Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:16:42 (2123175): wrapper (7.7.26015): starting
13:16:42 (2123175): wrapper: running run_atlas (--nthreads 4)
[2026-03-05 13:16:42] Arguments: --nthreads 4
[2026-03-05 13:16:42] Threads: 4
[2026-03-05 13:16:42] Checking for CVMFS
[2026-03-05 13:16:42] No cvmfs_config command found, will try listing directly
[2026-03-05 13:16:42] CVMFS is ok
[2026-03-05 13:16:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-05 13:16:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-05 13:16:42] Further information can be found at the LHC@home message board.
[2026-03-05 13:16:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 13:16:42] Checking for apptainer binary...
[2026-03-05 13:16:42] which: no apptainer in ((null))
[2026-03-05 13:16:42] apptainer is not installed, using version from CVMFS
[2026-03-05 13:16:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 13:16:42] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot80/slots/2/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz
[2026-03-05 13:16:42] apptainer works
[2026-03-05 13:16:42] Set ATHENA_PROC_NUMBER=4
[2026-03-05 13:16:42] Set ATHENA_CORE_NUMBER=4
[2026-03-05 13:16:42] Starting ATLAS job with PandaID=7038545744
[2026-03-05 13:16:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot80/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 14:35:09]  *** The last 200 lines of the pilot log: ***
[2026-03-05 14:35:09]  lfn=log.48955010._003362.job.log.tgz.1
[2026-03-05 14:35:09]  mtime=0
[2026-03-05 14:35:09]  protocol_id=None
[2026-03-05 14:35:09]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-05 14:35:09]  replicas=None
[2026-03-05 14:35:09]  scope=mc23_13p6TeV
[2026-03-05 14:35:09]  status=None
[2026-03-05 14:35:09]  status_code=0
[2026-03-05 14:35:09]  storage_token=
[2026-03-05 14:35:09]  surl=/var/lib/boinc/var/slot80/slots/2/PanDA_Pilot-7038545744/log.48955010._003362.job.log.tgz.1
[2026-03-05 14:35:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/23/b6/log.48955010._003362.job.log.tgz.1
[2026-03-05 14:35:09]  workdir=None
[2026-03-05 14:35:09] ]
[2026-03-05 14:35:09] 2026-03-05 13:34:07,288 | INFO     | transferring file log.48955010._003362.job.log.tgz.1 from /var/lib/boinc/var/slot80/slots/2/PanDA_Pilot-7038545744/log.48955010._003362.job.log.tgz.1 to /var/lib/b
[2026-03-05 14:35:09] 2026-03-05 13:34:07,288 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot80/slots/2/PanDA_Pilot-7038545744/log.48955010._003362.job.log.tgz.1 /var/lib/boinc/var/slot80/slots/2/lo
[2026-03-05 14:35:09] 2026-03-05 13:34:07,305 | INFO     | adding to output.list: log.48955010._003362.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/23/b6/log.48955010._003362.job.log.tg
[2026-03-05 14:35:09] 2026-03-05 13:34:07,306 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-05 14:35:09] 2026-03-05 13:34:07,306 | INFO     | summary of transferred files:
[2026-03-05 14:35:09] 2026-03-05 13:34:07,306 | INFO     |  -- lfn=log.48955010._003362.job.log.tgz.1, status_code=0, status=transferred
[2026-03-05 14:35:09] 2026-03-05 13:34:07,306 | INFO     | stage-out finished correctly
[2026-03-05 14:35:09] 2026-03-05 13:34:08,008 | INFO     | time since job start (4633s) is within the limit (349056.0s)
[2026-03-05 14:35:09] 2026-03-05 13:34:09,633 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-05 14:35:09] 2026-03-05 13:34:10,012 | INFO     | time since job start (4635s) is within the limit (349056.0s)
[2026-03-05 14:35:09] 2026-03-05 13:34:10,558 | WARNING  | process 2144736 can no longer be monitored (due to stat problems) - aborting
