-03-07 02:31:54] 2026-03-07 00:31:02,136 | INFO     | . get job = 0 s
[2026-03-07 02:31:54] 2026-03-07 00:31:02,136 | INFO     | . initial setup = 3 s
[2026-03-07 02:31:54] 2026-03-07 00:31:02,136 | INFO     | . payload setup = 2 s
[2026-03-07 02:31:54] 2026-03-07 00:31:02,136 | INFO     | . stage-in = 0 s
[2026-03-07 02:31:54] 2026-03-07 00:31:02,136 | INFO     | . payload execution = 3777 s
[2026-03-07 02:31:54] 2026-03-07 00:31:02,136 | INFO     | . stage-out = 0 s
[2026-03-07 02:31:54] 2026-03-07 00:31:02,136 | INFO     | . log creation = 0 s
[2026-03-07 02:31:54] 2026-03-07 00:31:02,136 | INFO     | ..............................
[2026-03-07 02:31:54] 2026-03-07 00:31:02,163 | INFO     | 
[2026-03-07 02:31:54] 2026-03-07 00:31:02,163 | INFO     | job summary report
[2026-03-07 02:31:54] 2026-03-07 00:31:02,163 | INFO     | --------------------------------------------------
[2026-03-07 02:31:54] 2026-03-07 00:31:02,163 | INFO     | PanDA job id: 7040398994
[2026-03-07 02:31:54] 2026-03-07 00:31:02,163 | INFO     | task id: 48973452
[2026-03-07 02:31:54] 2026-03-07 00:31:02,163 | INFO     | errors: (none)
[2026-03-07 02:31:54] 2026-03-07 00:31:02,163 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 02:31:54] 2026-03-07 00:31:02,163 | INFO     | pilot state: finished 
[2026-03-07 02:31:54] 2026-03-07 00:31:02,163 | INFO     | transexitcode: 0
[2026-03-07 02:31:54] 2026-03-07 00:31:02,163 | INFO     | exeerrorcode: 0
[2026-03-07 02:31:54] 2026-03-07 00:31:02,163 | INFO     | exeerrordiag: 
[2026-03-07 02:31:54] 2026-03-07 00:31:02,163 | INFO     | exitcode: 0
[2026-03-07 02:31:54] 2026-03-07 00:31:02,163 | INFO     | exitmsg: OK
[2026-03-07 02:31:54] 2026-03-07 00:31:02,163 | INFO     | cpuconsumptiontime: 14447 s
[2026-03-07 02:31:54] 2026-03-07 00:31:02,163 | INFO     | nevents: 400
[2026-03-07 02:31:54] 2026-03-07 00:31:02,163 | INFO     | neventsw: 0
[2026-03-07 02:31:54] 2026-03-07 00:31:02,163 | INFO     | pid: 1808318
[2026-03-07 02:31:54] 2026-03-07 00:31:02,163 | INFO     | pgrp: 1808318
[2026-03-07 02:31:54] 2026-03-07 00:31:02,163 | INFO     | corecount: 4
[2026-03-07 02:31:54] 2026-03-07 00:31:02,164 | INFO     | event service: False
[2026-03-07 02:31:54] 2026-03-07 00:31:02,164 | INFO     | sizes: {0: 2295842, 10: 2295842, 3783: 2321787, 3785: 2330785, 3787: 2330841, 3788: 2331035}
[2026-03-07 02:31:54] 2026-03-07 00:31:02,164 | INFO     | --------------------------------------------------
[2026-03-07 02:31:54] 2026-03-07 00:31:02,164 | INFO     | 
[2026-03-07 02:31:54] 2026-03-07 00:31:02,164 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/0
[2026-03-07 02:31:54] 2026-03-07 00:31:02,172 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 02:31:54] 2026-03-07 00:31:02,172 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 02:31:54] 2026-03-07 00:31:02,172 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 02:31:54] 2026-03-07 00:31:02,172 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 02:31:54] 2026-03-07 00:31:02,172 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 02:31:54] 2026-03-07 00:31:02,172 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 02:31:54] 2026-03-07 00:31:02,172 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 02:31:54] 2026-03-07 00:31:02,172 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 