Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:59:39 (1345333): wrapper (7.7.26015): starting
01:59:39 (1345333): wrapper: running run_atlas (--nthreads 4)
[2026-03-06 01:59:39] Arguments: --nthreads 4
[2026-03-06 01:59:39] Threads: 4
[2026-03-06 01:59:39] Checking for CVMFS
[2026-03-06 01:59:39] No cvmfs_config command found, will try listing directly
[2026-03-06 01:59:39] CVMFS is ok
[2026-03-06 01:59:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-06 01:59:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-06 01:59:39] Further information can be found at the LHC@home message board.
[2026-03-06 01:59:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-06 01:59:39] Checking for apptainer binary...
[2026-03-06 01:59:39] which: no apptainer in ((null))
[2026-03-06 01:59:39] apptainer is not installed, using version from CVMFS
[2026-03-06 01:59:39] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-06 01:59:39] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot244/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut21.grid.cesnet.cz
[2026-03-06 01:59:39] apptainer works
[2026-03-06 01:59:39] Set ATHENA_PROC_NUMBER=4
[2026-03-06 01:59:39] Set ATHENA_CORE_NUMBER=4
[2026-03-06 01:59:39] Starting ATLAS job with PandaID=7038531712
[2026-03-06 01:59:39] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot244/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-06 03:17:09]  *** The last 200 lines of the pilot log: ***
[2026-03-06 03:17:09]  guid=65cdb631-8b85-402d-a723-257c05bfab16
[2026-03-06 03:17:09]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-06 03:17:09]  is_altstaged=None
[2026-03-06 03:17:09]  is_tar=False
[2026-03-06 03:17:09]  lfn=log.48955006._001703.job.log.tgz.1
[2026-03-06 03:17:09]  mtime=0
[2026-03-06 03:17:09]  protocol_id=None
[2026-03-06 03:17:09]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-06 03:17:09]  replicas=None
[2026-03-06 03:17:09]  scope=mc23_13p6TeV
[2026-03-06 03:17:09]  status=None
[2026-03-06 03:17:09]  status_code=0
[2026-03-06 03:17:09]  storage_token=
[2026-03-06 03:17:09]  surl=/var/lib/boinc/var/slot244/slots/0/PanDA_Pilot-7038531712/log.48955006._001703.job.log.tgz.1
[2026-03-06 03:17:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/95/88/log.48955006._001703.job.log.tgz.1
[2026-03-06 03:17:09]  workdir=None
[2026-03-06 03:17:09] ]
[2026-03-06 03:17:09] 2026-03-06 02:16:20,322 | INFO     | transferring file log.48955006._001703.job.log.tgz.1 from /var/lib/boinc/var/slot244/slots/0/PanDA_Pilot-7038531712/log.48955006._001703.job.log.tgz.1 to /var/lib/
[2026-03-06 03:17:09] 2026-03-06 02:16:20,323 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot244/slots/0/PanDA_Pilot-7038531712/log.48955006._001703.job.log.tgz.1 /var/lib/boinc/var/slot244/slots/0/
[2026-03-06 03:17:09] 2026-03-06 02:16:20,340 | INFO     | adding to output.list: log.48955006._001703.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/95/88/log.48955006._001703.job.log.tg
[2026-03-06 03:17:09] 2026-03-06 02:16:20,341 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-06 03:17:09] 2026-03-06 02:16:20,341 | INFO     | summary of transferred files:
[2026-03-06 03:17:09] 2026-03-06 02:16:20,341 | INFO     |  -- lfn=log.48955006._001703.job.log.tgz.1, status_code=0, status=transferred
[2026-03-06 03:17:09] 2026-03-06 02:16:20,341 | INFO     | stage-out finished correctly
[2026-03-06 03:17:09] 2026-03-06 02:16:20,394 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-06 03:17:09] 2026-03-06 02:16:22,072 | INFO     | time since job start (4588s) is within the limit (349056.0s)
