Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:15:09 (9897): wrapper (7.7.26015): starting
09:15:09 (9897): wrapper: running run_atlas (--nthreads 4)
[2026-03-05 09:15:09] Arguments: --nthreads 4
[2026-03-05 09:15:09] Threads: 4
[2026-03-05 09:15:09] Checking for CVMFS
[2026-03-05 09:15:09] No cvmfs_config command found, will try listing directly
[2026-03-05 09:15:09] CVMFS is ok
[2026-03-05 09:15:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-05 09:15:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-05 09:15:09] Further information can be found at the LHC@home message board.
[2026-03-05 09:15:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 09:15:09] Checking for apptainer binary...
[2026-03-05 09:15:09] which: no apptainer in ((null))
[2026-03-05 09:15:09] apptainer is not installed, using version from CVMFS
[2026-03-05 09:15:09] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 09:15:09] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot80/slots/2/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz
[2026-03-05 09:15:09] apptainer works
[2026-03-05 09:15:09] Set ATHENA_PROC_NUMBER=4
[2026-03-05 09:15:09] Set ATHENA_CORE_NUMBER=4
[2026-03-05 09:15:09] Starting ATLAS job with PandaID=7040669215
[2026-03-05 09:15:09] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot80/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 10:52:44]  *** The last 200 lines of the pilot log: ***
[2026-03-05 10:52:45]  mtime=0
[2026-03-05 10:52:45]  protocol_id=None
[2026-03-05 10:52:45]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-05 10:52:45]  replicas=None
[2026-03-05 10:52:45]  scope=mc23_13p6TeV
[2026-03-05 10:52:45]  status=None
[2026-03-05 10:52:45]  status_code=0
[2026-03-05 10:52:45]  storage_token=
[2026-03-05 10:52:45]  surl=/var/lib/boinc/var/slot80/slots/2/PanDA_Pilot-7040669215/log.48958627._002182.job.log.tgz.1
[2026-03-05 10:52:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/29/e6/log.48958627._002182.job.log.tgz.1
[2026-03-05 10:52:45]  workdir=None
[2026-03-05 10:52:45] ]
[2026-03-05 10:52:45] 2026-03-05 09:52:07,816 | INFO     | transferring file log.48958627._002182.job.log.tgz.1 from /var/lib/boinc/var/slot80/slots/2/PanDA_Pilot-7040669215/log.48958627._002182.job.log.tgz.1 to /var/lib/b
[2026-03-05 10:52:45] 2026-03-05 09:52:07,816 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot80/slots/2/PanDA_Pilot-7040669215/log.48958627._002182.job.log.tgz.1 /var/lib/boinc/var/slot80/slots/2/lo
[2026-03-05 10:52:45] 2026-03-05 09:52:07,830 | INFO     | adding to output.list: log.48958627._002182.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/29/e6/log.48958627._002182.job.log.tg
[2026-03-05 10:52:45] 2026-03-05 09:52:07,831 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-05 10:52:45] 2026-03-05 09:52:07,831 | INFO     | summary of transferred files:
[2026-03-05 10:52:45] 2026-03-05 09:52:07,831 | INFO     |  -- lfn=log.48958627._002182.job.log.tgz.1, status_code=0, status=transferred
[2026-03-05 10:52:45] 2026-03-05 09:52:07,831 | INFO     | stage-out finished correctly
[2026-03-05 10:52:45] 2026-03-05 09:52:08,365 | INFO     | time since job start (5807s) is within the limit (349056.0s)
[2026-03-05 10:52:45] 2026-03-05 09:52:09,981 | INFO     | PID=14516 has CPU usage=9.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-05 10:52:45] 2026-03-05 09:52:09,981 | INFO     | .. there are 45 such processes running
[2026-03-05 10:52:45] 2026-03-05 09:52:10,981 | INFO     | time since job start (5809s) is within the limit (349056.0s)
