Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:20:25 (1966469): wrapper (7.7.26015): starting
04:20:25 (1966469): wrapper: running run_atlas (--nthreads 4)
[2026-03-06 04:20:25] Arguments: --nthreads 4
[2026-03-06 04:20:25] Threads: 4
[2026-03-06 04:20:25] Checking for CVMFS
[2026-03-06 04:20:25] No cvmfs_config command found, will try listing directly
[2026-03-06 04:20:25] CVMFS is ok
[2026-03-06 04:20:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-06 04:20:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-06 04:20:25] Further information can be found at the LHC@home message board.
[2026-03-06 04:20:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-06 04:20:25] Checking for apptainer binary...
[2026-03-06 04:20:25] which: no apptainer in ((null))
[2026-03-06 04:20:25] apptainer is not installed, using version from CVMFS
[2026-03-06 04:20:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-06 04:20:25] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot96/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2026-03-06 04:20:25] apptainer works
[2026-03-06 04:20:25] Set ATHENA_PROC_NUMBER=4
[2026-03-06 04:20:25] Set ATHENA_CORE_NUMBER=4
[2026-03-06 04:20:25] Starting ATLAS job with PandaID=7038568204
[2026-03-06 04:20:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot96/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-06 07:00:15]  *** The last 200 lines of the pilot log: ***
[2026-03-06 07:00:15] 2026-03-06 05:59:05,321 | INFO     | reading metadata from: /var/lib/boinc/var/slot96/slots/0/PanDA_Pilot-7038568204/jobReport.json
[2026-03-06 07:00:15] 2026-03-06 05:59:05,323 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot96/slots/0/workernode_map.json
[2026-03-06 07:00:15] 2026-03-06 05:59:05,324 | INFO     | this job has now completed (state=finished)
[2026-03-06 07:00:15] 2026-03-06 05:59:05,324 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-06 07:00:15] 2026-03-06 05:59:05,324 | INFO     | log transfer has been attempted: DONE
[2026-03-06 07:00:15] 2026-03-06 05:59:05,324 | INFO     | job 7038568204 has finished - writing final server update
[2026-03-06 07:00:15] 2026-03-06 05:59:05,324 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_19238/.job.ad'
[2026-03-06 07:00:15] 2026-03-06 05:59:05,324 | INFO     | total number of processed events: 400 (read)
[2026-03-06 07:00:15] 2026-03-06 05:59:05,328 | INFO     | time since job start (9492s) is within the limit (349056.0s)
[2026-03-06 07:00:15] 2026-03-06 05:59:05,351 | INFO     | using path: /var/lib/boinc/var/slot96/slots/0/PanDA_Pilot-7038568204/memory_monitor_summary.json (trf name=prmon)
[2026-03-06 07:00:15] 2026-03-06 05:59:05,352 | INFO     | extracted standard info from prmon json
[2026-03-06 07:00:15] 2026-03-06 05:59:05,352 | INFO     | extracted standard memory fields from prmon json
[2026-03-06 07:00:15] 2026-03-06 05:59:05,352 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-06 07:00:15] 2026-03-06 05:59:05,352 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-06 07:00:15] 2026-03-06 05:59:05,352 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-06 07:00:15] 2026-03-06 05:59:05,355 | INFO     | fitting pss+swap vs Time
[2026-03-06 07:00:15] 2026-03-06 05:59:05,356 | INFO     | sum of square deviations: 1154663510.0
[2026-03-06 07:00:15] 2026-03-06 05:59:05,357 | INFO     | sum of deviations: 12405032468.0