[2026-03-06 03:17:09] 2026-03-06 02:16:22,240 | INFO     | monitor loop #333: job 0:7038531712 is in state 'finished'
[2026-03-06 03:17:09] 2026-03-06 02:16:22,240 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-06 03:17:09] 2026-03-06 02:16:22,804 | INFO     | job 7038531712 has state=finished
[2026-03-06 03:17:09] 2026-03-06 02:16:22,804 | INFO     | preparing for final server update for job 7038531712 in state='finished'
[2026-03-06 03:17:09] 2026-03-06 02:16:22,804 | INFO     | reading metadata from: /var/lib/boinc/var/slot244/slots/0/PanDA_Pilot-7038531712/jobReport.json
[2026-03-06 03:17:09] 2026-03-06 02:16:22,806 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot244/slots/0/workernode_map.json
[2026-03-06 03:17:09] 2026-03-06 02:16:22,806 | INFO     | this job has now completed (state=finished)
[2026-03-06 03:17:09] 2026-03-06 02:16:22,806 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-06 03:17:09] 2026-03-06 02:16:22,806 | INFO     | log transfer has been attempted: DONE
[2026-03-06 03:17:09] 2026-03-06 02:16:22,806 | INFO     | job 7038531712 has finished - writing final server update
[2026-03-06 03:17:09] 2026-03-06 02:16:22,806 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_499902/.job.ad'
[2026-03-06 03:17:09] 2026-03-06 02:16:22,806 | INFO     | total number of processed events: 400 (read)
[2026-03-06 03:17:09] 2026-03-06 02:16:22,824 | INFO     | using path: /var/lib/boinc/var/slot244/slots/0/PanDA_Pilot-7038531712/memory_monitor_summary.json (trf name=prmon)
[2026-03-06 03:17:09] 2026-03-06 02:16:22,824 | INFO     | extracted standard info from prmon json
[2026-03-06 03:17:09] 2026-03-06 02:16:22,824 | INFO     | extracted standard memory fields from prmon json
[2026-03-06 03:17:09] 2026-03-06 02:16:22,825 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-06 03:17:09] 2026-03-06 02:16:22,825 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-06 03:17:09] 2026-03-06 02:16:22,825 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-06 03:17:09] 2026-03-06 02:16:22,826 | INFO     | fitting pss+swap vs Time
[2026-03-06 03:17:09] 2026-03-06 02:16:22,826 | INFO     | sum of square deviations: 97479037.0
[2026-03-06 03:17:09] 2026-03-06 02:16:22,826 | INFO     | sum of deviations: 596714779.5000001
[2026-03-06 03:17:09] 2026-03-06 02:16:22,826 | INFO     | mean x: 1772761167.5
[2026-03-06 03:17:09] 2026-03-06 02:16:22,826 | INFO     | mean y: 2320447.9264705884
[2026-03-06 03:17:09] 2026-03-06 02:16:22,826 | INFO     | intersect: -10849579834.704813
[2026-03-06 03:17:09] 2026-03-06 02:16:22,826 | INFO     | chi2: 0.00020033924200002896
[2026-03-06 03:17:09] 2026-03-06 02:16:22,826 | INFO     | current memory leak: 6.12 B/s (using 68 data points, chi2=0.00)
[2026-03-06 03:17:09] 2026-03-06 02:16:22,827 | INFO     | could have reported an average CPU frequency of 3561 MHz (6 samples)
[2026-03-06 03:17:09] 2026-03-06 02:16:22,827 | INFO     | ..............................
[2026-03-06 03:17:09] 2026-03-06 02:16:22,827 | INFO     | . Timing measurements:
[2026-03-06 03:17:09] 2026-03-06 02:16:22,827 | INFO     | . get job = 0 s
[2026-03-06 03:17:09] 2026-03-06 02:16:22,827 | INFO     | . initial setup = 6 s
[2026-03-06 03:17:09] 2026-03-06 02:16:22,827 | INFO     | . payload setup = 7 s
[2026-03-06 03:17:09] 2026-03-06 02:16:22,827 | INFO     | . stage-in = 0 s
[2026-03-06 03:17:09] 2026-03-06 02:16:22,827 | INFO     | . payload execution = 4562 s
[2026-03-06 03:17:09] 2026-03-06 02:16:22,827 | INFO     | . stage-out = 0 s
[2026-03-06 03:17:09] 2026-03-06 02:16:22,827 | INFO     | . log creation = 0 s
[2026-03-06 03:17:09] 2026-03-06 02:16:22,827 | INFO     | ..............................
