Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:08:28 (1589874): wrapper (7.7.26015): starting
04:08:28 (1589874): wrapper: running run_atlas (--nthreads 8)
[2026-03-05 04:08:28] Arguments: --nthreads 8
[2026-03-05 04:08:28] Threads: 8
[2026-03-05 04:08:28] Checking for CVMFS
[2026-03-05 04:08:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-05 04:08:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-05 04:08:29] Running cvmfs_config stat atlas.cern.ch
[2026-03-05 04:08:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-05 04:08:29] 2.11.3.0 767685 135850 374248 156918 3 593 26516140 45568000 12537 130560 0 721185052 99.806 429860413 22480 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2026-03-05 04:08:29] CVMFS is ok
[2026-03-05 04:08:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-05 04:08:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-05 04:08:29] Further information can be found at the LHC@home message board.
[2026-03-05 04:08:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 04:08:29] Checking for apptainer binary...
[2026-03-05 04:08:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-05 04:08:29] Running /usr/bin/apptainer --version
[2026-03-05 04:08:29] apptainer version 1.4.1-1.el9
[2026-03-05 04:08:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 04:08:29] wns0005.triumf.lcg
[2026-03-05 04:08:29] apptainer works
[2026-03-05 04:08:29] Set ATHENA_PROC_NUMBER=8
[2026-03-05 04:08:29] Set ATHENA_CORE_NUMBER=8
[2026-03-05 04:08:29] Starting ATLAS job with PandaID=7038574700
[2026-03-05 04:08:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 04:16:36]  *** The last 200 lines of the pilot log: ***
[2026-03-05 04:16:36] 2026-03-05 12:15:43,956 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-05 04:16:36] 2026-03-05 12:15:43,957 | WARNING  | wrong length of table data, x=[1772712748.0, 1772712809.0], y=[1510.0, 471985.0] (must be same and length>=4)
[2026-03-05 04:16:36] 2026-03-05 12:15:43,957 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2026-03-05 04:16:36] 2026-03-05 12:15:43,957 | INFO     | ..............................
[2026-03-05 04:16:36] 2026-03-05 12:15:43,957 | INFO     | . Timing measurements:
[2026-03-05 04:16:36] 2026-03-05 12:15:43,957 | INFO     | . get job = 0 s
[2026-03-05 04:16:36] 2026-03-05 12:15:43,958 | INFO     | . initial setup = 40 s
[2026-03-05 04:16:36] 2026-03-05 12:15:43,958 | INFO     | . payload setup = 53 s
[2026-03-05 04:16:36] 2026-03-05 12:15:43,958 | INFO     | . stage-in = 0 s
[2026-03-05 04:16:36] 2026-03-05 12:15:43,958 | INFO     | . payload execution = 130 s
[2026-03-05 04:16:36] 2026-03-05 12:15:43,958 | INFO     | . stage-out = 2 s
[2026-03-05 04:16:36] 2026-03-05 12:15:43,958 | INFO     | . log creation = 0 s
[2026-03-05 04:16:36] 2026-03-05 12:15:43,958 | INFO     | ..............................
[2026-03-05 04:16:36] 2026-03-05 12:15:43,958 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-05 04:16:36] 2026-03-05 12:15:43,958 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7038574700/pilotlog.txt
[2026-03-05 04:16:36] 2026-03-05 12:15:44,174 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-03-05 04:16:36] - Log from pilotlog.txt -
[2026-03-05 04:16:36] 2026-03-05 12:15:43,937 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-7038574700/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 04:16:36] 2026-03-05 12:15:43,955 | INFO     | extracted standard info from prmon json
[2026-03-05 04:16:36] 2026-03-05 12:15:43,956 | INFO     | extracted standard memory fields from prmon json
[2026-03-05 04:16:36] 2026-03-05 12:15:43,956 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-05 04:16:36] 2026-03-05 12:15:43,956 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-05 04:16:36] 2026-03-05 12:15:43,956 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-05 04:16:36] 2026-03-05 12:15:43,957 | WARNING  | wrong length of table data, x=[1772712748.0, 1772712809.0], y=[1510.0, 471985.0] (must be same and length>=4)
[2026-03-05 04:16:36] 2026-03-05 12:15:43,957 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2026-03-05 04:16:36] 2026-03-05 12:15:43,957 | INFO     | ..............................
