Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:35:10 (6688): wrapper (7.7.26015): starting
07:35:10 (6688): wrapper: running run_atlas (--nthreads 12)
[2026-03-05 07:35:10] Arguments: --nthreads 12
[2026-03-05 07:35:10] Threads: 12
[2026-03-05 07:35:10] Checking for CVMFS
[2026-03-05 07:35:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-05 07:35:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-05 07:35:10] Running cvmfs_config stat atlas.cern.ch
[2026-03-05 07:35:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-05 07:35:10] 2.11.2.0 2979 430262 96932 156918 0 188 15684212 20275200 1 130560 1 183004322 99.957 24124146 17499 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-05 07:35:10] CVMFS is ok
[2026-03-05 07:35:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-05 07:35:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-05 07:35:10] Further information can be found at the LHC@home message board.
[2026-03-05 07:35:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 07:35:10] Checking for apptainer binary...
[2026-03-05 07:35:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-05 07:35:10] Running /usr/bin/apptainer --version
[2026-03-05 07:35:10] apptainer version 1.3.2-1.el7
[2026-03-05 07:35:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 07:35:12] c-205-21.aglt2.org
[2026-03-05 07:35:12] apptainer works
[2026-03-05 07:35:12] Set ATHENA_PROC_NUMBER=12
[2026-03-05 07:35:12] Set ATHENA_CORE_NUMBER=12
[2026-03-05 07:35:12] Starting ATLAS job with PandaID=7038581176
[2026-03-05 07:35:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 08:43:02]  *** The last 200 lines of the pilot log: ***
[2026-03-05 08:43:02]  guid=c6aaa40c-d1bf-426d-954b-15d8c1524d92
[2026-03-05 08:43:02]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-05 08:43:02]  is_altstaged=None
[2026-03-05 08:43:02]  is_tar=False
[2026-03-05 08:43:02]  lfn=log.48955006._005240.job.log.tgz.1
[2026-03-05 08:43:02]  mtime=0
[2026-03-05 08:43:02]  protocol_id=None
[2026-03-05 08:43:02]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-05 08:43:02]  replicas=None
[2026-03-05 08:43:02]  scope=mc23_13p6TeV
[2026-03-05 08:43:02]  status=None
[2026-03-05 08:43:02]  status_code=0
[2026-03-05 08:43:02]  storage_token=
[2026-03-05 08:43:02]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-7038581176/log.48955006._005240.job.log.tgz.1
[2026-03-05 08:43:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1f/8f/log.48955006._005240.job.log.tgz.1
[2026-03-05 08:43:02]  workdir=None
[2026-03-05 08:43:02] ]
[2026-03-05 08:43:02] 2026-03-05 13:42:26,856 | INFO     | time since job start (4014s) is within the limit (349056.0s)
[2026-03-05 08:43:02] 2026-03-05 13:42:26,857 | INFO     | 4022s have passed since pilot start - server update state is 'RUNNING'
[2026-03-05 08:43:02] 2026-03-05 13:42:26,874 | INFO     | transferring file log.48955006._005240.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-7038581176/log.48955006._005240.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-03-05 08:43:02] 2026-03-05 13:42:26,875 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-7038581176/log.48955006._005240.job.log.tgz.1 /tmp/boinchome/slots/0/log.48955006._005240.job
[2026-03-05 08:43:02] 2026-03-05 13:42:26,897 | INFO     | adding to output.list: log.48955006._005240.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1f/8f/log.48955006._005240.job.log.tg
[2026-03-05 08:43:02] 2026-03-05 13:42:26,898 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-05 08:43:02] 2026-03-05 13:42:26,898 | INFO     | summary of transferred files:
[2026-03-05 08:43:02] 2026-03-05 13:42:26,898 | INFO     |  -- lfn=log.48955006._005240.job.log.tgz.1, status_code=0, status=transferred