[2026-03-06 03:17:09] 2026-03-06 02:16:22,876 | INFO     | 
[2026-03-06 03:17:09] 2026-03-06 02:16:22,876 | INFO     | job summary report
[2026-03-06 03:17:09] 2026-03-06 02:16:22,876 | INFO     | --------------------------------------------------
[2026-03-06 03:17:09] 2026-03-06 02:16:22,876 | INFO     | PanDA job id: 7038531712
[2026-03-06 03:17:09] 2026-03-06 02:16:22,876 | INFO     | task id: 48955006
[2026-03-06 03:17:09] 2026-03-06 02:16:22,876 | INFO     | errors: (none)
[2026-03-06 03:17:09] 2026-03-06 02:16:22,876 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-06 03:17:09] 2026-03-06 02:16:22,876 | INFO     | pilot state: finished 
[2026-03-06 03:17:09] 2026-03-06 02:16:22,876 | INFO     | transexitcode: 0
[2026-03-06 03:17:09] 2026-03-06 02:16:22,876 | INFO     | exeerrorcode: 0
[2026-03-06 03:17:09] 2026-03-06 02:16:22,877 | INFO     | exeerrordiag: 
[2026-03-06 03:17:09] 2026-03-06 02:16:22,877 | INFO     | exitcode: 0
[2026-03-06 03:17:09] 2026-03-06 02:16:22,877 | INFO     | exitmsg: OK
[2026-03-06 03:17:09] 2026-03-06 02:16:22,877 | INFO     | cpuconsumptiontime: 17381 s
[2026-03-06 03:17:09] 2026-03-06 02:16:22,877 | INFO     | nevents: 400
[2026-03-06 03:17:09] 2026-03-06 02:16:22,877 | INFO     | neventsw: 0
[2026-03-06 03:17:09] 2026-03-06 02:16:22,877 | INFO     | pid: 1357475
[2026-03-06 03:17:09] 2026-03-06 02:16:22,877 | INFO     | pgrp: 1357475
[2026-03-06 03:17:09] 2026-03-06 02:16:22,877 | INFO     | corecount: 4
[2026-03-06 03:17:09] 2026-03-06 02:16:22,877 | INFO     | event service: False
[2026-03-06 03:17:09] 2026-03-06 02:16:22,877 | INFO     | sizes: {0: 2295807, 11: 2295807, 4573: 2322032, 4574: 2331110, 4577: 2331248}
[2026-03-06 03:17:09] 2026-03-06 02:16:22,877 | INFO     | --------------------------------------------------
[2026-03-06 03:17:09] 2026-03-06 02:16:22,877 | INFO     | 
[2026-03-06 03:17:09] 2026-03-06 02:16:22,877 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot244/slots/0
[2026-03-06 03:17:09] 2026-03-06 02:16:22,896 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-06 03:17:09] 2026-03-06 02:16:22,896 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-06 03:17:09] 2026-03-06 02:16:22,896 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-06 03:17:09] 2026-03-06 02:16:22,896 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-06 03:17:09] 2026-03-06 02:16:22,896 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-06 03:17:09] 2026-03-06 02:16:22,896 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-06 03:17:09] 2026-03-06 02:16:22,896 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-06 03:17:09] 2026-03-06 02:16:22,896 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-06 03:17:09] 2026-03-06 02:16:22,896 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-06 03:17:09] 2026-03-06 02:16:22,896 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-06 03:17:09] 2026-03-06 02:16:22,896 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-06 03:17:09] 2026-03-06 02:16:22,896 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-06 03:17:09] 2026-03-06 02:16:22,896 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-06 03:17:09] 2026-03-06 02:16:22,896 