[2026-03-05 14:35:09] 2026-03-05 13:34:10,558 | INFO     | using path: /var/lib/boinc/var/slot80/slots/2/PanDA_Pilot-7038545744/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 14:35:09] 2026-03-05 13:34:10,666 | INFO     | job 7038545744 has state=finished
[2026-03-05 14:35:09] 2026-03-05 13:34:10,667 | INFO     | preparing for final server update for job 7038545744 in state='finished'
[2026-03-05 14:35:09] 2026-03-05 13:34:10,667 | INFO     | reading metadata from: /var/lib/boinc/var/slot80/slots/2/PanDA_Pilot-7038545744/jobReport.json
[2026-03-05 14:35:09] 2026-03-05 13:34:10,670 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot80/slots/2/workernode_map.json
[2026-03-05 14:35:09] 2026-03-05 13:34:10,671 | INFO     | this job has now completed (state=finished)
[2026-03-05 14:35:09] 2026-03-05 13:34:10,671 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-05 14:35:09] 2026-03-05 13:34:10,671 | INFO     | log transfer has been attempted: DONE
[2026-03-05 14:35:09] 2026-03-05 13:34:10,671 | INFO     | job 7038545744 has finished - writing final server update
[2026-03-05 14:35:09] 2026-03-05 13:34:10,671 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3073607/.job.ad'
[2026-03-05 14:35:09] 2026-03-05 13:34:10,671 | INFO     | total number of processed events: 400 (read)
[2026-03-05 14:35:09] 2026-03-05 13:34:10,691 | INFO     | using path: /var/lib/boinc/var/slot80/slots/2/PanDA_Pilot-7038545744/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 14:35:09] 2026-03-05 13:34:10,691 | INFO     | extracted standard info from prmon json
[2026-03-05 14:35:09] 2026-03-05 13:34:10,691 | INFO     | extracted standard memory fields from prmon json
[2026-03-05 14:35:09] 2026-03-05 13:34:10,692 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-05 14:35:09] 2026-03-05 13:34:10,692 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-05 14:35:09] 2026-03-05 13:34:10,692 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-05 14:35:09] 2026-03-05 13:34:10,693 | INFO     | fitting pss+swap vs Time
[2026-03-05 14:35:09] 2026-03-05 13:34:10,693 | INFO     | sum of square deviations: 101843770.0
[2026-03-05 14:35:09] 2026-03-05 13:34:10,693 | INFO     | sum of deviations: 401631441.99999994
[2026-03-05 14:35:09] 2026-03-05 13:34:10,693 | INFO     | mean x: 1772715416.0
[2026-03-05 14:35:09] 2026-03-05 13:34:10,693 | INFO     | mean y: 2321103.3333333335
[2026-03-05 14:35:09] 2026-03-05 13:34:10,693 | INFO     | intersect: -6988565514.313576
[2026-03-05 14:35:09] 2026-03-05 13:34:10,693 | INFO     | chi2: 0.0001620303373850729
[2026-03-05 14:35:09] 2026-03-05 13:34:10,693 | INFO     | current memory leak: 3.94 B/s (using 69 data points, chi2=0.00)
[2026-03-05 14:35:09] 2026-03-05 13:34:10,693 | INFO     | could have reported an average CPU frequency of 3584 MHz (6 samples)
[2026-03-05 14:35:09] 2026-03-05 13:34:10,694 | INFO     | ..............................
[2026-03-05 14:35:09] 2026-03-05 13:34:10,694 | INFO     | . Timing measurements:
[2026-03-05 14:35:09] 2026-03-05 13:34:10,694 | INFO     | . get job = 0 s
[2026-03-05 14:35:09] 2026-03-05 13:34:10,694 | INFO     | . initial setup = 5 s
[2026-03-05 14:35:09] 2026-03-05 13:34:10,694 | INFO     | . payload setup = 5 s
[2026-03-05 14:35:09] 2026-03-05 13:34:10,694 | INFO     | . stage-in = 0 s
[2026-03-05 14:35:09] 2026-03-05 13:34:10,694 | INFO     | . payload execution = 4610 s
[2026-03-05 14:35:09] 2026-03-05 13:34:10,694 | INFO     | . stage-out = 0 s
[2026-03-05 14:35:09] 2026-03-05 13:34:10,694 | INFO     | . log creation = 0 s
[2026-03-05 14:35:09] 2026-03-05 13:34:10,694 | INFO     | ..............................