[2026-03-05 08:43:02] 2026-03-05 13:42:26,898 | INFO     | stage-out finished correctly
[2026-03-05 08:43:02] 2026-03-05 13:42:27,606 | INFO     | monitor loop #306: job 0:7038581176 is in state 'finished'
[2026-03-05 08:43:02] 2026-03-05 13:42:27,606 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-05 08:43:02] 2026-03-05 13:42:27,856 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-05 08:43:02] 2026-03-05 13:42:28,871 | INFO     | time since job start (4016s) is within the limit (349056.0s)
[2026-03-05 08:43:02] 2026-03-05 13:42:29,509 | INFO     | job 7038581176 has state=finished
[2026-03-05 08:43:02] 2026-03-05 13:42:29,509 | INFO     | preparing for final server update for job 7038581176 in state='finished'
[2026-03-05 08:43:02] 2026-03-05 13:42:29,510 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7038581176/jobReport.json
[2026-03-05 08:43:02] 2026-03-05 13:42:29,513 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-03-05 08:43:02] 2026-03-05 13:42:29,513 | INFO     | this job has now completed (state=finished)
[2026-03-05 08:43:02] 2026-03-05 13:42:29,513 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-05 08:43:02] 2026-03-05 13:42:29,513 | INFO     | log transfer has been attempted: DONE
[2026-03-05 08:43:02] 2026-03-05 13:42:29,514 | INFO     | job 7038581176 has finished - writing final server update
[2026-03-05 08:43:02] 2026-03-05 13:42:29,514 | INFO     | total number of processed events: 400 (read)
[2026-03-05 08:43:02] 2026-03-05 13:42:29,517 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7038581176/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 08:43:02] 2026-03-05 13:42:29,518 | INFO     | extracted standard info from prmon json
[2026-03-05 08:43:02] 2026-03-05 13:42:29,518 | INFO     | extracted standard memory fields from prmon json
[2026-03-05 08:43:02] 2026-03-05 13:42:29,518 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-05 08:43:02] 2026-03-05 13:42:29,518 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-05 08:43:02] 2026-03-05 13:42:29,518 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-05 08:43:02] 2026-03-05 13:42:29,520 | INFO     | fitting pss+swap vs Time
[2026-03-05 08:43:02] 2026-03-05 13:42:29,520 | INFO     | sum of square deviations: 63666310.0
[2026-03-05 08:43:02] 2026-03-05 13:42:29,521 | INFO     | sum of deviations: 812716663.9999999
[2026-03-05 08:43:02] 2026-03-05 13:42:29,521 | INFO     | mean x: 1772716230.0
[2026-03-05 08:43:02] 2026-03-05 13:42:29,521 | INFO     | mean y: 2676389.440677966
[2026-03-05 08:43:02] 2026-03-05 13:42:29,521 | INFO     | intersect: -22626497826.314194
[2026-03-05 08:43:02] 2026-03-05 13:42:29,521 | INFO     | chi2: 0.05064648852167716
[2026-03-05 08:43:02] 2026-03-05 13:42:29,521 | INFO     | current memory leak: 12.77 B/s (using 59 data points, chi2=0.05)
[2026-03-05 08:43:02] 2026-03-05 13:42:29,521 | INFO     | could have reported an average CPU frequency of 1684 MHz (6 samples)
[2026-03-05 08:43:02] 2026-03-05 13:42:29,522 | INFO     | ..............................
[2026-03-05 08:43:02] 2026-03-05 13:42:29,522 | INFO     | . Timing measurements:
[2026-03-05 08:43:02] 2026-03-05 13:42:29,522 | INFO     | . get job = 0 s
[2026-03-05 08:43:02] 2026-03-05 13:42:29,522 | INFO     | . initial setup = 7 s
[2026-03-05 08:43:02] 2026-03-05 13:42:29,522 | INFO     | . payload setup = 7 s
[2026-03-05 08:43:02] 2026-03-05 13:42:29,522 | INFO     | . stage-in = 0 s
[2026-03-05 08:43:02] 2026-03-05 13:42:29,522 | INFO     | . payload execution = 3991 s
[2026-03-05 08:43:02] 2026-03-05 13:42:29,522 | INFO     | . stage-out = 0 s
[2026-03-05 08:43:02] 2026-03-05 13:42:29,522 | INFO     | . log creation = 0 s
[2026-03-05 08:43:02] 2026-03-05 13:42:29,523 | INFO     | ..............................