[2026-03-05 10:52:45] 2026-03-05 09:52:11,304 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-05 10:52:45] 2026-03-05 09:52:11,352 | INFO     | job 7040669215 has state=finished
[2026-03-05 10:52:45] 2026-03-05 09:52:11,352 | INFO     | preparing for final server update for job 7040669215 in state='finished'
[2026-03-05 10:52:45] 2026-03-05 09:52:11,352 | INFO     | reading metadata from: /var/lib/boinc/var/slot80/slots/2/PanDA_Pilot-7040669215/jobReport.json
[2026-03-05 10:52:45] 2026-03-05 09:52:11,354 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot80/slots/2/workernode_map.json
[2026-03-05 10:52:45] 2026-03-05 09:52:11,354 | INFO     | this job has now completed (state=finished)
[2026-03-05 10:52:45] 2026-03-05 09:52:11,354 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-05 10:52:45] 2026-03-05 09:52:11,355 | INFO     | log transfer has been attempted: DONE
[2026-03-05 10:52:45] 2026-03-05 09:52:11,355 | INFO     | job 7040669215 has finished - writing final server update
[2026-03-05 10:52:45] 2026-03-05 09:52:11,355 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3073607/.job.ad'
[2026-03-05 10:52:45] 2026-03-05 09:52:11,355 | INFO     | total number of processed events: 400 (read)
[2026-03-05 10:52:45] 2026-03-05 09:52:11,372 | INFO     | using path: /var/lib/boinc/var/slot80/slots/2/PanDA_Pilot-7040669215/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 10:52:45] 2026-03-05 09:52:11,373 | INFO     | extracted standard info from prmon json
[2026-03-05 10:52:45] 2026-03-05 09:52:11,373 | INFO     | extracted standard memory fields from prmon json
[2026-03-05 10:52:45] 2026-03-05 09:52:11,373 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-05 10:52:45] 2026-03-05 09:52:11,373 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-05 10:52:45] 2026-03-05 09:52:11,373 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-05 10:52:45] 2026-03-05 09:52:11,375 | INFO     | fitting pss+swap vs Time
[2026-03-05 10:52:45] 2026-03-05 09:52:11,375 | INFO     | sum of square deviations: 211285822.0
[2026-03-05 10:52:45] 2026-03-05 09:52:11,375 | INFO     | sum of deviations: 676357904.4999998
[2026-03-05 10:52:45] 2026-03-05 09:52:11,375 | INFO     | mean x: 1772701500.5
[2026-03-05 10:52:45] 2026-03-05 09:52:11,375 | INFO     | mean y: 2347983.0113636362
[2026-03-05 10:52:45] 2026-03-05 09:52:11,375 | INFO     | intersect: -5672337903.778453
[2026-03-05 10:52:45] 2026-03-05 09:52:11,375 | INFO     | chi2: 0.0005179431403999229
[2026-03-05 10:52:45] 2026-03-05 09:52:11,375 | INFO     | current memory leak: 3.20 B/s (using 88 data points, chi2=0.00)
[2026-03-05 10:52:45] 2026-03-05 09:52:11,375 | INFO     | could have reported an average CPU frequency of 3598 MHz (7 samples)
[2026-03-05 10:52:45] 2026-03-05 09:52:11,376 | INFO     | ..............................
[2026-03-05 10:52:45] 2026-03-05 09:52:11,376 | INFO     | . Timing measurements:
[2026-03-05 10:52:45] 2026-03-05 09:52:11,376 | INFO     | . get job = 0 s
[2026-03-05 10:52:45] 2026-03-05 09:52:11,376 | INFO     | . initial setup = 4 s
[2026-03-05 10:52:45] 2026-03-05 09:52:11,376 | INFO     | . payload setup = 5 s
[2026-03-05 10:52:45] 2026-03-05 09:52:11,376 | INFO     | . stage-in = 0 s
[2026-03-05 10:52:45] 2026-03-05 09:52:11,376 | INFO     | . payload execution = 5786 s
[2026-03-05 10:52:45] 2026-03-05 09:52:11,376 | INFO     | . stage-out = 0 s
[2026-03-05 10:52:45] 2026-03-05 09:52:11,376 | INFO     | . log creation = 0 s
[2026-03-05 10:52:45] 2026-03-05 09:52:11,376 | INFO     | ..............................