02:31:54] 2026-03-07 00:31:02,172 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 02:31:54] 2026-03-07 00:31:02,172 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 02:31:54] 2026-03-07 00:31:02,172 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 02:31:54] 2026-03-07 00:31:02,172 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 02:31:54] 2026-03-07 00:31:02,172 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 02:31:54] 2026-03-07 00:31:02,172 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 02:31:54] 2026-03-07 00:31:02,172 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 02:31:54] 2026-03-07 00:31:02,172 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 02:31:54] 2026-03-07 00:31:02,172 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 02:31:54] 2026-03-07 00:31:02,172 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 02:31:54] 2026-03-07 00:31:02,173 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 02:31:54] 2026-03-07 00:31:02,173 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 02:31:54] 2026-03-07 00:31:02,173 | INFO     | job 7040398994 has completed (purged errors)
[2026-03-07 02:31:54] 2026-03-07 00:31:02,173 | INFO     | overall cleanup function is called
[2026-03-07 02:31:54] 2026-03-07 00:31:02,250 | INFO     | number of running child processes to parent process 1808318: 1
[2026-03-07 02:31:54] 2026-03-07 00:31:02,250 | INFO     | maximum number of monitored processes: 6
[2026-03-07 02:31:54] 2026-03-07 00:31:02,250 | INFO     | aborting job monitoring since job object (job id=7040398994) has expired
[2026-03-07 02:31:54] 2026-03-07 00:31:03,180 | INFO     | --- collectZombieJob: --- 10, [1808318]
[2026-03-07 02:31:54] 2026-03-07 00:31:03,180 | INFO     | zombie collector waiting for pid 1808318
[2026-03-07 02:31:54] 2026-03-07 00:31:03,180 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 02:31:54] 2026-03-07 00:31:03,180 | INFO     | collected zombie processes
[2026-03-07 02:31:54] 2026-03-07 00:31:03,180 | INFO     | will attempt to kill all subprocesses of pid=1808318
[2026-03-07 02:31:54] 2026-03-07 00:31:03,271 | INFO     | process IDs to be killed: [1808318] (in reverse order)
[2026-03-07 02:31:54] 2026-03-07 00:31:03,302 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 02:31:54] 2026-03-07 00:31:03,303 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 02:31:54] 2026-03-07 00:31:03,306 | INFO     | did not find any defunct processes belonging to 1808318
[2026-03-07 02:31:54] 2026-03-07 00:31:03,309 | INFO     | did not find any defunct processes belonging to 1808318
[2026-03-07 02:31:54] 2026-03-07 00:31:03,309 | INFO     | ready for new job
[2026-03-07 02:31:54] 2026-03-07 00:31:03,309 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 02:31:54] 2026-03-07 00:31:03,310 | INFO     | **************************************
[2026-03-07 02:31:54] 2026-03-07 00:31:03,310 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 02:31:54] 2026-03-07 00:31:03,310 | INFO     | **************************************
[2026-03-07 02:31:54] 2026-03-07 00:31:03,310 | INFO     | 
[2026-03-07 02:31:54] 2026-03-07 00:31:03,311 | INFO     | architecture information:
[2026-03-07 02:31:54] 2026-03-07 00:31:03,311 | INFO     | executing command: cat /etc/os-release