[2026-03-06 07:00:15] 2026-03-06 05:59:05,357 | INFO     | mean x: 1772771983.0
[2026-03-06 07:00:15] 2026-03-06 05:59:05,357 | INFO     | mean y: 2316752.8903225805
[2026-03-06 07:00:15] 2026-03-06 05:59:05,357 | INFO     | intersect: -19043313265.74233
[2026-03-06 07:00:15] 2026-03-06 05:59:05,357 | INFO     | chi2: 1.2969232520885066
[2026-03-06 07:00:15] 2026-03-06 05:59:05,358 | INFO     | sum of square deviations: 1046484737.5
[2026-03-06 07:00:15] 2026-03-06 05:59:05,359 | INFO     | sum of deviations: 11992792363.500002
[2026-03-06 07:00:15] 2026-03-06 05:59:05,359 | INFO     | mean x: 1772771830.5
[2026-03-06 07:00:15] 2026-03-06 05:59:05,359 | INFO     | mean y: 2316171.553333333
[2026-03-06 07:00:15] 2026-03-06 05:59:05,359 | INFO     | intersect: -20313779906.291584
[2026-03-06 07:00:15] 2026-03-06 05:59:05,359 | INFO     | chi2: 1.2982092939612637
[2026-03-06 07:00:15] 2026-03-06 05:59:05,359 | INFO     | current chi2=1.2982092939612637 (change=-0.09916098509963302 %)
[2026-03-06 07:00:15] 2026-03-06 05:59:05,359 | INFO     | right removable region: 149
[2026-03-06 07:00:15] 2026-03-06 05:59:05,360 | INFO     | sum of square deviations: 1046484737.5
[2026-03-06 07:00:15] 2026-03-06 05:59:05,361 | INFO     | sum of deviations: -6193318776.000001
[2026-03-06 07:00:15] 2026-03-06 05:59:05,361 | INFO     | mean x: 1772772135.5
[2026-03-06 07:00:15] 2026-03-06 05:59:05,361 | INFO     | mean y: 2342496.013333333
[2026-03-06 07:00:15] 2026-03-06 05:59:05,361 | INFO     | intersect: 10493984236.141214
[2026-03-06 07:00:15] 2026-03-06 05:59:05,361 | INFO     | chi2: 0.009305575266643044
[2026-03-06 07:00:15] 2026-03-06 05:59:05,361 | INFO     | current chi2=0.009305575266643044 (change=99.28248836223285 %)
[2026-03-06 07:00:15] 2026-03-06 05:59:05,362 | INFO     | sum of square deviations: 945282840.0
[2026-03-06 07:00:15] 2026-03-06 05:59:05,362 | INFO     | sum of deviations: -4828179768.0
[2026-03-06 07:00:15] 2026-03-06 05:59:05,362 | INFO     | mean x: 1772772288.0
[2026-03-06 07:00:15] 2026-03-06 05:59:05,363 | INFO     | mean y: 2340452.4482758623
[2026-03-06 07:00:15] 2026-03-06 05:59:05,363 | INFO     | intersect: 9057051838.294092
[2026-03-06 07:00:15] 2026-03-06 05:59:05,363 | INFO     | chi2: 0.007274368867049519
[2026-03-06 07:00:15] 2026-03-06 05:59:05,363 | INFO     | current chi2=0.007274368867049519 (change=21.82784343139569 %)
[2026-03-06 07:00:15] 2026-03-06 05:59:05,363 | INFO     | left removable region: 20
[2026-03-06 07:00:15] 2026-03-06 05:59:05,363 | INFO     | sum of square deviations: 665612480.0
[2026-03-06 07:00:15] 2026-03-06 05:59:05,364 | INFO     | sum of deviations: -2761833072.0
[2026-03-06 07:00:15] 2026-03-06 05:59:05,364 | INFO     | mean x: 1772772410.0
[2026-03-06 07:00:15] 2026-03-06 05:59:05,364 | INFO     | mean y: 2337271.96124031
[2026-03-06 07:00:15] 2026-03-06 05:59:05,364 | INFO     | intersect: 7358121032.306515
[2026-03-06 07:00:15] 2026-03-06 05:59:05,365 | INFO     | chi2: 0.005565493107299822
[2026-03-06 07:00:15] 2026-03-06 05:59:05,365 | INFO     | current memory leak: -4.15 B/s (using 129 data points, chi2=0.01)
[2026-03-06 07:00:15] 2026-03-06 05:59:05,365 | INFO     | could have reported an average CPU frequency of 2703 MHz (9 samples)
[2026-03-06 07:00:15] 2026-03-06 05:59:05,365 | INFO     | ..............................