[2026-03-05 14:35:09] 2026-03-05 13:34:11,006 | INFO     | number of running child processes to parent process 2144736: 1
[2026-03-05 14:35:09] 2026-03-05 13:34:11,006 | INFO     | maximum number of monitored processes: 6
[2026-03-05 14:35:09] 2026-03-05 13:34:11,007 | INFO     | aborting job monitoring since job object (job id=7038545744) has expired
[2026-03-05 14:35:09] 2026-03-05 13:34:11,122 | INFO     | 
[2026-03-05 14:35:09] 2026-03-05 13:34:11,123 | INFO     | job summary report
[2026-03-05 14:35:09] 2026-03-05 13:34:11,123 | INFO     | --------------------------------------------------
[2026-03-05 14:35:09] 2026-03-05 13:34:11,123 | INFO     | PanDA job id: 7038545744
[2026-03-05 14:35:09] 2026-03-05 13:34:11,123 | INFO     | task id: 48955010
[2026-03-05 14:35:09] 2026-03-05 13:34:11,123 | INFO     | errors: (none)
[2026-03-05 14:35:09] 2026-03-05 13:34:11,123 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-05 14:35:09] 2026-03-05 13:34:11,123 | INFO     | pilot state: finished 
[2026-03-05 14:35:09] 2026-03-05 13:34:11,123 | INFO     | transexitcode: 0
[2026-03-05 14:35:09] 2026-03-05 13:34:11,123 | INFO     | exeerrorcode: 0
[2026-03-05 14:35:09] 2026-03-05 13:34:11,123 | INFO     | exeerrordiag: 
[2026-03-05 14:35:09] 2026-03-05 13:34:11,123 | INFO     | exitcode: 0
[2026-03-05 14:35:09] 2026-03-05 13:34:11,123 | INFO     | exitmsg: OK
[2026-03-05 14:35:09] 2026-03-05 13:34:11,123 | INFO     | cpuconsumptiontime: 17639 s
[2026-03-05 14:35:09] 2026-03-05 13:34:11,123 | INFO     | nevents: 400
[2026-03-05 14:35:09] 2026-03-05 13:34:11,123 | INFO     | neventsw: 0
[2026-03-05 14:35:09] 2026-03-05 13:34:11,123 | INFO     | pid: 2144736
[2026-03-05 14:35:09] 2026-03-05 13:34:11,123 | INFO     | pgrp: 2144736
[2026-03-05 14:35:09] 2026-03-05 13:34:11,123 | INFO     | corecount: 4
[2026-03-05 14:35:09] 2026-03-05 13:34:11,123 | INFO     | event service: False
[2026-03-05 14:35:09] 2026-03-05 13:34:11,123 | INFO     | sizes: {0: 2294658, 1: 2295787, 11: 2295787, 4619: 2322013, 4621: 2331033, 4623: 2331089, 4624: 2331411}
[2026-03-05 14:35:09] 2026-03-05 13:34:11,124 | INFO     | --------------------------------------------------
[2026-03-05 14:35:09] 2026-03-05 13:34:11,124 | INFO     | 
[2026-03-05 14:35:09] 2026-03-05 13:34:11,124 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot80/slots/2
[2026-03-05 14:35:09] 2026-03-05 13:34:11,144 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-05 14:35:09] 2026-03-05 13:34:11,145 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-05 14:35:09] 2026-03-05 13:34:11,145 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-05 14:35:09] 2026-03-05 13:34:11,145 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-05 14:35:09] 2026-03-05 13:34:11,145 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-05 14:35:09] 2026-03-05 13:34:11,145 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-05 14:35:09] 2026-03-05 13:34:11,145 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-05 14:35:09] 2026-03-05 13:34:11,145 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-05 14:35:09] 2026-03-05 13:34:11,145 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-05 14:35:09] 2026-03-05 13:34:11,145 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-05 