[2026-03-05 08:43:02] 2026-03-05 13:42:29,599 | INFO     | 
[2026-03-05 08:43:02] 2026-03-05 13:42:29,599 | INFO     | job summary report
[2026-03-05 08:43:02] 2026-03-05 13:42:29,599 | INFO     | --------------------------------------------------
[2026-03-05 08:43:02] 2026-03-05 13:42:29,599 | INFO     | PanDA job id: 7038581176
[2026-03-05 08:43:02] 2026-03-05 13:42:29,599 | INFO     | task id: 48955006
[2026-03-05 08:43:02] 2026-03-05 13:42:29,600 | INFO     | errors: (none)
[2026-03-05 08:43:02] 2026-03-05 13:42:29,600 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-05 08:43:02] 2026-03-05 13:42:29,600 | INFO     | pilot state: finished 
[2026-03-05 08:43:02] 2026-03-05 13:42:29,600 | INFO     | transexitcode: 0
[2026-03-05 08:43:02] 2026-03-05 13:42:29,600 | INFO     | exeerrorcode: 0
[2026-03-05 08:43:02] 2026-03-05 13:42:29,600 | INFO     | exeerrordiag: 
[2026-03-05 08:43:02] 2026-03-05 13:42:29,601 | INFO     | exitcode: 0
[2026-03-05 08:43:02] 2026-03-05 13:42:29,601 | INFO     | exitmsg: OK
[2026-03-05 08:43:02] 2026-03-05 13:42:29,601 | INFO     | cpuconsumptiontime: 42209 s
[2026-03-05 08:43:02] 2026-03-05 13:42:29,601 | INFO     | nevents: 400
[2026-03-05 08:43:02] 2026-03-05 13:42:29,601 | INFO     | neventsw: 0
[2026-03-05 08:43:02] 2026-03-05 13:42:29,601 | INFO     | pid: 15041
[2026-03-05 08:43:02] 2026-03-05 13:42:29,601 | INFO     | pgrp: 15041
[2026-03-05 08:43:02] 2026-03-05 13:42:29,602 | INFO     | corecount: 12
[2026-03-05 08:43:02] 2026-03-05 13:42:29,602 | INFO     | event service: False
[2026-03-05 08:43:02] 2026-03-05 13:42:29,602 | INFO     | sizes: {0: 2295368, 1: 2295829, 11: 2295829, 4002: 2321685, 4004: 2330683, 4005: 2330739, 4007: 2331061}
[2026-03-05 08:43:02] 2026-03-05 13:42:29,602 | INFO     | --------------------------------------------------
[2026-03-05 08:43:02] 2026-03-05 13:42:29,602 | INFO     | 
[2026-03-05 08:43:02] 2026-03-05 13:42:29,602 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-05 08:43:02] 2026-03-05 13:42:29,626 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-05 08:43:02] 2026-03-05 13:42:29,627 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-05 08:43:02] 2026-03-05 13:42:29,627 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-05 08:43:02] 2026-03-05 13:42:29,627 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-05 08:43:02] 2026-03-05 13:42:29,627 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-05 08:43:02] 2026-03-05 13:42:29,627 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-05 08:43:02] 2026-03-05 13:42:29,628 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-05 08:43:02] 2026-03-05 13:42:29,628 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-05 08:43:02] 2026-03-05 13:42:29,628 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-05 08:43:02] 2026-03-05 13:42:29,628 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-05 08:43:02] 2026-03-05 13:42:29,628 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-05 08:43:02] 2026-03-05 13:42:29,628 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-05 08:43:02] 2026-03-05 13:42:29,629 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-05 08:43:02] 2026-03-05 13:42:29,629 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-05 08:43:02] 2026-03-05 13:42:29,629 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-05 08:43:02] 2026-03-05 13:42:29,629 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-05 08:43:02] 2026-03-05 13:42:29,629 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-05 08:43:02] 2026-03-05 13:42:29,629 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-05 08:43:02] 2026-03-05 13:42:29,630 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-05 08:43:02] 2026-03-05 13:42:29,630 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-05 08:43:02] 2026-03-05 13:42:29,630 | INFO     | job 7038581176 has completed (purged errors)
[2026-03-05 08:43:02] 2026-03-05 13:42:29,630 | INFO     | overall cleanup function is called