[2026-03-06 07:00:15] 2026-03-06 05:59:05,365 | INFO     | . Timing measurements:
[2026-03-06 07:00:15] 2026-03-06 05:59:05,366 | INFO     | . get job = 0 s
[2026-03-06 07:00:15] 2026-03-06 05:59:05,366 | INFO     | . initial setup = 11 s
[2026-03-06 07:00:15] 2026-03-06 05:59:05,366 | INFO     | . payload setup = 11 s
[2026-03-06 07:00:15] 2026-03-06 05:59:05,366 | INFO     | . stage-in = 0 s
[2026-03-06 07:00:15] 2026-03-06 05:59:05,366 | INFO     | . payload execution = 9457 s
[2026-03-06 07:00:15] 2026-03-06 05:59:05,366 | INFO     | . stage-out = 0 s
[2026-03-06 07:00:15] 2026-03-06 05:59:05,366 | INFO     | . log creation = 0 s
[2026-03-06 07:00:15] 2026-03-06 05:59:05,366 | INFO     | ..............................
[2026-03-06 07:00:15] 2026-03-06 05:59:05,463 | INFO     | 
[2026-03-06 07:00:15] 2026-03-06 05:59:05,464 | INFO     | job summary report
[2026-03-06 07:00:15] 2026-03-06 05:59:05,464 | INFO     | --------------------------------------------------
[2026-03-06 07:00:15] 2026-03-06 05:59:05,464 | INFO     | PanDA job id: 7038568204
[2026-03-06 07:00:15] 2026-03-06 05:59:05,464 | INFO     | task id: 48955006
[2026-03-06 07:00:15] 2026-03-06 05:59:05,464 | INFO     | errors: (none)
[2026-03-06 07:00:15] 2026-03-06 05:59:05,464 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-06 07:00:15] 2026-03-06 05:59:05,464 | INFO     | pilot state: finished 
[2026-03-06 07:00:15] 2026-03-06 05:59:05,464 | INFO     | transexitcode: 0
[2026-03-06 07:00:15] 2026-03-06 05:59:05,464 | INFO     | exeerrorcode: 0
[2026-03-06 07:00:15] 2026-03-06 05:59:05,464 | INFO     | exeerrordiag: 
[2026-03-06 07:00:15] 2026-03-06 05:59:05,464 | INFO     | exitcode: 0
[2026-03-06 07:00:15] 2026-03-06 05:59:05,464 | INFO     | exitmsg: OK
[2026-03-06 07:00:15] 2026-03-06 05:59:05,465 | INFO     | cpuconsumptiontime: 36218 s
[2026-03-06 07:00:15] 2026-03-06 05:59:05,465 | INFO     | nevents: 400
[2026-03-06 07:00:15] 2026-03-06 05:59:05,465 | INFO     | neventsw: 0
[2026-03-06 07:00:15] 2026-03-06 05:59:05,465 | INFO     | pid: 1976353
[2026-03-06 07:00:15] 2026-03-06 05:59:05,465 | INFO     | pgrp: 1976353
[2026-03-06 07:00:15] 2026-03-06 05:59:05,465 | INFO     | corecount: 4
[2026-03-06 07:00:15] 2026-03-06 05:59:05,465 | INFO     | event service: False
[2026-03-06 07:00:15] 2026-03-06 05:59:05,465 | INFO     | sizes: {0: 2295606, 1: 2295840, 11: 2295840, 9473: 2324518, 9474: 2333538, 9478: 2333594, 9480: 2333980}
[2026-03-06 07:00:15] 2026-03-06 05:59:05,465 | INFO     | --------------------------------------------------
[2026-03-06 07:00:15] 2026-03-06 05:59:05,465 | INFO     | 
[2026-03-06 07:00:15] 2026-03-06 05:59:05,465 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot96/slots/0
[2026-03-06 07:00:15] 2026-03-06 05:59:05,500 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-06 07:00:15] 2026-03-06 05:59:05,501 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-06 07:00:15] 2026-03-06 05:59:05,501 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-06 07:00:15] 2026-03-06 05:59:05,501 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-06 07:00:15] 2026-03-06 05:59:05,501 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-06 07:00:15] 2026-03-06 05:59:05,501 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-06 07:00:15] 2026-03-06 05:59:05,501 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-06 07:00:15] 