[2026-03-05 04:16:36] 2026-03-05 12:15:43,957 | INFO     | . Timing measurements:
[2026-03-05 04:16:36] 2026-03-05 12:15:43,957 | INFO     | . get job = 0 s
[2026-03-05 04:16:36] 2026-03-05 12:15:43,958 | INFO     | . initial setup = 40 s
[2026-03-05 04:16:36] 2026-03-05 12:15:43,958 | INFO     | . payload setup = 53 s
[2026-03-05 04:16:36] 2026-03-05 12:15:43,958 | INFO     | . stage-in = 0 s
[2026-03-05 04:16:36] 2026-03-05 12:15:43,958 | INFO     | . payload execution = 130 s
[2026-03-05 04:16:36] 2026-03-05 12:15:43,958 | INFO     | . stage-out = 2 s
[2026-03-05 04:16:36] 2026-03-05 12:15:43,958 | INFO     | . log creation = 0 s
[2026-03-05 04:16:36] 2026-03-05 12:15:43,958 | INFO     | ..............................
[2026-03-05 04:16:36] 2026-03-05 12:15:43,958 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-05 04:16:36] 2026-03-05 12:15:43,958 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7038574700/pilotlog.txt
[2026-03-05 04:16:36] 2026-03-05 12:15:44,174 | WARNING  | 
[2026-03-05 04:16:36] [begin log extracts]
[2026-03-05 04:16:36] - Log from pilotlog.txt -
[2026-03-05 04:16:36] 2026-03-05 12:15:43,937 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-7038574700/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 04:16:36] 2026-03-05 12:15:43,955 | INFO     | extracted standard info from prmon json
[2026-03-05 04:16:36] 2026-03-05 12:15:43,956 | INFO     | extracted standard memory fields from prmon json
[2026-03-05 04:16:36] 2026-03-05 12:15:43,956 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-05 04:16:36] 2026-03-05 12:15:43,956 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-05 04:16:36] 2026-03-05 12:15:43,956 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-05 04:16:36] 2026-03-05 12:15:43,957 | WARNING  | wrong length of table data, x=[1772712748.0, 1772712809.0], y=[1510.0, 471985.0] (must be same and length>=4)
[2026-03-05 04:16:36] 2026-03-05 12:15:43,957 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2026-03-05 04:16:36] 2026-03-05 12:15:43,957 | INFO     | ..............................
[2026-03-05 04:16:36] 2026-03-05 12:15:43,957 | INFO     | . Timing measurements:
[2026-03-05 04:16:36] 2026-03-05 12:15:43,957 | INFO     | . get job = 0 s
[2026-03-05 04:16:36] 2026-03-05 12:15:43,958 | INFO     | . initial setup = 40 s
[2026-03-05 04:16:36] 2026-03-05 12:15:43,958 | INFO     | . payload setup = 53 s
[2026-03-05 04:16:36] 2026-03-05 12:15:43,958 | INFO     | . stage-in = 0 s
[2026-03-05 04:16:36] 2026-03-05 12:15:43,958 | INFO     | . payload execution = 130 s
[2026-03-05 04:16:36] 2026-03-05 12:15:43,958 | INFO     | . stage-out = 2 s
[2026-03-05 04:16:36] 2026-03-05 12:15:43,958 | INFO     | . log creation = 0 s
[2026-03-05 04:16:36] 2026-03-05 12:15:43,958 | INFO     | ..............................