[2026-03-05 08:43:02] 2026-03-05 13:42:30,638 | INFO     | --- collectZombieJob: --- 10, [15041]
[2026-03-05 08:43:02] 2026-03-05 13:42:30,638 | INFO     | zombie collector waiting for pid 15041
[2026-03-05 08:43:02] 2026-03-05 13:42:30,639 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 08:43:02] 2026-03-05 13:42:30,639 | INFO     | collected zombie processes
[2026-03-05 08:43:02] 2026-03-05 13:42:30,639 | INFO     | will attempt to kill all subprocesses of pid=15041
[2026-03-05 08:43:02] 2026-03-05 13:42:30,723 | INFO     | process IDs to be killed: [15041] (in reverse order)
[2026-03-05 08:43:02] 2026-03-05 13:42:30,773 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 08:43:02] 2026-03-05 13:42:30,774 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 08:43:02] 2026-03-05 13:42:30,777 | INFO     | did not find any defunct processes belonging to 15041
[2026-03-05 08:43:02] 2026-03-05 13:42:30,780 | INFO     | did not find any defunct processes belonging to 15041
[2026-03-05 08:43:02] 2026-03-05 13:42:30,781 | INFO     | ready for new job
[2026-03-05 08:43:02] 2026-03-05 13:42:30,781 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 08:43:02] 2026-03-05 13:42:30,782 | INFO     | **************************************
[2026-03-05 08:43:02] 2026-03-05 13:42:30,782 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 08:43:02] 2026-03-05 13:42:30,782 | INFO     | **************************************
[2026-03-05 08:43:02] 2026-03-05 13:42:30,782 | INFO     | 
[2026-03-05 08:43:02] 2026-03-05 13:42:30,783 | INFO     | architecture information:
[2026-03-05 08:43:02] 2026-03-05 13:42:30,783 | INFO     | executing command: cat /etc/os-release
[2026-03-05 08:43:02] 2026-03-05 13:42:30,798 | INFO     | cat /etc/os-release:
[2026-03-05 08:43:02] NAME="CentOS Linux"
[2026-03-05 08:43:02] VERSION="7 (Core)"
[2026-03-05 08:43:02] ID="centos"
[2026-03-05 08:43:02] ID_LIKE="rhel fedora"
[2026-03-05 08:43:02] VERSION_ID="7"
[2026-03-05 08:43:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 08:43:02] ANSI_COLOR="0;31"
[2026-03-05 08:43:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 08:43:02] HOME_URL="https://www.centos.org/"
[2026-03-05 08:43:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 08:43:02] 
[2026-03-05 08:43:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 08:43:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 08:43:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 08:43:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 08:43:02] 
[2026-03-05 08:43:02] 2026-03-05 13:42:30,798 | INFO     | **************************************
[2026-03-05 08:43:02] 2026-03-05 13:42:31,301 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-05 08:43:02] 2026-03-05 13:42:31,318 | INFO     | sufficient remaining disk space (28888268800 B)
[2026-03-05 08:43:02] 2026-03-05 13:42:31,318 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 08:43:02] 2026-03-05 13:42:31,318 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 08:43:02] 2026-03-05 13:42:31,318 | INFO     | update_server=False
[2026-03-05 08:43:02] 2026-03-05 13:42:31,318 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 08:43:02] 2026-03-05 13:42:31,319 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 08:43:02] 2026-03-05 13:42:31,319 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 08:43:02] 2026-03-05 13:42:31,319 | INFO     | aborting loop
[2026-03-05 08:43:02] 2026-03-05 13:42:31,429 | INFO     | all data control threads have been joined
[2026-03-05 08:43:02] 2026-03-05 13:42:31,852 | INFO     | all job control threads have been joined
[2026-03-05 08:43:02] 2026-03-05 13:42:31,888 | INFO     | all payload control threads have been joined
[2026-03-05 08:43:02] 2026-03-05 13:42:32,324 | INFO     | [job] retrieve thread has finished
[2026-03-05 08:43:02] 2026-03-05 13:42:32,325 | INFO     | [job] queue monitor thread has finished
[2026-03-05 08:43:02] 2026-03-05 13:42:32,325 | INFO     | [job] job monitor thread has finished