2026-03-06 05:59:05,501 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-06 07:00:15] 2026-03-06 05:59:05,501 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-06 07:00:15] 2026-03-06 05:59:05,501 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-06 07:00:15] 2026-03-06 05:59:05,502 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-06 07:00:15] 2026-03-06 05:59:05,502 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-06 07:00:15] 2026-03-06 05:59:05,502 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-06 07:00:15] 2026-03-06 05:59:05,502 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-06 07:00:15] 2026-03-06 05:59:05,502 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-06 07:00:15] 2026-03-06 05:59:05,502 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-06 07:00:15] 2026-03-06 05:59:05,502 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-06 07:00:15] 2026-03-06 05:59:05,502 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-06 07:00:15] 2026-03-06 05:59:05,502 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-06 07:00:15] 2026-03-06 05:59:05,502 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-06 07:00:15] 2026-03-06 05:59:05,503 | INFO     | job 7038568204 has completed (purged errors)
[2026-03-06 07:00:15] 2026-03-06 05:59:05,503 | INFO     | overall cleanup function is called
[2026-03-06 07:00:15] 2026-03-06 05:59:06,513 | INFO     | --- collectZombieJob: --- 10, [1976353]
[2026-03-06 07:00:15] 2026-03-06 05:59:06,515 | INFO     | zombie collector waiting for pid 1976353
[2026-03-06 07:00:15] 2026-03-06 05:59:06,515 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-06 07:00:15] 2026-03-06 05:59:06,516 | INFO     | collected zombie processes
[2026-03-06 07:00:15] 2026-03-06 05:59:06,516 | INFO     | will attempt to kill all subprocesses of pid=1976353
[2026-03-06 07:00:15] 2026-03-06 05:59:08,365 | INFO     | PID=1970619 has CPU usage=20.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-06 07:00:15] 2026-03-06 05:59:08,365 | INFO     | .. there are 25 such processes running
[2026-03-06 07:00:15] 2026-03-06 05:59:08,466 | INFO     | process IDs to be killed: [1976353] (in reverse order)
[2026-03-06 07:00:15] 2026-03-06 05:59:08,864 | WARNING  | found no corresponding commands to process id(s)
[2026-03-06 07:00:15] 2026-03-06 05:59:08,865 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-06 07:00:15] 2026-03-06 05:59:08,896 | INFO     | did not find any defunct processes belonging to 1976353
[2026-03-06 07:00:15] 2026-03-06 05:59:08,928 | INFO     | did not find any defunct processes belonging to 1976353
[2026-03-06 07:00:15] 2026-03-06 05:59:08,929 | INFO     | ready for new job
[2026-03-06 07:00:15] 2026-03-06 05:59:08,929 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-06 07:00:15] 2026-03-06 05:59:08,931 | INFO     | **************************************
[2026-03-06 07:00:15] 2026-03-06 05:59:08,931 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-06 07:00:15] 2026-03-06 05:59:08,931 | INFO     | **************************************
[2026-03-06 07:00:15] 2026-03-06 05:59:08,931 | INFO     | 
[2026-03-06 07:00:15] 2026-03-06 05:59:08,940 | INFO     | architecture information:
[2026-03-06 07:00:15] 2026-03-06 05:59:08,944 | INFO     | executing command: cat /etc/os-release
[2026-03-06 07:00:15] 2026-03-06 05:59:08,994 | INFO     | cat /etc/os-release:
[2026-03-06 07:00:15] NAME="CentOS Linux"
[2026-03-06 07:00:15] VERSION="7 (Core)"
[2026-03-06 07:00:15] ID="centos"
[2026-03-06 07:00:15] ID_LIKE="rhel fedora"
[2026-03-06 07:00:15] VERSION_ID="7"
[2026-03-06 07:00:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-06 07:00:15] ANSI_COLOR="0;31"
[2026-03-06 07:00:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-06 07:00:15] HOME_URL="https://www.centos.org/"
[2026-03-06 07:00:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-06 07:00:15] 
[2026-03-06 07:00:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-06 07:00:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-06 07:00:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-06 07:00:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-06 07:00:15] 
[2026-03-06 07:00:15] 2026-03-06 05:59:08,994 | INFO     | **************************************
[2026-03-06 07:00:15] 2026-03-06 05:59:09,497 | INFO     | executing command: df -mP /var/lib/boinc/var/slot96/slots/0
[2026-03-06 07:00:15] 2026-03-06 05:59:09,521 | INFO     | sufficient remaining disk space (182606364672 B)
[2026-03-06 07:00:15] 2026-03-06 05:59:09,521 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-06 07:00:15] 2026-03-06 05:59:09,521 | INFO     | current server update state: UPDATING_FINAL
[2026-03-06 07:00:15] 2026-03-06 05:59:09,521 | INFO     | update_server=False
[2026-03-06 07:00:15] 2026-03-06 05:59:09,521 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-06 07:00:15] 2026-03-06 05:59:09,522 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-06 07:00:15] 2026-03-06 05:59:09,528 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-06 07:00:15] 2026-03-06 05:59:09,529 | INFO     | aborting loop
[2026-03-06 07:00:15] 2026-03-06 05:59:09,597 | INFO     | all job control threads have been joined
[2026-03-06 07:00:15] 2026-03-06 05:59:09,870 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-06 07:00:15] 2026-03-06 05:59:10,481 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-06 07:00:15] 2026-03-06 05:59:10,516 | INFO     | all data control threads have been joined
[2026-03-06 07:00:15] 2026-03-06 05:59:10,527 | INFO     | [job] retrieve thread has finished
[2026-03-06 07:00:15] 2026-03-06 05:59:10,534 | INFO     | [job] job monitor thread has finished
[2026-03-06 07:00:15] 2026-03-06 05:59:10,603 | INFO     | [job] control thread has finished
[2026-03-06 07:00:15] 2026-03-06 05:59:10,687 | INFO     | all payload control threads have been joined
[2026-03-06 07:00:15] 2026-03-06 05:59:10,734 | INFO     | [job] create_data_payload thread has finished
[2026-03-06 07:00:15] 2026-03-06 05:59:10,765 | INFO     | [payload] execute_payloads thread has finished
[2026-03-06 07:00:15] 2026-03-06 05:59:10,899 | INFO     | [data] copytool_in thread has finished
[2026-03-06 07:00:15] 2026-03-06 05:59:11,123 | INFO     | [payload] failed_post thread has finished
[2026-03-06 07:00:15] 2026-03-06 05:59:11,487 | INFO     | [job] queue monitor thread has finished
[2026-03-06 07:00:15] 2026-03-06 05:59:11,520 | INFO     | [data] control thread has finished
[2026-03-06 07:00:15] 2026-03-06 05:59:11,671 | INFO     | [payload] validate_post thread has finished
[2026-03-06 07:00:15] 2026-03-06 05:59:11,692 | INFO     | [payload] control thread has finished
[2026-03-06 07:00:15] 2026-03-06 05:59:11,729 | INFO     | [job] validate thread has finished