[2026-03-07 02:31:54] 2026-03-07 00:31:03,316 | INFO     | cat /etc/os-release:
[2026-03-07 02:31:54] NAME="CentOS Linux"
[2026-03-07 02:31:54] VERSION="7 (Core)"
[2026-03-07 02:31:54] ID="centos"
[2026-03-07 02:31:54] ID_LIKE="rhel fedora"
[2026-03-07 02:31:54] VERSION_ID="7"
[2026-03-07 02:31:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 02:31:54] ANSI_COLOR="0;31"
[2026-03-07 02:31:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 02:31:54] HOME_URL="https://www.centos.org/"
[2026-03-07 02:31:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 02:31:54] 
[2026-03-07 02:31:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 02:31:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 02:31:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 02:31:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 02:31:54] 
[2026-03-07 02:31:54] 2026-03-07 00:31:03,317 | INFO     | **************************************
[2026-03-07 02:31:54] 2026-03-07 00:31:03,819 | INFO     | executing command: df -mP /home/ek/BOINC/slots/0
[2026-03-07 02:31:54] 2026-03-07 00:31:03,825 | INFO     | sufficient remaining disk space (57185140736 B)
[2026-03-07 02:31:54] 2026-03-07 00:31:03,825 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 02:31:54] 2026-03-07 00:31:03,825 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 02:31:54] 2026-03-07 00:31:03,825 | INFO     | update_server=False
[2026-03-07 02:31:54] 2026-03-07 00:31:03,825 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 02:31:54] 2026-03-07 00:31:03,825 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 02:31:54] 2026-03-07 00:31:03,826 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 02:31:54] 2026-03-07 00:31:03,826 | INFO     | aborting loop
[2026-03-07 02:31:54] 2026-03-07 00:31:04,071 | INFO     | all data control threads have been joined
[2026-03-07 02:31:54] 2026-03-07 00:31:04,234 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 02:31:54] 2026-03-07 00:31:04,329 | INFO     | all job control threads have been joined
[2026-03-07 02:31:54] 2026-03-07 00:31:04,830 | INFO     | [job] job monitor thread has finished
[2026-03-07 02:31:54] 2026-03-07 00:31:04,830 | INFO     | [job] queue monitor thread has finished
[2026-03-07 02:31:54] 2026-03-07 00:31:04,831 | INFO     | [job] retrieve thread has finished
[2026-03-07 02:31:54] 2026-03-07 00:31:04,872 | INFO     | all payload control threads have been joined
[2026-03-07 02:31:54] 2026-03-07 00:31:04,985 | INFO     | [payload] validate_post thread has finished
[2026-03-07 02:31:54] 2026-03-07 00:31:05,076 | INFO     | [data] control thread has finished
[2026-03-07 02:31:54] 2026-03-07 00:31:05,334 | INFO     | [job] control thread has finished
[2026-03-07 02:31:54] 2026-03-07 00:31:05,586 | INFO     | [job] validate thread has finished
[2026-03-07 02:31:54] 2026-03-07 00:31:05,750 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 02:31:54] 2026-03-07 00:31:05,877 | INFO     | [payload] control thread has finished
[2026-03-07 02:31:54] 2026-03-07 00:31:05,951 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 02:31:54] 2026-03-07 00:31:06,028 | INFO     | [data] copytool_in thread has finished
[2026-03-07 02:31:54] 2026-03-07 00:31:06,038 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 02:31:54] 2026-03-07 00:31:06,239 | INFO     | [data] copytool_out thread has finished