[2026-03-05 04:16:36] 2026-03-05 12:15:43,958 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-05 04:16:36] 2026-03-05 12:15:43,958 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7038574700/pilotlog.txt
[2026-03-05 04:16:36] [end log extracts]
[2026-03-05 04:16:36] 2026-03-05 12:15:44,175 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2026-03-05 04:16:36] 2026-03-05 12:15:44,175 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-03-05 04:16:36] 2026-03-05 12:15:44,378 | INFO     | 
[2026-03-05 04:16:36] 2026-03-05 12:15:44,378 | INFO     | job summary report
[2026-03-05 04:16:36] 2026-03-05 12:15:44,378 | INFO     | --------------------------------------------------
[2026-03-05 04:16:36] 2026-03-05 12:15:44,378 | INFO     | PanDA job id: 7038574700
[2026-03-05 04:16:36] 2026-03-05 12:15:44,378 | INFO     | task id: 48955006
[2026-03-05 04:16:36] 2026-03-05 12:15:44,378 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-03-05 04:13:25,111 CRITICAL Transform executor raised TransformValidationExceptio
[2026-03-05 04:16:36] 2026-03-05 12:15:44,378 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-05 04:16:36] 2026-03-05 12:15:44,379 | INFO     | pilot state: failed 
[2026-03-05 04:16:36] 2026-03-05 12:15:44,379 | INFO     | transexitcode: 65
[2026-03-05 04:16:36] 2026-03-05 12:15:44,379 | INFO     | exeerrorcode: 65
[2026-03-05 04:16:36] 2026-03-05 12:15:44,379 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-03-05 04:16:36] 2026-03-05 12:15:44,379 | INFO     | exitcode: 65
[2026-03-05 04:16:36] 2026-03-05 12:15:44,379 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-03-05 04:16:36] 2026-03-05 12:15:44,379 | INFO     | cpuconsumptiontime: 15 s
[2026-03-05 04:16:36] 2026-03-05 12:15:44,379 | INFO     | nevents: 0
[2026-03-05 04:16:36] 2026-03-05 12:15:44,379 | INFO     | neventsw: 0
[2026-03-05 04:16:36] 2026-03-05 12:15:44,379 | INFO     | pid: 1599096
[2026-03-05 04:16:36] 2026-03-05 12:15:44,379 | INFO     | pgrp: 1599096
[2026-03-05 04:16:36] 2026-03-05 12:15:44,379 | INFO     | corecount: 8
[2026-03-05 04:16:36] 2026-03-05 12:15:44,379 | INFO     | event service: False
[2026-03-05 04:16:36] 2026-03-05 12:15:44,379 | INFO     | sizes: {0: 2295309, 1: 2295365, 3: 2295854, 4: 2295854, 188: 2319135, 190: 2323427, 192: 2323583, 309: 2323749}
[2026-03-05 04:16:36] 2026-03-05 12:15:44,380 | INFO     | --------------------------------------------------
[2026-03-05 04:16:36] 2026-03-05 12:15:44,380 | INFO     | 
[2026-03-05 04:16:36] 2026-03-05 12:15:44,380 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-03-05 04:16:36] 2026-03-05 12:15:44,685 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-05 04:16:36] 2026-03-05 12:15:44,686 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-05 04:16:36] 2026-03-05 12:15:44,686 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-05 04:16:36] 2026-03-05 12:15:44,686 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-05 04:16:36] 2026-03-05 12:15:44,686 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-05 04:16:36] 2026-03-05 12:15:44,686 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-05 04:16:36] 2026-03-05 12:15:44,686 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-05 04:16:36] 2026-03-05 12:15:44,686 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-05 04:16:36] 2026-03-05 12:15:44,686 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-05 04:16:36] 2026-03-05 12:15:44,686 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-05 04:16:36] 2026-03-05 12:15:44,686 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-05 04:16:36] 2026-03-05 12:15:44,686 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-05 04:16:36] 2026-03-05 12:15:44,686 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-05 04:16:36] 2026-03-05 12:15:44,686 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-05 04:16:36] 2026-03-05 12:15:44,687 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-05 04:16:36] 2026-03-05 12:15:44,687 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-05 04:16:36] 2026-03-05 12:15:44,687 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-05 04:16:36] 2026-03-05 12:15:44,687 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-05 04:16:36] 2026-03-05 12:15:44,687 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-05 04:16:36] 2026-03-05 12:15:44,687 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-05 04:16:36] 2026-03-05 12:15:44,687 | INFO     | job 7038574700 has completed (purged errors)