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-06 03:17:09] 2026-03-06 02:16:22,896 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-06 03:17:09] 2026-03-06 02:16:22,896 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-06 03:17:09] 2026-03-06 02:16:22,896 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-06 03:17:09] 2026-03-06 02:16:22,896 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-06 03:17:09] 2026-03-06 02:16:22,896 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-06 03:17:09] 2026-03-06 02:16:22,896 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-06 03:17:09] 2026-03-06 02:16:22,896 | INFO     | job 7038531712 has completed (purged errors)
[2026-03-06 03:17:09] 2026-03-06 02:16:22,897 | INFO     | overall cleanup function is called
[2026-03-06 03:17:09] 2026-03-06 02:16:23,904 | INFO     | --- collectZombieJob: --- 10, [1357475]
[2026-03-06 03:17:09] 2026-03-06 02:16:23,904 | INFO     | zombie collector waiting for pid 1357475
[2026-03-06 03:17:09] 2026-03-06 02:16:23,904 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-06 03:17:09] 2026-03-06 02:16:23,904 | INFO     | collected zombie processes
[2026-03-06 03:17:09] 2026-03-06 02:16:23,904 | INFO     | will attempt to kill all subprocesses of pid=1357475
[2026-03-06 03:17:09] 2026-03-06 02:16:24,415 | INFO     | process IDs to be killed: [1357475] (in reverse order)
[2026-03-06 03:17:09] 2026-03-06 02:16:24,639 | WARNING  | found no corresponding commands to process id(s)
[2026-03-06 03:17:09] 2026-03-06 02:16:24,640 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-06 03:17:09] 2026-03-06 02:16:24,672 | INFO     | did not find any defunct processes belonging to 1357475
[2026-03-06 03:17:09] 2026-03-06 02:16:24,703 | INFO     | did not find any defunct processes belonging to 1357475
[2026-03-06 03:17:09] 2026-03-06 02:16:24,704 | INFO     | ready for new job
[2026-03-06 03:17:09] 2026-03-06 02:16:24,704 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-06 03:17:09] 2026-03-06 02:16:24,705 | INFO     | **************************************
[2026-03-06 03:17:09] 2026-03-06 02:16:24,705 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-06 03:17:09] 2026-03-06 02:16:24,706 | INFO     | **************************************
[2026-03-06 03:17:09] 2026-03-06 02:16:24,706 | INFO     | 
[2026-03-06 03:17:09] 2026-03-06 02:16:24,712 | INFO     | architecture information:
[2026-03-06 03:17:09] 2026-03-06 02:16:24,712 | INFO     | executing command: cat /etc/os-release
[2026-03-06 03:17:09] 2026-03-06 02:16:24,727 | INFO     | cat /etc/os-release:
[2026-03-06 03:17:09] NAME="CentOS Linux"
[2026-03-06 03:17:09] VERSION="7 (Core)"
[2026-03-06 03:17:09] ID="centos"
[2026-03-06 03:17:09] ID_LIKE="rhel fedora"
[2026-03-06 03:17:09] VERSION_ID="7"
[2026-03-06 03:17:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-06 03:17:09] ANSI_COLOR="0;31"
[2026-03-06 03:17:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-06 03:17:09] HOME_URL="https://www.centos.org/"
[2026-03-06 03:17:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-06 03:17:09] 
[2026-03-06 03:17:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-06 03:17:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-06 03:17:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-06 03:17:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-06 03:17:09] 
