Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:51:13 (1972651): wrapper (7.7.26015): starting
18:51:13 (1972651): wrapper: running run_atlas (--nthreads 4)
[2026-03-05 18:51:13] Arguments: --nthreads 4
[2026-03-05 18:51:13] Threads: 4
[2026-03-05 18:51:13] Checking for CVMFS
[2026-03-05 18:51:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-05 18:51:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-05 18:51:14] Running cvmfs_config stat atlas.cern.ch
[2026-03-05 18:51:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-05 18:51:14] 2.9.2.0 56696 11675 102332 156928 2 50 25995006 36864000 0 130560 0 5322580 99.984 438476 14171 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-05 18:51:14] CVMFS is ok
[2026-03-05 18:51:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-05 18:51:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-05 18:51:14] Further information can be found at the LHC@home message board.
[2026-03-05 18:51:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 18:51:14] Checking for apptainer binary...
[2026-03-05 18:51:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-05 18:51:14] Running /usr/bin/apptainer --version
[2026-03-05 18:51:14] apptainer version 1.4.1-1.1
[2026-03-05 18:51:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 18:51:14] thA381
[2026-03-05 18:51:14] apptainer works
[2026-03-05 18:51:14] Set ATHENA_PROC_NUMBER=4
[2026-03-05 18:51:14] Set ATHENA_CORE_NUMBER=4
[2026-03-05 18:51:14] Starting ATLAS job with PandaID=7038553126
[2026-03-05 18:51:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 19:59:50]  *** The last 200 lines of the pilot log: ***
[2026-03-05 19:59:50] 2026-03-05 18:59:20,164 | INFO     | process IDs to be killed: [1981273] (in reverse order)
[2026-03-05 19:59:50] 2026-03-05 18:59:20,198 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 19:59:50] 2026-03-05 18:59:20,199 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 19:59:50] 2026-03-05 18:59:20,200 | INFO     | did not find any defunct processes belonging to 1981273
[2026-03-05 19:59:50] 2026-03-05 18:59:20,201 | INFO     | did not find any defunct processes belonging to 1981273
[2026-03-05 19:59:50] 2026-03-05 18:59:20,202 | INFO     | ready for new job
[2026-03-05 19:59:50] 2026-03-05 18:59:20,202 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 19:59:50] 2026-03-05 18:59:20,202 | INFO     | **************************************
[2026-03-05 19:59:50] 2026-03-05 18:59:20,202 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 19:59:50] 2026-03-05 18:59:20,202 | INFO     | **************************************
[2026-03-05 19:59:50] 2026-03-05 18:59:20,202 | INFO     | 
[2026-03-05 19:59:50] 2026-03-05 18:59:20,203 | INFO     | architecture information:
[2026-03-05 19:59:50] 2026-03-05 18:59:20,203 | INFO     | executing command: cat /etc/os-release
[2026-03-05 19:59:50] 2026-03-05 18:59:20,218 | INFO     | cat /etc/os-release:
[2026-03-05 19:59:50] NAME="CentOS Linux"
[2026-03-05 19:59:50] VERSION="7 (Core)"
[2026-03-05 19:59:50] ID="centos"
[2026-03-05 19:59:50] ID_LIKE="rhel fedora"
[2026-03-05 19:59:50] VERSION_ID="7"
[2026-03-05 19:59:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 19:59:50] ANSI_COLOR="0;31"
[2026-03-05 19:59:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 19:59:50] HOME_URL="https://www.centos.org/"
[2026-03-05 19:59:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 19:59:50] 
[2026-03-05 19:59:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 19:59:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 19:59:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 19:59:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 19:59:50] 
[2026-03-05 19:59:50] 2026-03-05 18:59:20,218 | INFO     | **************************************
[2026-03-05 19:59:50] 2026-03-05 18:59:20,721 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-05 19:59:50] 2026-03-05 18:59:20,740 | INFO     | sufficient remaining disk space (231133413376 B)
[2026-03-05 19:59:50] 2026-03-05 18:59:20,740 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 19:59:50] 2026-03-05 18:59:20,741 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 19:59:50] 2026-03-05 18:59:20,741 | INFO     | update_server=False