[2026-03-05 04:16:36] 2026-03-05 12:15:44,687 | INFO     | overall cleanup function is called
[2026-03-05 04:16:36] 2026-03-05 12:15:45,694 | INFO     | --- collectZombieJob: --- 10, [1599096]
[2026-03-05 04:16:36] 2026-03-05 12:15:45,694 | INFO     | zombie collector waiting for pid 1599096
[2026-03-05 04:16:36] 2026-03-05 12:15:45,694 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 04:16:36] 2026-03-05 12:15:45,694 | INFO     | collected zombie processes
[2026-03-05 04:16:36] 2026-03-05 12:15:45,694 | INFO     | will attempt to kill all subprocesses of pid=1599096
[2026-03-05 04:16:36] 2026-03-05 12:15:46,234 | INFO     | process IDs to be killed: [1599096] (in reverse order)
[2026-03-05 04:16:36] 2026-03-05 12:15:47,169 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 04:16:36] 2026-03-05 12:15:47,170 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 04:16:36] 2026-03-05 12:15:47,208 | INFO     | did not find any defunct processes belonging to 1599096
[2026-03-05 04:16:36] 2026-03-05 12:15:47,221 | INFO     | did not find any defunct processes belonging to 1599096
[2026-03-05 04:16:36] 2026-03-05 12:15:47,221 | INFO     | ready for new job
[2026-03-05 04:16:36] 2026-03-05 12:15:47,222 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 04:16:36] 2026-03-05 12:15:47,223 | INFO     | **************************************
[2026-03-05 04:16:36] 2026-03-05 12:15:47,223 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 04:16:36] 2026-03-05 12:15:47,223 | INFO     | **************************************
[2026-03-05 04:16:36] 2026-03-05 12:15:47,223 | INFO     | 
[2026-03-05 04:16:36] 2026-03-05 12:15:47,224 | INFO     | architecture information:
[2026-03-05 04:16:36] 2026-03-05 12:15:47,228 | INFO     | executing command: cat /etc/os-release
[2026-03-05 04:16:36] 2026-03-05 12:15:47,416 | INFO     | cat /etc/os-release:
[2026-03-05 04:16:36] NAME="CentOS Linux"
[2026-03-05 04:16:36] VERSION="7 (Core)"
[2026-03-05 04:16:36] ID="centos"
[2026-03-05 04:16:36] ID_LIKE="rhel fedora"
[2026-03-05 04:16:36] VERSION_ID="7"
[2026-03-05 04:16:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 04:16:36] ANSI_COLOR="0;31"
[2026-03-05 04:16:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 04:16:36] HOME_URL="https://www.centos.org/"
[2026-03-05 04:16:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 04:16:36] 
[2026-03-05 04:16:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 04:16:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 04:16:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 04:16:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 04:16:36] 
[2026-03-05 04:16:36] 2026-03-05 12:15:47,417 | INFO     | **************************************
[2026-03-05 04:16:36] 2026-03-05 12:15:47,922 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-03-05 04:16:36] 2026-03-05 12:15:47,958 | INFO     | sufficient remaining disk space (1453003374592 B)
[2026-03-05 04:16:36] 2026-03-05 12:15:47,958 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 04:16:36] 2026-03-05 12:15:47,959 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 04:16:36] 2026-03-05 12:15:47,959 | INFO     | update_server=False
[2026-03-05 04:16:36] 2026-03-05 12:15:47,959 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 04:16:36] 2026-03-05 12:15:48,030 | INFO     | all job control threads have been joined
[2026-03-05 04:16:36] 2026-03-05 12:15:48,228 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-05 04:16:36] 2026-03-05 12:15:48,228 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-05 04:16:36] 2026-03-05 12:15:48,228 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 04:16:36] 2026-03-05 12:15:48,228 | INFO     | will abort loop