[2026-03-06 03:17:09] 2026-03-06 02:16:24,727 | INFO     | **************************************
[2026-03-06 03:17:09] 2026-03-06 02:16:25,234 | INFO     | executing command: df -mP /var/lib/boinc/var/slot244/slots/0
[2026-03-06 03:17:09] 2026-03-06 02:16:25,249 | INFO     | sufficient remaining disk space (19862126592 B)
[2026-03-06 03:17:09] 2026-03-06 02:16:25,250 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-06 03:17:09] 2026-03-06 02:16:25,250 | INFO     | current server update state: UPDATING_FINAL
[2026-03-06 03:17:09] 2026-03-06 02:16:25,250 | INFO     | update_server=False
[2026-03-06 03:17:09] 2026-03-06 02:16:25,250 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-06 03:17:09] 2026-03-06 02:16:25,670 | INFO     | all payload control threads have been joined
[2026-03-06 03:17:09] 2026-03-06 02:16:25,748 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-06 03:17:09] 2026-03-06 02:16:25,748 | INFO     | aborting loop
[2026-03-06 03:17:09] 2026-03-06 02:16:25,769 | INFO     | all data control threads have been joined
[2026-03-06 03:17:09] 2026-03-06 02:16:25,901 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-06 03:17:09] 2026-03-06 02:16:25,974 | INFO     | job.realtimelogging is not enabled
[2026-03-06 03:17:09] 2026-03-06 02:16:26,165 | INFO     | all job control threads have been joined
[2026-03-06 03:17:09] 2026-03-06 02:16:26,255 | INFO     | [job] retrieve thread has finished
[2026-03-06 03:17:09] 2026-03-06 02:16:26,453 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-06 03:17:09] 2026-03-06 02:16:26,676 | INFO     | [payload] control thread has finished
[2026-03-06 03:17:09] 2026-03-06 02:16:26,753 | INFO     | [job] job monitor thread has finished
[2026-03-06 03:17:09] 2026-03-06 02:16:26,775 | INFO     | [data] control thread has finished
[2026-03-06 03:17:09] 2026-03-06 02:16:26,788 | INFO     | [job] validate thread has finished
[2026-03-06 03:17:09] 2026-03-06 02:16:26,930 | INFO     | [payload] failed_post thread has finished
[2026-03-06 03:17:09] 2026-03-06 02:16:26,980 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-06 03:17:09] 2026-03-06 02:16:27,063 | INFO     | [payload] validate_pre thread has finished
[2026-03-06 03:17:09] 2026-03-06 02:16:27,164 | INFO     | [data] copytool_in thread has finished
[2026-03-06 03:17:09] 2026-03-06 02:16:27,171 | INFO     | [job] control thread has finished
[2026-03-06 03:17:09] 2026-03-06 02:16:27,184 | INFO     | [payload] validate_post thread has finished
[2026-03-06 03:17:09] 2026-03-06 02:16:27,328 | INFO     | [job] create_data_payload thread has finished
[2026-03-06 03:17:09] 2026-03-06 02:16:27,753 | INFO     | [payload] execute_payloads thread has finished
[2026-03-06 03:17:09] 2026-03-06 02:16:27,886 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-06 03:17:09] 2026-03-06 02:16:27,906 | INFO     | [data] copytool_out thread has finished
[2026-03-06 03:17:09] 2026-03-06 02:16:28,891 | INFO     | [job] queue monitor thread has finished
[2026-03-06 03:17:09] 2026-03-06 02:16:30,458 | INFO     | [data] queue_monitor thread has finished