[2026-03-05 08:43:02] 2026-03-05 13:42:32,342 | INFO     | [payload] validate_post thread has finished
[2026-03-05 08:43:02] 2026-03-05 13:42:32,435 | INFO     | [data] control thread has finished
[2026-03-05 08:43:02] 2026-03-05 13:42:32,488 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 08:43:02] 2026-03-05 13:42:32,570 | INFO     | [data] copytool_in thread has finished
[2026-03-05 08:43:02] 2026-03-05 13:42:32,600 | INFO     | [payload] failed_post thread has finished
[2026-03-05 08:43:02] 2026-03-05 13:42:32,858 | INFO     | [job] control thread has finished
[2026-03-05 08:43:02] 2026-03-05 13:42:32,893 | INFO     | [payload] control thread has finished
[2026-03-05 08:43:02] 2026-03-05 13:42:33,239 | INFO     | [job] validate thread has finished
[2026-03-05 08:43:02] 2026-03-05 13:42:33,365 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 08:43:02] 2026-03-05 13:42:33,550 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 08:43:02] 2026-03-05 13:42:33,796 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 08:43:02] 2026-03-05 13:42:33,939 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 08:43:02] 2026-03-05 13:42:34,494 | INFO     | [data] copytool_out thread has finished
[2026-03-05 08:43:02] 2026-03-05 13:42:37,900 | INFO     | [monitor] cgroup control has ended
[2026-03-05 08:43:02] 2026-03-05 13:42:37,945 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 08:43:02] 2026-03-05 13:42:41,733 | INFO     | job.realtimelogging is not enabled
[2026-03-05 08:43:02] 2026-03-05 13:42:42,738 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 08:43:02] 2026-03-05 13:42:43,127 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139799213270848)>', '<ExcThread(monitor, started 139798601774848)>']
[2026-03-05 08:43:02] 2026-03-05 13:42:48,152 | INFO     | all workflow threads have been joined
[2026-03-05 08:43:02] 2026-03-05 13:42:48,153 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 08:43:02] 2026-03-05 13:42:48,153 | INFO     | traces error code: 0
[2026-03-05 08:43:02] 2026-03-05 13:42:48,153 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 08:43:02] 2026-03-05 13:43:02,068 | INFO     | PID=10667 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-05 08:43:02] 2026-03-05 13:43:02,069 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 08:43:02] 2026-03-05 13:43:02,069 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 08:43:02] 2026-03-05 13:43:02,069 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 08:43:02] 2026-03-05 13:43:02,069 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 08:43:02] 2026-03-05 13:43:02,069 | CRITICAL | thread 'MainThread' is not alive
[2026-03-05 08:43:02] 2026-03-05 13:43:02,069 | INFO     | [monitor] control thread has ended
[2026-03-05 08:43:02] 2026-03-05 13:43:02,152 [wrapper] ==== pilot stdout END ====
[2026-03-05 08:43:02] 2026-03-05 13:43:02,156 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 08:43:02] 2026-03-05 13:43:02,159 [wrapper] pilotpid: 10667
[2026-03-05 08:43:02] 2026-03-05 13:43:02,163 [wrapper] Pilot exit status: 0
[2026-03-05 08:43:02] 2026-03-05 13:43:02,179 [wrapper] pandaids: 7038581176
[2026-03-05 08:43:02] 2026-03-05 13:43:02,218 [wrapper] cleanup supervisor_pilot  1158 10668
[2026-03-05 08:43:02] 2026-03-05 13:43:02,222 [wrapper] Test setup, not cleaning
[2026-03-05 08:43:02] 2026-03-05 13:43:02,226 [wrapper] apfmon messages muted
[2026-03-05 08:43:02] 2026-03-05 13:43:02,230 [wrapper] ==== wrapper stdout END ====
[2026-03-05 08:43:02] 2026-03-05 13:43:02,234 [wrapper] ==== wrapper stderr END ====
[2026-03-05 08:43:02]  *** Error codes and diagnostics ***
[2026-03-05 08:43:02]     "exeErrorCode": 0,
[2026-03-05 08:43:02]     "exeErrorDiag": "",
[2026-03-05 08:43:02]     "pilotErrorCode": 0,
[2026-03-05 08:43:02]     "pilotErrorDiag": "",
[2026-03-05 08:43:02]  *** Listing of results directory ***
[2026-03-05 08:43:02] total 623824
[2026-03-05 08:43:02] -rw-r--r-- 1 boincer umatlas    584627 Mar  5 03:55 pilot3.tar.gz