[2026-03-06 07:00:15] 2026-03-06 05:59:11,751 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-06 07:00:15] 2026-03-06 05:59:11,859 | INFO     | [payload] validate_pre thread has finished
[2026-03-06 07:00:15] 2026-03-06 05:59:11,876 | INFO     | [data] copytool_out thread has finished
[2026-03-06 07:00:15] 2026-03-06 05:59:13,528 | INFO     | [data] queue_monitor thread has finished
[2026-03-06 07:00:15] 2026-03-06 05:59:41,439 | INFO     | PID=1970619 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-06 07:00:15] 2026-03-06 05:59:41,440 | INFO     | .. there are 25 such processes running
[2026-03-06 07:00:15] 2026-03-06 05:59:41,440 | INFO     | found 0 job(s) in 20 queues
[2026-03-06 07:00:15] 2026-03-06 05:59:41,441 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-06 07:00:15] 2026-03-06 05:59:41,441 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-06 07:00:15] 2026-03-06 06:00:09,334 | INFO     | [monitor] cgroup control has ended
[2026-03-06 07:00:15] 2026-03-06 06:00:09,497 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22374065399616)>', '<ExcThread(monitor, started 22373742900992)>']
[2026-03-06 07:00:15] 2026-03-06 06:00:09,573 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-06 07:00:15] 2026-03-06 06:00:09,574 | INFO     | [monitor] control thread has ended
[2026-03-06 07:00:15] 2026-03-06 06:00:14,521 | INFO     | all workflow threads have been joined
[2026-03-06 07:00:15] 2026-03-06 06:00:14,522 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-06 07:00:15] 2026-03-06 06:00:14,522 | INFO     | traces error code: 0
[2026-03-06 07:00:15] 2026-03-06 06:00:14,522 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-06 07:00:15] 2026-03-06 06:00:14,659 [wrapper] ==== pilot stdout END ====
[2026-03-06 07:00:15] 2026-03-06 06:00:14,666 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-06 07:00:15] 2026-03-06 06:00:14,670 [wrapper] pilotpid: 1970619
[2026-03-06 07:00:15] 2026-03-06 06:00:14,674 [wrapper] Pilot exit status: 0
[2026-03-06 07:00:15] 2026-03-06 06:00:14,692 [wrapper] pandaids: 7038568204
[2026-03-06 07:00:15] 2026-03-06 06:00:14,900 [wrapper] cleanup supervisor_pilot 2431756 1970620
[2026-03-06 07:00:15] 2026-03-06 06:00:14,905 [wrapper] Test setup, not cleaning
[2026-03-06 07:00:15] 2026-03-06 06:00:14,911 [wrapper] apfmon messages muted
[2026-03-06 07:00:15] 2026-03-06 06:00:14,914 [wrapper] ==== wrapper stdout END ====
[2026-03-06 07:00:15] 2026-03-06 06:00:14,918 [wrapper] ==== wrapper stderr END ====
[2026-03-06 07:00:15]  *** Error codes and diagnostics ***
[2026-03-06 07:00:15]     "exeErrorCode": 0,
[2026-03-06 07:00:15]     "exeErrorDiag": "",
[2026-03-06 07:00:15]     "pilotErrorCode": 0,
[2026-03-06 07:00:15]     "pilotErrorDiag": "",
[2026-03-06 07:00:15]  *** Listing of results directory ***
[2026-03-06 07:00:15] total 614236
[2026-03-06 07:00:15] -rw-r--r--. 1 boinc boinc    584627 Mar  5 05:31 pilot3.tar.gz
[2026-03-06 07:00:15] -rwx------. 1 boinc boinc     36322 Mar  5 05:32 runpilot2-wrapper.sh
[2026-03-06 07:00:15] -rw-r--r--. 1 boinc boinc      5111 Mar  5 05:33 queuedata.json
[2026-03-06 07:00:15] -rw-r--r--. 1 boinc boinc       100 Mar  6 04:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-06 07:00:15] -rwxr-xr-x. 1 boinc boinc      7986 Mar  6 04:20 run_atlas
[2026-03-06 07:00:15] -rw-r--r--. 1 boinc boinc       105 Mar  6 04:20 job.xml