14:35:09] 2026-03-05 13:34:11,145 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-05 14:35:09] 2026-03-05 13:34:11,145 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-05 14:35:09] 2026-03-05 13:34:11,145 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-05 14:35:09] 2026-03-05 13:34:11,145 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-05 14:35:09] 2026-03-05 13:34:11,145 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-05 14:35:09] 2026-03-05 13:34:11,145 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-05 14:35:09] 2026-03-05 13:34:11,145 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-05 14:35:09] 2026-03-05 13:34:11,145 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-05 14:35:09] 2026-03-05 13:34:11,145 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-05 14:35:09] 2026-03-05 13:34:11,145 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-05 14:35:09] 2026-03-05 13:34:11,145 | INFO     | job 7038545744 has completed (purged errors)
[2026-03-05 14:35:09] 2026-03-05 13:34:11,145 | INFO     | overall cleanup function is called
[2026-03-05 14:35:09] 2026-03-05 13:34:11,629 | INFO     | PID=2131448 has CPU usage=13.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-05 14:35:09] 2026-03-05 13:34:11,629 | INFO     | .. there are 42 such processes running
[2026-03-05 14:35:09] 2026-03-05 13:34:12,153 | INFO     | --- collectZombieJob: --- 10, [2144736]
[2026-03-05 14:35:09] 2026-03-05 13:34:12,153 | INFO     | zombie collector waiting for pid 2144736
[2026-03-05 14:35:09] 2026-03-05 13:34:12,153 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 14:35:09] 2026-03-05 13:34:12,153 | INFO     | collected zombie processes
[2026-03-05 14:35:09] 2026-03-05 13:34:12,153 | INFO     | will attempt to kill all subprocesses of pid=2144736
[2026-03-05 14:35:09] 2026-03-05 13:34:12,722 | INFO     | process IDs to be killed: [2144736] (in reverse order)
[2026-03-05 14:35:09] 2026-03-05 13:34:12,930 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 14:35:09] 2026-03-05 13:34:12,930 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 14:35:09] 2026-03-05 13:34:12,961 | INFO     | did not find any defunct processes belonging to 2144736
[2026-03-05 14:35:09] 2026-03-05 13:34:12,991 | INFO     | did not find any defunct processes belonging to 2144736
[2026-03-05 14:35:09] 2026-03-05 13:34:12,991 | INFO     | ready for new job
[2026-03-05 14:35:09] 2026-03-05 13:34:12,991 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 14:35:09] 2026-03-05 13:34:12,993 | INFO     | **************************************
[2026-03-05 14:35:09] 2026-03-05 13:34:12,993 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 14:35:09] 2026-03-05 13:34:12,993 | INFO     | **************************************
[2026-03-05 14:35:09] 2026-03-05 13:34:12,993 | INFO     | 
[2026-03-05 14:35:09] 2026-03-05 13:34:13,000 | INFO     | architecture information:
[2026-03-05 14:35:09] 2026-03-05 13:34:13,000 | INFO     | executing command: cat /etc/os-release
[2026-03-05 14:35:09] 2026-03-05 13:34:13,015 | INFO     | cat /etc/os-release:
[2026-03-05 14:35:09] NAME="CentOS Linux"
[2026-03-05 14:35:09] VERSION="7 (Core)"
[2026-03-05 14:35:09] ID="centos"
[2026-03-05 14:35:09] ID_LIKE="rhel fedora"