[2026-03-07 02:31:54] 2026-03-07 00:31:06,241 | INFO     | [payload] failed_post thread has finished
[2026-03-07 02:31:54] 2026-03-07 00:31:07,319 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 02:31:54] 2026-03-07 00:31:11,325 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 02:31:54] 2026-03-07 00:31:13,962 | INFO     | job.realtimelogging is not enabled
[2026-03-07 02:31:54] 2026-03-07 00:31:14,967 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 02:31:54] 2026-03-07 00:31:33,702 | INFO     | PID=1803504 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-07 02:31:54] 2026-03-07 00:31:33,703 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 02:31:54] 2026-03-07 00:31:33,703 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 02:31:54] 2026-03-07 00:31:33,703 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 02:31:54] 2026-03-07 00:31:48,146 | INFO     | [monitor] cgroup control has ended
[2026-03-07 02:31:54] 2026-03-07 00:31:49,711 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139759057090368)>', '<ExcThread(monitor, started 139758437136128)>']
[2026-03-07 02:31:54] 2026-03-07 00:31:49,764 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 02:31:54] 2026-03-07 00:31:49,764 | INFO     | [monitor] control thread has ended
[2026-03-07 02:31:54] 2026-03-07 00:31:54,737 | INFO     | all workflow threads have been joined
[2026-03-07 02:31:54] 2026-03-07 00:31:54,737 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 02:31:54] 2026-03-07 00:31:54,737 | INFO     | traces error code: 0
[2026-03-07 02:31:54] 2026-03-07 00:31:54,737 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 02:31:54] 2026-03-07 00:31:54,777 [wrapper] ==== pilot stdout END ====
[2026-03-07 02:31:54] 2026-03-07 00:31:54,779 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 02:31:54] 2026-03-07 00:31:54,780 [wrapper] pilotpid: 1803504
[2026-03-07 02:31:54] 2026-03-07 00:31:54,781 [wrapper] Pilot exit status: 0
[2026-03-07 02:31:54] 2026-03-07 00:31:54,786 [wrapper] pandaids: 7040398994
[2026-03-07 02:31:54] 2026-03-07 00:31:54,808 [wrapper] cleanup supervisor_pilot 1852560 1803505
[2026-03-07 02:31:54] 2026-03-07 00:31:54,809 [wrapper] Test setup, not cleaning
[2026-03-07 02:31:54] 2026-03-07 00:31:54,810 [wrapper] apfmon messages muted
[2026-03-07 02:31:54] 2026-03-07 00:31:54,812 [wrapper] ==== wrapper stdout END ====
[2026-03-07 02:31:54] 2026-03-07 00:31:54,813 [wrapper] ==== wrapper stderr END ====
[2026-03-07 02:31:54]  *** Error codes and diagnostics ***
[2026-03-07 02:31:54]     "exeErrorCode": 0,
[2026-03-07 02:31:54]     "exeErrorDiag": "",
[2026-03-07 02:31:54]     "pilotErrorCode": 0,
[2026-03-07 02:31:54]     "pilotErrorDiag": "",
[2026-03-07 02:31:54]  *** Listing of results directory ***
[2026-03-07 02:31:54] total 507872
[2026-03-07 02:31:54] -rw-r--r-- 1 ek ek    584627 Mar  4 19:22 pilot3.tar.gz
[2026-03-07 02:31:54] -rw-r--r-- 1 ek ek      5111 Mar  4 19:46 queuedata.json
[2026-03-07 02:31:54] -rwx------ 1 ek ek     36322 Mar  4 19:47 runpilot2-wrapper.sh
[2026-03-07 02:31:54] -rw-rw-r-- 1 ek ek       100 Mar  7 01:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 02:31:54] -rwxr-xr-x 1 ek ek      7986 Mar  7 01:27 run_atlas