[2026-03-05 08:43:02] -rwx------ 1 boincer umatlas     36322 Mar  5 03:56 runpilot2-wrapper.sh
[2026-03-05 08:43:02] -rw-r--r-- 1 boincer umatlas      5111 Mar  5 03:56 queuedata.json
[2026-03-05 08:43:02] -rw-r--r-- 1 boincer umatlas       100 Mar  5 07:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 08:43:02] -rwxr-xr-x 1 boincer umatlas      7986 Mar  5 07:35 run_atlas
[2026-03-05 08:43:02] -rw-r--r-- 1 boincer umatlas       105 Mar  5 07:35 job.xml
[2026-03-05 08:43:02] -rw-r--r-- 2 boincer umatlas 447532032 Mar  5 07:35 EVNT.46701403._000105.pool.root.1
[2026-03-05 08:43:02] -rw-r--r-- 2 boincer umatlas     15845 Mar  5 07:35 start_atlas.sh
[2026-03-05 08:43:02] drwxrwx--x 2 boincer umatlas      4096 Mar  5 07:35 shared
[2026-03-05 08:43:02] -rw-r--r-- 2 boincer umatlas    597956 Mar  5 07:35 input.tar.gz
[2026-03-05 08:43:02] -rw-r--r-- 1 boincer umatlas         0 Mar  5 07:35 boinc_lockfile
[2026-03-05 08:43:02] -rw-r--r-- 1 boincer umatlas      2562 Mar  5 07:35 pandaJob.out
[2026-03-05 08:43:02] -rw------- 1 boincer umatlas        57 Mar  5 07:35 setup.sh.local
[2026-03-05 08:43:02] -rw------- 1 boincer umatlas    998489 Mar  5 07:35 agis_schedconf.cvmfs.json
[2026-03-05 08:43:02] -rw------- 1 boincer umatlas   1521291 Mar  5 07:35 agis_ddmendpoints.agis.ALL.json
[2026-03-05 08:43:02] -rw------- 1 boincer umatlas       434 Mar  5 07:35 workernode_map.json
[2026-03-05 08:43:02] drwx------ 5 boincer umatlas      4096 Mar  5 07:35 pilot3
[2026-03-05 08:43:02] -rw-r--r-- 1 boincer umatlas      5953 Mar  5 08:39 init_data.xml
[2026-03-05 08:43:02] -rw------- 1 boincer umatlas 185329978 Mar  5 08:41 HITS.48955006._005240.pool.root.1
[2026-03-05 08:43:02] -rw-r--r-- 1 boincer umatlas       530 Mar  5 08:41 boinc_task_state.xml
[2026-03-05 08:43:02] -rw------- 1 boincer umatlas        95 Mar  5 08:42 pilot_heartbeat.json
[2026-03-05 08:43:02] -rw------- 1 boincer umatlas      1058 Mar  5 08:42 memory_monitor_summary.json
[2026-03-05 08:43:02] -rw------- 1 boincer umatlas    408522 Mar  5 08:42 log.48955006._005240.job.log.tgz.1
[2026-03-05 08:43:02] -rw------- 1 boincer umatlas      6409 Mar  5 08:42 heartbeat.json
[2026-03-05 08:43:02] -rw-r--r-- 1 boincer umatlas        27 Mar  5 08:42 wrapper_checkpoint.txt
[2026-03-05 08:43:02] -rw-r--r-- 1 boincer umatlas      8192 Mar  5 08:42 boinc_mmap_file
[2026-03-05 08:43:02] -rw------- 1 boincer umatlas       815 Mar  5 08:43 pilotlog.txt
[2026-03-05 08:43:02] -rw------- 1 boincer umatlas    591115 Mar  5 08:43 log.48955006._005240.job.log.1
[2026-03-05 08:43:02] -rw------- 1 boincer umatlas       357 Mar  5 08:43 output.list
[2026-03-05 08:43:02] -rw-r--r-- 1 boincer umatlas       620 Mar  5 08:43 runtime_log
[2026-03-05 08:43:02] -rw------- 1 boincer umatlas   1013760 Mar  5 08:43 result.tar.gz
[2026-03-05 08:43:02] -rw-r--r-- 1 boincer umatlas      9343 Mar  5 08:43 runtime_log.err
[2026-03-05 08:43:02] -rw------- 1 boincer umatlas       659 Mar  5 08:43 n8wLDmTgJI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmdLLLDmUTXD3n.diag
[2026-03-05 08:43:02] -rw-r--r-- 1 boincer umatlas     21343 Mar  5 08:43 stderr.txt
[2026-03-05 08:43:02] HITS file was successfully produced:
[2026-03-05 08:43:02] -rw------- 1 boincer umatlas 185329978 Mar  5 08:41 shared/HITS.pool.root.1
[2026-03-05 08:43:02]  *** Contents of shared directory: ***
[2026-03-05 08:43:02] total 619632
[2026-03-05 08:43:02] -rw-r--r-- 2 boincer umatlas 447532032 Mar  5 07:35 ATLAS.root_0
[2026-03-05 08:43:02] -rw-r--r-- 2 boincer umatlas     15845 Mar  5 07:35 start_atlas.sh
[2026-03-05 08:43:02] -rw-r--r-- 2 boincer umatlas    597956 Mar  5 07:35 input.tar.gz
[2026-03-05 08:43:02] -rw------- 1 boincer umatlas 185329978 Mar  5 08:41 HITS.pool.root.1
[2026-03-05 08:43:02] -rw------- 1 boincer umatlas   1013760 Mar  5 08:43 result.tar.gz
08:43:03 (6688): run_atlas exited; CPU time 42184.965526
08:43:03 (6688): called boinc_finish(0)

</stderr_txt>
]]>

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