[2026-03-05 14:35:09] VERSION_ID="7"
[2026-03-05 14:35:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 14:35:09] ANSI_COLOR="0;31"
[2026-03-05 14:35:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 14:35:09] HOME_URL="https://www.centos.org/"
[2026-03-05 14:35:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 14:35:09] 
[2026-03-05 14:35:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 14:35:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 14:35:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 14:35:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 14:35:09] 
[2026-03-05 14:35:09] 2026-03-05 13:34:13,015 | INFO     | **************************************
[2026-03-05 14:35:09] 2026-03-05 13:34:13,518 | INFO     | executing command: df -mP /var/lib/boinc/var/slot80/slots/2
[2026-03-05 14:35:09] 2026-03-05 13:34:13,535 | INFO     | sufficient remaining disk space (20640169984 B)
[2026-03-05 14:35:09] 2026-03-05 13:34:13,535 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 14:35:09] 2026-03-05 13:34:13,535 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 14:35:09] 2026-03-05 13:34:13,535 | INFO     | update_server=False
[2026-03-05 14:35:09] 2026-03-05 13:34:13,535 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 14:35:09] 2026-03-05 13:34:13,535 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 14:35:09] 2026-03-05 13:34:14,050 | INFO     | all payload control threads have been joined
[2026-03-05 14:35:09] 2026-03-05 13:34:14,374 | INFO     | all data control threads have been joined
[2026-03-05 14:35:09] 2026-03-05 13:34:14,514 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 14:35:09] 2026-03-05 13:34:14,515 | INFO     | aborting loop
[2026-03-05 14:35:09] 2026-03-05 13:34:14,540 | INFO     | [job] retrieve thread has finished
[2026-03-05 14:35:09] 2026-03-05 13:34:14,767 | INFO     | [payload] failed_post thread has finished
[2026-03-05 14:35:09] 2026-03-05 13:34:14,776 | INFO     | all job control threads have been joined
[2026-03-05 14:35:09] 2026-03-05 13:34:15,045 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 14:35:09] 2026-03-05 13:34:15,055 | INFO     | [payload] control thread has finished
[2026-03-05 14:35:09] 2026-03-05 13:34:15,115 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 14:35:09] 2026-03-05 13:34:15,199 | INFO     | [data] copytool_in thread has finished
[2026-03-05 14:35:09] 2026-03-05 13:34:15,241 | INFO     | [job] validate thread has finished
[2026-03-05 14:35:09] 2026-03-05 13:34:15,379 | INFO     | [data] control thread has finished
[2026-03-05 14:35:09] 2026-03-05 13:34:15,403 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 14:35:09] 2026-03-05 13:34:15,519 | INFO     | [job] job monitor thread has finished
[2026-03-05 14:35:09] 2026-03-05 13:34:15,541 | INFO     | [data] copytool_out thread has finished
[2026-03-05 14:35:09] 2026-03-05 13:34:15,753 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 14:35:09] 2026-03-05 13:34:15,766 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 14:35:09] 2026-03-05 13:34:15,781 | INFO     | [job] control thread has finished
[2026-03-05 14:35:09] 2026-03-05 13:34:15,813 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 14:35:09] 2026-03-05 13:34:16,076 | INFO     | [payload] validate_post thread has finished