[2026-03-05 19:59:50] 2026-03-05 18:59:20,741 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 19:59:50] 2026-03-05 18:59:20,741 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 19:59:50] 2026-03-05 18:59:20,840 | INFO     | all data control threads have been joined
[2026-03-05 19:59:50] 2026-03-05 18:59:20,852 | INFO     | all payload control threads have been joined
[2026-03-05 19:59:50] 2026-03-05 18:59:21,125 | INFO     | job.realtimelogging is not enabled
[2026-03-05 19:59:50] 2026-03-05 18:59:21,546 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 19:59:50] 2026-03-05 18:59:21,676 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 19:59:50] 2026-03-05 18:59:21,676 | INFO     | aborting loop
[2026-03-05 19:59:50] 2026-03-05 18:59:21,746 | INFO     | [job] retrieve thread has finished
[2026-03-05 19:59:50] 2026-03-05 18:59:21,747 | INFO     | [job] queue monitor thread has finished
[2026-03-05 19:59:50] 2026-03-05 18:59:21,846 | INFO     | [data] control thread has finished
[2026-03-05 19:59:50] 2026-03-05 18:59:21,857 | INFO     | [payload] control thread has finished
[2026-03-05 19:59:50] 2026-03-05 18:59:22,077 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 19:59:50] 2026-03-05 18:59:22,130 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 19:59:50] 2026-03-05 18:59:22,180 | INFO     | [job] validate thread has finished
[2026-03-05 19:59:50] 2026-03-05 18:59:22,196 | INFO     | all job control threads have been joined
[2026-03-05 19:59:50] 2026-03-05 18:59:22,319 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 19:59:50] 2026-03-05 18:59:22,375 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 19:59:50] 2026-03-05 18:59:22,526 | INFO     | [data] copytool_in thread has finished
[2026-03-05 19:59:50] 2026-03-05 18:59:22,634 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 19:59:50] 2026-03-05 18:59:22,682 | INFO     | [job] job monitor thread has finished
[2026-03-05 19:59:50] 2026-03-05 18:59:23,070 | INFO     | [payload] validate_post thread has finished
[2026-03-05 19:59:50] 2026-03-05 18:59:23,185 | INFO     | [payload] failed_post thread has finished
[2026-03-05 19:59:50] 2026-03-05 18:59:23,202 | INFO     | [job] control thread has finished
[2026-03-05 19:59:50] 2026-03-05 18:59:23,552 | INFO     | [data] copytool_out thread has finished
[2026-03-05 19:59:50] 2026-03-05 18:59:26,084 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 19:59:50] 2026-03-05 18:59:32,051 | INFO     | [monitor] cgroup control has ended
[2026-03-05 19:59:50] 2026-03-05 18:59:34,112 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140038040958784)>', '<ExcThread(monitor, started 140037249287936)>']
[2026-03-05 19:59:50] 2026-03-05 18:59:39,130 | INFO     | all workflow threads have been joined
[2026-03-05 19:59:50] 2026-03-05 18:59:39,131 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 19:59:50] 2026-03-05 18:59:39,132 | INFO     | traces error code: 0
[2026-03-05 19:59:50] 2026-03-05 18:59:39,132 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 19:59:50] 2026-03-05 18:59:50,396 | INFO     | PID=1976767 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-05 19:59:50] 2026-03-05 18:59:50,396 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 19:59:50] 2026-03-05 18:59:50,396 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 19:59:50] 2026-03-05 18:59:50,397 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 19:59:50] 2026-03-05 18:59:50,397 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 19:59:50] 2026-03-05 18:59:50,397 | INFO     | [monitor] control thread has ended
[2026-03-05 19:59:50] 2026-03-05 18:59:50,473 [wrapper] ==== pilot stdout END ====
[2026-03-05 19:59:50] 2026-03-05 18:59:50,477 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 19:59:50] 2026-03-05 18:59:50,481 [wrapper] pilotpid: 1976767
[2026-03-05 19:59:50] 2026-03-05 18:59:50,485 [wrapper] Pilot exit status: 0
[2026-03-05 19:59:50] 2026-03-05 18:59:50,498 [wrapper] pandaids: 7038553126
[2026-03-05 19:59:50] 2026-03-05 18:59:50,520 [wrapper] cleanup supervisor_pilot 1986437 1976768
[2026-03-05 19:59:50] 2026-03-05 18:59:50,524 [wrapper] Test setup, not cleaning
[2026-03-05 19:59:50] 2026-03-05 18:59:50,528 [wrapper] apfmon messages muted
[2026-03-05 19:59:50] 2026-03-05 18:59:50,532 [wrapper] ==== wrapper stdout END ====
[2026-03-05 19:59:50] 2026-03-05 18:59:50,536 [wrapper] ==== wrapper stderr END ====