[2026-03-06 03:17:09] 2026-03-06 02:16:54,149 | INFO     | 4595s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-03-06 03:17:09] 2026-03-06 02:16:55,752 | INFO     | PID=1349958 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-06 03:17:09] 2026-03-06 02:16:55,752 | INFO     | .. there are 49 such processes running
[2026-03-06 03:17:09] 2026-03-06 02:16:55,753 | INFO     | found 0 job(s) in 20 queues
[2026-03-06 03:17:09] 2026-03-06 02:16:55,753 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-06 03:17:09] 2026-03-06 02:16:55,753 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-06 03:17:09] 2026-03-06 02:17:01,948 | INFO     | [monitor] cgroup control has ended
[2026-03-06 03:17:09] 2026-03-06 02:17:03,835 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22364900349760)>', '<ExcThread(monitor, started 22364655191808)>']
[2026-03-06 03:17:09] 2026-03-06 02:17:04,799 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-06 03:17:09] 2026-03-06 02:17:04,800 | INFO     | [monitor] control thread has ended
[2026-03-06 03:17:09] 2026-03-06 02:17:08,860 | INFO     | all workflow threads have been joined
[2026-03-06 03:17:09] 2026-03-06 02:17:08,860 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-06 03:17:09] 2026-03-06 02:17:08,860 | INFO     | traces error code: 0
[2026-03-06 03:17:09] 2026-03-06 02:17:08,860 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-06 03:17:09] 2026-03-06 02:17:09,077 [wrapper] ==== pilot stdout END ====
[2026-03-06 03:17:09] 2026-03-06 02:17:09,079 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-06 03:17:09] 2026-03-06 02:17:09,081 [wrapper] pilotpid: 1349958
[2026-03-06 03:17:09] 2026-03-06 02:17:09,082 [wrapper] Pilot exit status: 0
[2026-03-06 03:17:09] 2026-03-06 02:17:09,089 [wrapper] pandaids: 7038531712
[2026-03-06 03:17:09] 2026-03-06 02:17:09,218 [wrapper] cleanup supervisor_pilot 2064575 1349959
[2026-03-06 03:17:09] 2026-03-06 02:17:09,222 [wrapper] Test setup, not cleaning
[2026-03-06 03:17:09] 2026-03-06 02:17:09,225 [wrapper] apfmon messages muted
[2026-03-06 03:17:09] 2026-03-06 02:17:09,227 [wrapper] ==== wrapper stdout END ====
[2026-03-06 03:17:09] 2026-03-06 02:17:09,229 [wrapper] ==== wrapper stderr END ====
[2026-03-06 03:17:09]  *** Error codes and diagnostics ***
[2026-03-06 03:17:09]     "exeErrorCode": 0,
[2026-03-06 03:17:09]     "exeErrorDiag": "",
[2026-03-06 03:17:09]     "pilotErrorCode": 0,
[2026-03-06 03:17:09]     "pilotErrorDiag": "",
[2026-03-06 03:17:09]  *** Listing of results directory ***
[2026-03-06 03:17:09] total 613184
[2026-03-06 03:17:09] -rw-r--r--. 1 boinc boinc    584627 Mar  5 01:15 pilot3.tar.gz
[2026-03-06 03:17:09] -rw-r--r--. 1 boinc boinc      5111 Mar  5 01:15 queuedata.json
[2026-03-06 03:17:09] -rwx------. 1 boinc boinc     36322 Mar  5 01:16 runpilot2-wrapper.sh
[2026-03-06 03:17:09] -rw-r--r--. 1 boinc boinc       100 Mar  6 01:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-06 03:17:09] -rwxr-xr-x. 1 boinc boinc      7986 Mar  6 01:59 run_atlas
[2026-03-06 03:17:09] -rw-r--r--. 1 boinc boinc       105 Mar  6 01:59 job.xml
[2026-03-06 03:17:09] -rw-r--r--. 1 boinc boinc      6708 Mar  6 01:59 init_data.xml