[2026-03-05 14:35:09] 2026-03-05 13:34:16,758 | INFO     | [job] queue monitor thread has finished
[2026-03-05 14:35:09] 2026-03-05 13:34:19,772 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 14:35:09] 2026-03-05 13:34:44,218 | INFO     | PID=2131448 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-05 14:35:09] 2026-03-05 13:34:44,218 | INFO     | .. there are 43 such processes running
[2026-03-05 14:35:09] 2026-03-05 13:34:44,218 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 14:35:09] 2026-03-05 13:34:44,218 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 14:35:09] 2026-03-05 13:34:44,219 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 14:35:09] 2026-03-05 13:35:02,922 | INFO     | [monitor] cgroup control has ended
[2026-03-05 14:35:09] 2026-03-05 13:35:03,709 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22656180377408)>', '<ExcThread(monitor, started 22655872767744)>']
[2026-03-05 14:35:09] 2026-03-05 13:35:04,307 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 14:35:09] 2026-03-05 13:35:04,307 | INFO     | [monitor] control thread has ended
[2026-03-05 14:35:09] 2026-03-05 13:35:08,734 | INFO     | all workflow threads have been joined
[2026-03-05 14:35:09] 2026-03-05 13:35:08,734 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 14:35:09] 2026-03-05 13:35:08,734 | INFO     | traces error code: 0
[2026-03-05 14:35:09] 2026-03-05 13:35:08,734 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 14:35:09] 2026-03-05 13:35:08,855 [wrapper] ==== pilot stdout END ====
[2026-03-05 14:35:09] 2026-03-05 13:35:08,857 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 14:35:09] 2026-03-05 13:35:08,860 [wrapper] pilotpid: 2131448
[2026-03-05 14:35:09] 2026-03-05 13:35:08,863 [wrapper] Pilot exit status: 0
[2026-03-05 14:35:09] 2026-03-05 13:35:08,871 [wrapper] pandaids: 7038545744
[2026-03-05 14:35:09] 2026-03-05 13:35:09,012 [wrapper] cleanup supervisor_pilot 2866661 2131449
[2026-03-05 14:35:09] 2026-03-05 13:35:09,016 [wrapper] Test setup, not cleaning
[2026-03-05 14:35:09] 2026-03-05 13:35:09,018 [wrapper] apfmon messages muted
[2026-03-05 14:35:09] 2026-03-05 13:35:09,020 [wrapper] ==== wrapper stdout END ====
[2026-03-05 14:35:09] 2026-03-05 13:35:09,022 [wrapper] ==== wrapper stderr END ====
[2026-03-05 14:35:09]  *** Error codes and diagnostics ***
[2026-03-05 14:35:09]     "exeErrorCode": 0,
[2026-03-05 14:35:09]     "exeErrorDiag": "",
[2026-03-05 14:35:09]     "pilotErrorCode": 0,
[2026-03-05 14:35:09]     "pilotErrorDiag": "",
[2026-03-05 14:35:09]  *** Listing of results directory ***
[2026-03-05 14:35:09] total 614692
[2026-03-05 14:35:09] -rw-r--r--. 1 boinc boinc    584627 Mar  5 01:15 pilot3.tar.gz
[2026-03-05 14:35:09] -rw-r--r--. 1 boinc boinc      5111 Mar  5 01:15 queuedata.json
[2026-03-05 14:35:09] -rwx------. 1 boinc boinc     36322 Mar  5 01:16 runpilot2-wrapper.sh
[2026-03-05 14:35:09] -rw-r--r--. 1 boinc boinc       100 Mar  5 13:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 14:35:09] -rwxr-xr-x. 1 boinc boinc      7986 Mar  5 13:16 run_atlas
[2026-03-05 14:35:09] -rw-r--r--. 1 boinc boinc       105 Mar  5 13:16 job.xml
[2026-03-05 14:35:09] -rw-r--r--. 1 boinc boinc      6705 Mar  5 13:16 init_data.xml