[2026-03-05 19:59:50]  *** Error codes and diagnostics ***
[2026-03-05 19:59:50]     "exeErrorCode": 0,
[2026-03-05 19:59:50]     "exeErrorDiag": "",
[2026-03-05 19:59:50]     "pilotErrorCode": 0,
[2026-03-05 19:59:50]     "pilotErrorDiag": "",
[2026-03-05 19:59:50]  *** Listing of results directory ***
[2026-03-05 19:59:50] total 619368
[2026-03-05 19:59:50] -rw-r--r-- 1 boinc boinc    584627 Mar  5 03:30 pilot3.tar.gz
[2026-03-05 19:59:50] -rwx------ 1 boinc boinc     36322 Mar  5 03:31 runpilot2-wrapper.sh
[2026-03-05 19:59:50] -rw-r--r-- 1 boinc boinc      5111 Mar  5 03:32 queuedata.json
[2026-03-05 19:59:50] -rw-r--r-- 1 boinc boinc       100 Mar  5 18:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 19:59:50] -rwxr-xr-x 1 boinc boinc      7986 Mar  5 18:51 run_atlas
[2026-03-05 19:59:50] -rw-r--r-- 1 boinc boinc       105 Mar  5 18:51 job.xml
[2026-03-05 19:59:50] -rw-r--r-- 2 boinc boinc 440293491 Mar  5 18:51 EVNT.46701403._002108.pool.root.1
[2026-03-05 19:59:50] -rw-r--r-- 2 boinc boinc    597959 Mar  5 18:51 input.tar.gz
[2026-03-05 19:59:50] -rw-r--r-- 2 boinc boinc     15845 Mar  5 18:51 start_atlas.sh
[2026-03-05 19:59:50] drwxrwx--x 2 boinc boinc      4096 Mar  5 18:51 shared
[2026-03-05 19:59:50] -rw-r--r-- 1 boinc boinc         0 Mar  5 18:51 boinc_setup_complete
[2026-03-05 19:59:50] -rw-r--r-- 1 boinc boinc      6376 Mar  5 18:51 init_data.xml
[2026-03-05 19:59:50] -rw-r--r-- 1 boinc boinc         0 Mar  5 18:51 boinc_lockfile
[2026-03-05 19:59:50] -rw-r--r-- 1 boinc boinc      2569 Mar  5 18:51 pandaJob.out
[2026-03-05 19:59:50] -rw------- 1 boinc boinc    998462 Mar  5 18:51 agis_schedconf.cvmfs.json
[2026-03-05 19:59:50] -rw------- 1 boinc boinc   1521291 Mar  5 18:51 agis_ddmendpoints.agis.ALL.json
[2026-03-05 19:59:50] -rw------- 1 boinc boinc       427 Mar  5 18:51 workernode_map.json
[2026-03-05 19:59:50] drwx------ 5 boinc boinc      4096 Mar  5 18:51 pilot3
[2026-03-05 19:59:50] -rw------- 1 boinc boinc 188311459 Mar  5 19:58 HITS.48955015._003156.pool.root.1
[2026-03-05 19:59:50] -rw-r--r-- 1 boinc boinc       530 Mar  5 19:59 boinc_task_state.xml
[2026-03-05 19:59:50] -rw------- 1 boinc boinc      1018 Mar  5 19:59 memory_monitor_summary.json
[2026-03-05 19:59:50] -rw------- 1 boinc boinc    248301 Mar  5 19:59 log.48955015._003156.job.log.tgz.1
[2026-03-05 19:59:50] -rw------- 1 boinc boinc      6315 Mar  5 19:59 heartbeat.json
[2026-03-05 19:59:50] -rw-r--r-- 1 boinc boinc      8192 Mar  5 19:59 boinc_mmap_file
[2026-03-05 19:59:50] -rw-r--r-- 1 boinc boinc        27 Mar  5 19:59 wrapper_checkpoint.txt
[2026-03-05 19:59:50] -rw------- 1 boinc boinc       747 Mar  5 19:59 pilotlog.txt
[2026-03-05 19:59:50] -rw------- 1 boinc boinc        95 Mar  5 19:59 pilot_heartbeat.json
[2026-03-05 19:59:50] -rw------- 1 boinc boinc    606393 Mar  5 19:59 log.48955015._003156.job.log.1
[2026-03-05 19:59:50] -rw------- 1 boinc boinc       357 Mar  5 19:59 output.list
[2026-03-05 19:59:50] -rw-r--r-- 1 boinc boinc       620 Mar  5 19:59 runtime_log
[2026-03-05 19:59:50] -rw------- 1 boinc boinc    870400 Mar  5 19:59 result.tar.gz
[2026-03-05 19:59:50] -rw-r--r-- 1 boinc boinc      8896 Mar  5 19:59 runtime_log.err
[2026-03-05 19:59:50] -rw------- 1 boinc boinc       657 Mar  5 19:59 ngJKDmafDI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmGZKLDmgd21dn.diag
[2026-03-05 19:59:50] -rw-r--r-- 1 boinc boinc     10175 Mar  5 19:59 stderr.txt
[2026-03-05 19:59:50] HITS file was successfully produced:
[2026-03-05 19:59:50] -rw------- 1 boinc boinc 188311459 Mar  5 19:58 shared/HITS.pool.root.1
[2026-03-05 19:59:50]  *** Contents of shared directory: ***
[2026-03-05 19:59:50] total 615332
[2026-03-05 19:59:50] -rw-r--r-- 2 boinc boinc 440293491 Mar  5 18:51 ATLAS.root_0
[2026-03-05 19:59:50] -rw-r--r-- 2 boinc boinc    597959 Mar  5 18:51 input.tar.gz
[2026-03-05 19:59:50] -rw-r--r-- 2 boinc boinc     15845 Mar  5 18:51 start_atlas.sh
[2026-03-05 19:59:50] -rw------- 1 boinc boinc 188311459 Mar  5 19:58 HITS.pool.root.1
[2026-03-05 19:59:50] -rw------- 1 boinc boinc    870400 Mar  5 19:59 result.tar.gz
19:59:52 (1972651): run_atlas exited; CPU time 15297.252599
19:59:52 (1972651): called boinc_finish(0)

</stderr_txt>
]]>

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