[2026-03-05 04:16:36] 2026-03-05 12:15:48,432 | INFO     | all data control threads have been joined
[2026-03-05 04:16:36] 2026-03-05 12:15:48,905 | INFO     | all payload control threads have been joined
[2026-03-05 04:16:36] 2026-03-05 12:15:48,965 | INFO     | [job] retrieve thread has finished
[2026-03-05 04:16:36] 2026-03-05 12:15:48,971 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 04:16:36] 2026-03-05 12:15:49,000 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 04:16:36] 2026-03-05 12:15:49,003 | INFO     | [data] copytool_in thread has finished
[2026-03-05 04:16:36] 2026-03-05 12:15:49,007 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 04:16:36] 2026-03-05 12:15:49,038 | INFO     | [job] control thread has finished
[2026-03-05 04:16:36] 2026-03-05 12:15:49,236 | INFO     | [job] job monitor thread has finished
[2026-03-05 04:16:36] 2026-03-05 12:15:49,391 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 04:16:36] 2026-03-05 12:15:49,439 | INFO     | [data] control thread has finished
[2026-03-05 04:16:36] 2026-03-05 12:15:49,535 | INFO     | [payload] validate_post thread has finished
[2026-03-05 04:16:36] 2026-03-05 12:15:49,653 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 04:16:36] 2026-03-05 12:15:49,917 | INFO     | [payload] control thread has finished
[2026-03-05 04:16:36] 2026-03-05 12:15:49,976 | INFO     | [payload] failed_post thread has finished
[2026-03-05 04:16:36] 2026-03-05 12:15:50,005 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 04:16:36] 2026-03-05 12:15:50,033 | INFO     | [job] validate thread has finished
[2026-03-05 04:16:36] 2026-03-05 12:15:50,398 | INFO     | [job] queue monitor thread has finished
[2026-03-05 04:16:36] 2026-03-05 12:15:50,900 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 04:16:36] 2026-03-05 12:15:51,013 | INFO     | [data] copytool_out thread has finished
[2026-03-05 04:16:36] 2026-03-05 12:15:54,910 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 04:16:36] 2026-03-05 12:16:18,140 | INFO     | PID=1594014 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-05 04:16:36] 2026-03-05 12:16:18,147 | INFO     | .. there are 19 such processes running
[2026-03-05 04:16:36] 2026-03-05 12:16:18,148 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 04:16:36] 2026-03-05 12:16:18,148 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 04:16:36] 2026-03-05 12:16:18,148 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 04:16:36] 2026-03-05 12:16:29,164 | INFO     | [monitor] cgroup control has ended
[2026-03-05 04:16:36] 2026-03-05 12:16:30,059 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140042830387008)>', '<ExcThread(monitor, started 140042123056896)>']
[2026-03-05 04:16:36] 2026-03-05 12:16:30,220 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 04:16:36] 2026-03-05 12:16:30,220 | INFO     | [monitor] control thread has ended
[2026-03-05 04:16:36] 2026-03-05 12:16:35,096 | INFO     | all workflow threads have been joined
[2026-03-05 04:16:36] 2026-03-05 12:16:35,096 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 04:16:36] 2026-03-05 12:16:35,096 | INFO     | traces error code: 0
[2026-03-05 04:16:36] 2026-03-05 12:16:35,097 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 04:16:36] 2026-03-05 12:16:35,758 [wrapper] ==== pilot stdout END ====
[2026-03-05 04:16:36] 2026-03-05 12:16:35,787 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 04:16:36] 2026-03-05 12:16:35,830 [wrapper] pilotpid: 1594014
[2026-03-05 04:16:36] 2026-03-05 12:16:35,867 [wrapper] Pilot exit status: 0
[2026-03-05 04:16:36] 2026-03-05 12:16:35,876 [wrapper] pandaids: 7038574700
[2026-03-05 04:16:36] 2026-03-05 12:16:35,907 [wrapper] cleanup supervisor_pilot 1594020 1594015
[2026-03-05 04:16:36] 2026-03-05 12:16:35,909 [wrapper] Test setup, not cleaning
[2026-03-05 04:16:36] 2026-03-05 12:16:35,911 [wrapper] apfmon messages muted
[2026-03-05 04:16:36] 2026-03-05 12:16:35,912 [wrapper] ==== wrapper stdout END ====