[2026-03-05 14:35:09] -rw-r--r--. 2 boinc boinc 436988712 Mar  5 13:16 EVNT.46701403._001068.pool.root.1
[2026-03-05 14:35:09] -rw-r--r--. 2 boinc boinc     15845 Mar  5 13:16 start_atlas.sh
[2026-03-05 14:35:09] drwxrwx--x. 2 boinc boinc      4096 Mar  5 13:16 shared
[2026-03-05 14:35:09] -rw-r--r--. 2 boinc boinc    597944 Mar  5 13:16 input.tar.gz
[2026-03-05 14:35:09] -rw-r--r--. 1 boinc boinc         0 Mar  5 13:16 boinc_lockfile
[2026-03-05 14:35:09] -rw-r--r--. 1 boinc boinc      2560 Mar  5 13:16 pandaJob.out
[2026-03-05 14:35:09] -rw-------. 1 boinc boinc    998489 Mar  5 13:16 agis_schedconf.cvmfs.json
[2026-03-05 14:35:09] -rw-------. 1 boinc boinc   1521291 Mar  5 13:16 agis_ddmendpoints.agis.ALL.json
[2026-03-05 14:35:09] -rw-------. 1 boinc boinc       443 Mar  5 13:16 workernode_map.json
[2026-03-05 14:35:09] drwx------. 5 boinc boinc      4096 Mar  5 13:16 pilot3
[2026-03-05 14:35:09] -rw-------. 1 boinc boinc 186629413 Mar  5 14:33 HITS.48955010._003362.pool.root.1
[2026-03-05 14:35:09] -rw-r--r--. 1 boinc boinc       531 Mar  5 14:33 boinc_task_state.xml
[2026-03-05 14:35:09] -rw-------. 1 boinc boinc      1033 Mar  5 14:34 memory_monitor_summary.json
[2026-03-05 14:35:09] -rw-------. 1 boinc boinc    264915 Mar  5 14:34 log.48955010._003362.job.log.tgz.1
[2026-03-05 14:35:09] -rw-------. 1 boinc boinc      6354 Mar  5 14:34 heartbeat.json
[2026-03-05 14:35:09] -rw-------. 1 boinc boinc        95 Mar  5 14:34 pilot_heartbeat.json
[2026-03-05 14:35:09] -rw-r--r--. 1 boinc boinc      8192 Mar  5 14:35 boinc_mmap_file
[2026-03-05 14:35:09] -rw-r--r--. 1 boinc boinc        27 Mar  5 14:35 wrapper_checkpoint.txt
[2026-03-05 14:35:09] -rw-------. 1 boinc boinc      4829 Mar  5 14:35 pilotlog.txt
[2026-03-05 14:35:09] -rw-------. 1 boinc boinc    681754 Mar  5 14:35 log.48955010._003362.job.log.1
[2026-03-05 14:35:09] -rw-------. 1 boinc boinc       357 Mar  5 14:35 output.list
[2026-03-05 14:35:09] -rw-r--r--. 1 boinc boinc       620 Mar  5 14:35 runtime_log
[2026-03-05 14:35:09] -rw-------. 1 boinc boinc    962560 Mar  5 14:35 result.tar.gz
[2026-03-05 14:35:09] -rw-r--r--. 1 boinc boinc      9204 Mar  5 14:35 runtime_log.err
[2026-03-05 14:35:09] -rw-------. 1 boinc boinc       662 Mar  5 14:35 cZ8MDmwYBI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmIKKLDmgqHJXo.diag
[2026-03-05 14:35:09] -rw-r--r--. 1 boinc boinc     21659 Mar  5 14:35 stderr.txt
[2026-03-05 14:35:09] HITS file was successfully produced:
[2026-03-05 14:35:09] -rw-------. 1 boinc boinc 186629413 Mar  5 14:33 shared/HITS.pool.root.1
[2026-03-05 14:35:09]  *** Contents of shared directory: ***
[2026-03-05 14:35:09] total 610552
[2026-03-05 14:35:09] -rw-r--r--. 2 boinc boinc 436988712 Mar  5 13:16 ATLAS.root_0
[2026-03-05 14:35:09] -rw-r--r--. 2 boinc boinc     15845 Mar  5 13:16 start_atlas.sh
[2026-03-05 14:35:09] -rw-r--r--. 2 boinc boinc    597944 Mar  5 13:16 input.tar.gz
[2026-03-05 14:35:09] -rw-------. 1 boinc boinc 186629413 Mar  5 14:33 HITS.pool.root.1
[2026-03-05 14:35:09] -rw-------. 1 boinc boinc    962560 Mar  5 14:35 result.tar.gz
14:35:10 (2123175): run_atlas exited; CPU time 17854.195199
14:35:10 (2123175): called boinc_finish(0)

</stderr_txt>
]]>

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