[2026-03-07 02:31:54] -rw-rw-r-- 1 ek ek       105 Mar  7 01:27 job.xml
[2026-03-07 02:31:54] -rw-r--r-- 2 ek ek 298397330 Mar  7 01:27 EVNT.48717224._000026.pool.root.1
[2026-03-07 02:31:54] drwxrwx--x 2 ek ek      4096 Mar  7 01:27 shared
[2026-03-07 02:31:54] -rw-r--r-- 2 ek ek    597952 Mar  7 01:27 input.tar.gz
[2026-03-07 02:31:54] -rw-r--r-- 2 ek ek     15845 Mar  7 01:27 start_atlas.sh
[2026-03-07 02:31:54] -rw-rw-r-- 1 ek ek         0 Mar  7 01:27 boinc_setup_complete
[2026-03-07 02:31:54] -rw-rw-r-- 1 ek ek      9840 Mar  7 01:27 init_data.xml
[2026-03-07 02:31:54] -rw-rw-r-- 1 ek ek         0 Mar  7 01:27 boinc_lockfile
[2026-03-07 02:31:54] -rw-rw-r-- 1 ek ek      2593 Mar  7 01:27 pandaJob.out
[2026-03-07 02:31:54] -rw------- 1 ek ek        50 Mar  7 01:27 setup.sh.local
[2026-03-07 02:31:54] -rw------- 1 ek ek    999504 Mar  7 01:27 agis_schedconf.cvmfs.json
[2026-03-07 02:31:54] -rw------- 1 ek ek   1521291 Mar  7 01:27 agis_ddmendpoints.agis.ALL.json
[2026-03-07 02:31:54] -rw------- 1 ek ek       432 Mar  7 01:27 workernode_map.json
[2026-03-07 02:31:54] drwx------ 5 ek ek      4096 Mar  7 01:27 pilot3
[2026-03-07 02:31:54] -rw-rw-r-- 1 ek ek       529 Mar  7 02:30 boinc_task_state.xml
[2026-03-07 02:31:54] -rw------- 1 ek ek 216050747 Mar  7 02:30 HITS.48973452._000647.pool.root.1
[2026-03-07 02:31:54] -rw------- 1 ek ek      1054 Mar  7 02:30 memory_monitor_summary.json
[2026-03-07 02:31:54] -rw------- 1 ek ek    265530 Mar  7 02:30 log.48973452._000647.job.log.tgz.1
[2026-03-07 02:31:54] -rw------- 1 ek ek      6346 Mar  7 02:31 heartbeat.json
[2026-03-07 02:31:54] -rw------- 1 ek ek        95 Mar  7 02:31 pilot_heartbeat.json
[2026-03-07 02:31:54] -rw-rw-r-- 1 ek ek      8192 Mar  7 02:31 boinc_mmap_file
[2026-03-07 02:31:54] -rw-rw-r-- 1 ek ek        27 Mar  7 02:31 wrapper_checkpoint.txt
[2026-03-07 02:31:54] -rw------- 1 ek ek      4816 Mar  7 02:31 pilotlog.txt
[2026-03-07 02:31:54] -rw------- 1 ek ek    568202 Mar  7 02:31 log.48973452._000647.job.log.1
[2026-03-07 02:31:54] -rw------- 1 ek ek       357 Mar  7 02:31 output.list
[2026-03-07 02:31:54] -rw-rw-r-- 1 ek ek       620 Mar  7 02:31 runtime_log
[2026-03-07 02:31:54] -rw------- 1 ek ek    849920 Mar  7 02:31 result.tar.gz
[2026-03-07 02:31:54] -rw-rw-r-- 1 ek ek      9501 Mar  7 02:31 runtime_log.err
[2026-03-07 02:31:54] -rw------- 1 ek ek       663 Mar  7 02:31 DOpMDmdU5H9n9Rq4apOajLDm4fhM0noT9bVooX4SDmAEJLDmJmdylm.diag
[2026-03-07 02:31:54] -rw-rw-r-- 1 ek ek     21237 Mar  7 02:31 stderr.txt
[2026-03-07 02:31:54] HITS file was successfully produced:
[2026-03-07 02:31:54] -rw------- 1 ek ek 216050747 Mar  7 02:30 shared/HITS.pool.root.1
[2026-03-07 02:31:54]  *** Contents of shared directory: ***
[2026-03-07 02:31:54] total 503832
[2026-03-07 02:31:54] -rw-r--r-- 2 ek ek 298397330 Mar  7 01:27 ATLAS.root_0
[2026-03-07 02:31:54] -rw-r--r-- 2 ek ek    597952 Mar  7 01:27 input.tar.gz
[2026-03-07 02:31:54] -rw-r--r-- 2 ek ek     15845 Mar  7 01:27 start_atlas.sh
[2026-03-07 02:31:54] -rw------- 1 ek ek 216050747 Mar  7 02:30 HITS.pool.root.1
[2026-03-07 02:31:54] -rw------- 1 ek ek    849920 Mar  7 02:31 result.tar.gz
02:31:56 (1799659): run_atlas exited; CPU time 14477.171438
02:31:56 (1799659): called boinc_finish(0)

</stderr_txt>
]]>

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