[2026-03-05 04:16:36] 2026-03-05 12:16:35,914 [wrapper] ==== wrapper stderr END ====
[2026-03-05 04:16:36]  *** Error codes and diagnostics ***
[2026-03-05 04:16:36]     "exeErrorCode": 65,
[2026-03-05 04:16:36]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-03-05 04:16:36]     "pilotErrorCode": 1305,
[2026-03-05 04:16:36]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-03-05 04:16:36]  *** Listing of results directory ***
[2026-03-05 04:16:36] total 431672
[2026-03-05 04:16:36] -rw-r--r--. 1 boinc boinc    584627 Mar  5 00:08 pilot3.tar.gz
[2026-03-05 04:16:36] -rwx------. 1 boinc boinc     36322 Mar  5 00:08 runpilot2-wrapper.sh
[2026-03-05 04:16:36] -rw-r--r--. 1 boinc boinc      5111 Mar  5 00:10 queuedata.json
[2026-03-05 04:16:36] -rw-r--r--. 1 boinc boinc       100 Mar  5 04:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 04:16:36] -rwxr-xr-x. 1 boinc boinc      7986 Mar  5 04:08 run_atlas
[2026-03-05 04:16:36] -rw-r--r--. 1 boinc boinc       105 Mar  5 04:08 job.xml
[2026-03-05 04:16:36] -rw-r--r--. 1 boinc boinc      6443 Mar  5 04:08 init_data.xml
[2026-03-05 04:16:36] -rw-r--r--. 2 boinc boinc 437850220 Mar  5 04:08 EVNT.46701403._000084.pool.root.1
[2026-03-05 04:16:36] -rw-r--r--. 2 boinc boinc     15845 Mar  5 04:08 start_atlas.sh
[2026-03-05 04:16:36] drwxrwx--x. 2 boinc boinc      4096 Mar  5 04:08 shared
[2026-03-05 04:16:36] -rw-r--r--. 2 boinc boinc    597951 Mar  5 04:08 input.tar.gz
[2026-03-05 04:16:36] -rw-r--r--. 1 boinc boinc         0 Mar  5 04:08 boinc_lockfile
[2026-03-05 04:16:36] -rw-r--r--. 1 boinc boinc      2562 Mar  5 04:08 pandaJob.out
[2026-03-05 04:16:36] -rw-------. 1 boinc boinc    998489 Mar  5 04:09 agis_schedconf.cvmfs.json
[2026-03-05 04:16:36] -rw-------. 1 boinc boinc   1521291 Mar  5 04:09 agis_ddmendpoints.agis.ALL.json
[2026-03-05 04:16:36] -rw-------. 1 boinc boinc       442 Mar  5 04:10 workernode_map.json
[2026-03-05 04:16:36] drwx------. 5 boinc boinc      4096 Mar  5 04:10 pilot3
[2026-03-05 04:16:36] -rw-r--r--. 1 boinc boinc       524 Mar  5 04:13 boinc_task_state.xml
[2026-03-05 04:16:36] -rw-------. 1 boinc boinc       984 Mar  5 04:13 memory_monitor_summary.json
[2026-03-05 04:16:36] -rw-------. 1 boinc boinc     23047 Mar  5 04:13 log.48955006._004192.job.log.tgz.1
[2026-03-05 04:16:36] -rw-------. 1 boinc boinc      7013 Mar  5 04:15 heartbeat.json
[2026-03-05 04:16:36] -rw-------. 1 boinc boinc        95 Mar  5 04:16 pilot_heartbeat.json
[2026-03-05 04:16:36] -rw-r--r--. 1 boinc boinc      8192 Mar  5 04:16 boinc_mmap_file
[2026-03-05 04:16:36] -rw-r--r--. 1 boinc boinc        23 Mar  5 04:16 wrapper_checkpoint.txt
[2026-03-05 04:16:36] -rw-------. 1 boinc boinc      5005 Mar  5 04:16 pilotlog.txt
[2026-03-05 04:16:36] -rw-------. 1 boinc boinc     98939 Mar  5 04:16 log.48955006._004192.job.log.1
[2026-03-05 04:16:36] -rw-------. 1 boinc boinc       188 Mar  5 04:16 output.list
[2026-03-05 04:16:36] -rw-r--r--. 1 boinc boinc       620 Mar  5 04:16 runtime_log
[2026-03-05 04:16:36] -rw-------. 1 boinc boinc    143360 Mar  5 04:16 result.tar.gz
[2026-03-05 04:16:36] -rw-r--r--. 1 boinc boinc      8633 Mar  5 04:16 runtime_log.err
[2026-03-05 04:16:36] -rw-------. 1 boinc boinc       644 Mar  5 04:16 OJoMDmHwII9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmQGNLDmIgTpym.diag
[2026-03-05 04:16:36] -rw-r--r--. 1 boinc boinc     21893 Mar  5 04:16 stderr.txt
[2026-03-05 04:16:36] No HITS result produced
[2026-03-05 04:16:36]  *** Contents of shared directory: ***
[2026-03-05 04:16:36] total 428336
[2026-03-05 04:16:36] -rw-r--r--. 2 boinc boinc 437850220 Mar  5 04:08 ATLAS.root_0
[2026-03-05 04:16:36] -rw-r--r--. 2 boinc boinc     15845 Mar  5 04:08 start_atlas.sh
[2026-03-05 04:16:36] -rw-r--r--. 2 boinc boinc    597951 Mar  5 04:08 input.tar.gz
[2026-03-05 04:16:36] -rw-------. 1 boinc boinc    143360 Mar  5 04:16 result.tar.gz
04:16:38 (1589874): run_atlas exited; CPU time 28.237758
04:16:38 (1589874): called boinc_finish(0)

</stderr_txt>
]]>

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