[2026-03-06 07:00:15] -rw-r--r--. 1 boinc boinc      6616 Mar  6 04:20 init_data.xml
[2026-03-06 07:00:15] -rw-r--r--. 2 boinc boinc 442594238 Mar  6 04:20 EVNT.46701403._000058.pool.root.1
[2026-03-06 07:00:15] -rw-r--r--. 2 boinc boinc     15845 Mar  6 04:20 start_atlas.sh
[2026-03-06 07:00:15] drwxrwx--x. 2 boinc boinc      4096 Mar  6 04:20 shared
[2026-03-06 07:00:15] -rw-r--r--. 2 boinc boinc    597957 Mar  6 04:20 input.tar.gz
[2026-03-06 07:00:15] -rw-r--r--. 1 boinc boinc         0 Mar  6 04:20 boinc_lockfile
[2026-03-06 07:00:15] -rw-r--r--. 1 boinc boinc      2562 Mar  6 04:20 pandaJob.out
[2026-03-06 07:00:15] -rw-------. 1 boinc boinc    998552 Mar  6 04:20 agis_schedconf.cvmfs.json
[2026-03-06 07:00:15] -rw-------. 1 boinc boinc   1521291 Mar  6 04:20 agis_ddmendpoints.agis.ALL.json
[2026-03-06 07:00:15] -rw-------. 1 boinc boinc       440 Mar  6 04:20 workernode_map.json
[2026-03-06 07:00:15] drwx------. 5 boinc boinc      4096 Mar  6 04:20 pilot3
[2026-03-06 07:00:15] -rw-------. 1 boinc boinc 179076790 Mar  6 06:58 HITS.48955006._002897.pool.root.1
[2026-03-06 07:00:15] -rw-r--r--. 1 boinc boinc       530 Mar  6 06:58 boinc_task_state.xml
[2026-03-06 07:00:15] -rw-------. 1 boinc boinc      1030 Mar  6 06:58 memory_monitor_summary.json
[2026-03-06 07:00:15] -rw-------. 1 boinc boinc    370657 Mar  6 06:58 log.48955006._002897.job.log.tgz.1
[2026-03-06 07:00:15] -rw-------. 1 boinc boinc      6354 Mar  6 06:59 heartbeat.json
[2026-03-06 07:00:15] -rw-------. 1 boinc boinc        95 Mar  6 06:59 pilot_heartbeat.json
[2026-03-06 07:00:15] -rw-r--r--. 1 boinc boinc      8192 Mar  6 06:59 boinc_mmap_file
[2026-03-06 07:00:15] -rw-r--r--. 1 boinc boinc        27 Mar  6 06:59 wrapper_checkpoint.txt
[2026-03-06 07:00:15] -rw-------. 1 boinc boinc      4830 Mar  6 07:00 pilotlog.txt
[2026-03-06 07:00:15] -rw-------. 1 boinc boinc   1315122 Mar  6 07:00 log.48955006._002897.job.log.1
[2026-03-06 07:00:15] -rw-------. 1 boinc boinc       357 Mar  6 07:00 output.list
[2026-03-06 07:00:15] -rw-r--r--. 1 boinc boinc       620 Mar  6 07:00 runtime_log
[2026-03-06 07:00:15] -rw-------. 1 boinc boinc   1699840 Mar  6 07:00 result.tar.gz
[2026-03-06 07:00:15] -rw-r--r--. 1 boinc boinc      9204 Mar  6 07:00 runtime_log.err
[2026-03-06 07:00:15] -rw-------. 1 boinc boinc       664 Mar  6 07:00 2zPNDmMZFI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmUoKLDmNiYfvn.diag
[2026-03-06 07:00:15] -rw-r--r--. 1 boinc boinc     21223 Mar  6 07:00 stderr.txt
[2026-03-06 07:00:15] HITS file was successfully produced:
[2026-03-06 07:00:15] -rw-------. 1 boinc boinc 179076790 Mar  6 06:58 shared/HITS.pool.root.1
[2026-03-06 07:00:15]  *** Contents of shared directory: ***
[2026-03-06 07:00:15] total 609372
[2026-03-06 07:00:15] -rw-r--r--. 2 boinc boinc 442594238 Mar  6 04:20 ATLAS.root_0
[2026-03-06 07:00:15] -rw-r--r--. 2 boinc boinc     15845 Mar  6 04:20 start_atlas.sh
[2026-03-06 07:00:15] -rw-r--r--. 2 boinc boinc    597957 Mar  6 04:20 input.tar.gz
[2026-03-06 07:00:15] -rw-------. 1 boinc boinc 179076790 Mar  6 06:58 HITS.pool.root.1
[2026-03-06 07:00:15] -rw-------. 1 boinc boinc   1699840 Mar  6 07:00 result.tar.gz
07:00:16 (1966469): run_atlas exited; CPU time 36800.686569
07:00:16 (1966469): called boinc_finish(0)

</stderr_txt>
]]>

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