[2026-03-06 03:17:09] -rw-r--r--. 2 boinc boinc 443612617 Mar  6 01:59 EVNT.46701403._000035.pool.root.1
[2026-03-06 03:17:09] -rw-r--r--. 2 boinc boinc     15845 Mar  6 01:59 start_atlas.sh
[2026-03-06 03:17:09] drwxrwx--x. 2 boinc boinc      4096 Mar  6 01:59 shared
[2026-03-06 03:17:09] -rw-r--r--. 2 boinc boinc    597940 Mar  6 01:59 input.tar.gz
[2026-03-06 03:17:09] -rw-r--r--. 1 boinc boinc         0 Mar  6 01:59 boinc_lockfile
[2026-03-06 03:17:09] -rw-r--r--. 1 boinc boinc      2559 Mar  6 01:59 pandaJob.out
[2026-03-06 03:17:09] -rw-------. 1 boinc boinc    998560 Mar  6 01:59 agis_schedconf.cvmfs.json
[2026-03-06 03:17:09] -rw-------. 1 boinc boinc   1521291 Mar  6 01:59 agis_ddmendpoints.agis.ALL.json
[2026-03-06 03:17:09] -rw-------. 1 boinc boinc       443 Mar  6 01:59 workernode_map.json
[2026-03-06 03:17:09] drwx------. 5 boinc boinc      4096 Mar  6 01:59 pilot3
[2026-03-06 03:17:09] -rw-------. 1 boinc boinc 178499872 Mar  6 03:15 HITS.48955006._001703.pool.root.1
[2026-03-06 03:17:09] -rw-r--r--. 1 boinc boinc       530 Mar  6 03:16 boinc_task_state.xml
[2026-03-06 03:17:09] -rw-------. 1 boinc boinc      1027 Mar  6 03:16 memory_monitor_summary.json
[2026-03-06 03:17:09] -rw-------. 1 boinc boinc    252280 Mar  6 03:16 log.48955006._001703.job.log.tgz.1
[2026-03-06 03:17:09] -rw-------. 1 boinc boinc      6358 Mar  6 03:16 heartbeat.json
[2026-03-06 03:17:09] -rw-------. 1 boinc boinc        95 Mar  6 03:16 pilot_heartbeat.json
[2026-03-06 03:17:09] -rw-r--r--. 1 boinc boinc      8192 Mar  6 03:17 boinc_mmap_file
[2026-03-06 03:17:09] -rw-r--r--. 1 boinc boinc        27 Mar  6 03:17 wrapper_checkpoint.txt
[2026-03-06 03:17:09] -rw-------. 1 boinc boinc      5017 Mar  6 03:17 pilotlog.txt
[2026-03-06 03:17:09] -rw-------. 1 boinc boinc    675509 Mar  6 03:17 log.48955006._001703.job.log.1
[2026-03-06 03:17:09] -rw-------. 1 boinc boinc       357 Mar  6 03:17 output.list
[2026-03-06 03:17:09] -rw-r--r--. 1 boinc boinc       620 Mar  6 03:17 runtime_log
[2026-03-06 03:17:09] -rw-------. 1 boinc boinc    942080 Mar  6 03:17 result.tar.gz
[2026-03-06 03:17:09] -rw-r--r--. 1 boinc boinc      9221 Mar  6 03:17 runtime_log.err
[2026-03-06 03:17:09] -rw-------. 1 boinc boinc       663 Mar  6 03:17 LuxLDmuYBI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmaNMLDmN29Tdm.diag
[2026-03-06 03:17:09] -rw-r--r--. 1 boinc boinc     21241 Mar  6 03:17 stderr.txt
[2026-03-06 03:17:09] HITS file was successfully produced:
[2026-03-06 03:17:09] -rw-------. 1 boinc boinc 178499872 Mar  6 03:15 shared/HITS.pool.root.1
[2026-03-06 03:17:09]  *** Contents of shared directory: ***
[2026-03-06 03:17:09] total 609064
[2026-03-06 03:17:09] -rw-r--r--. 2 boinc boinc 443612617 Mar  6 01:59 ATLAS.root_0
[2026-03-06 03:17:09] -rw-r--r--. 2 boinc boinc     15845 Mar  6 01:59 start_atlas.sh
[2026-03-06 03:17:09] -rw-r--r--. 2 boinc boinc    597940 Mar  6 01:59 input.tar.gz
[2026-03-06 03:17:09] -rw-------. 1 boinc boinc 178499872 Mar  6 03:15 HITS.pool.root.1
[2026-03-06 03:17:09] -rw-------. 1 boinc boinc    942080 Mar  6 03:17 result.tar.gz
03:17:10 (1345333): run_atlas exited; CPU time 17563.160382
03:17:10 (1345333): called boinc_finish(0)

</stderr_txt>
]]>

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