[2026-03-05 10:52:45] 2026-03-05 09:52:11,422 | INFO     | 
[2026-03-05 10:52:45] 2026-03-05 09:52:11,422 | INFO     | job summary report
[2026-03-05 10:52:45] 2026-03-05 09:52:11,422 | INFO     | --------------------------------------------------
[2026-03-05 10:52:45] 2026-03-05 09:52:11,422 | INFO     | PanDA job id: 7040669215
[2026-03-05 10:52:45] 2026-03-05 09:52:11,422 | INFO     | task id: 48958627
[2026-03-05 10:52:45] 2026-03-05 09:52:11,422 | INFO     | errors: (none)
[2026-03-05 10:52:45] 2026-03-05 09:52:11,422 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-05 10:52:45] 2026-03-05 09:52:11,422 | INFO     | pilot state: finished 
[2026-03-05 10:52:45] 2026-03-05 09:52:11,422 | INFO     | transexitcode: 0
[2026-03-05 10:52:45] 2026-03-05 09:52:11,422 | INFO     | exeerrorcode: 0
[2026-03-05 10:52:45] 2026-03-05 09:52:11,422 | INFO     | exeerrordiag: 
[2026-03-05 10:52:45] 2026-03-05 09:52:11,422 | INFO     | exitcode: 0
[2026-03-05 10:52:45] 2026-03-05 09:52:11,422 | INFO     | exitmsg: OK
[2026-03-05 10:52:45] 2026-03-05 09:52:11,422 | INFO     | cpuconsumptiontime: 22282 s
[2026-03-05 10:52:45] 2026-03-05 09:52:11,422 | INFO     | nevents: 400
[2026-03-05 10:52:45] 2026-03-05 09:52:11,422 | INFO     | neventsw: 0
[2026-03-05 10:52:45] 2026-03-05 09:52:11,423 | INFO     | pid: 35585
[2026-03-05 10:52:45] 2026-03-05 09:52:11,423 | INFO     | pgrp: 35585
[2026-03-05 10:52:45] 2026-03-05 09:52:11,423 | INFO     | corecount: 4
[2026-03-05 10:52:45] 2026-03-05 09:52:11,423 | INFO     | event service: False
[2026-03-05 10:52:45] 2026-03-05 09:52:11,423 | INFO     | sizes: {0: 2295327, 1: 2295788, 11: 2295788, 5795: 2322505, 5796: 2331525, 5799: 2331903}
[2026-03-05 10:52:45] 2026-03-05 09:52:11,423 | INFO     | --------------------------------------------------
[2026-03-05 10:52:45] 2026-03-05 09:52:11,423 | INFO     | 
[2026-03-05 10:52:45] 2026-03-05 09:52:11,423 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot80/slots/2
[2026-03-05 10:52:45] 2026-03-05 09:52:11,440 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-05 10:52:45] 2026-03-05 09:52:11,441 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-05 10:52:45] 2026-03-05 09:52:11,441 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-05 10:52:45] 2026-03-05 09:52:11,441 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-05 10:52:45] 2026-03-05 09:52:11,441 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-05 10:52:45] 2026-03-05 09:52:11,441 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-05 10:52:45] 2026-03-05 09:52:11,441 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-05 10:52:45] 2026-03-05 09:52:11,441 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-05 10:52:45] 2026-03-05 09:52:11,441 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-05 10:52:45] 2026-03-05 09:52:11,441 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-05 10:52:45] 2026-03-05 09:52:11,441 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-05 10:52:45] 2026-03-05 09:52:11,441 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-05 10:52:45] 2026-03-05 09:52:11,441 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-05 10:52:45] 2026-03-05 09:52:11,441 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-05 10:52:45] 2026-03-05 09:52:11,441 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-05 10:52:45] 2026-03-05 09:52:11,441 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-05 10:52:45] 2026-03-05 09:52:11,441 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-05 10:52:45] 2026-03-05 09:52:11,441 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-05 10:52:45] 2026-03-05 09:52:11,441 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-05 10:52:45] 2026-03-05 09:52:11,441 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-05 10:52:45] 2026-03-05 09:52:11,441 | INFO     | job 7040669215 has completed (purged errors)
[2026-03-05 10:52:45] 2026-03-05 09:52:11,441 | INFO     | overall cleanup function is called
[2026-03-05 10:52:45] 2026-03-05 09:52:12,448 | INFO     | --- collectZombieJob: --- 10, [35585]
[2026-03-05 10:52:45] 2026-03-05 09:52:12,449 | INFO     | zombie collector waiting for pid 35585
[2026-03-05 10:52:45] 2026-03-05 09:52:12,449 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 10:52:45] 2026-03-05 09:52:12,449 | INFO     | collected zombie processes
[2026-03-05 10:52:45] 2026-03-05 09:52:12,449 | INFO     | will attempt to kill all subprocesses of pid=35585
[2026-03-05 10:52:45] 2026-03-05 09:52:12,947 | INFO     | process IDs to be killed: [35585] (in reverse order)
[2026-03-05 10:52:45] 2026-03-05 09:52:13,176 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 10:52:45] 2026-03-05 09:52:13,176 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 10:52:45] 2026-03-05 09:52:13,240 | INFO     | did not find any defunct processes belonging to 35585
[2026-03-05 10:52:45] 2026-03-05 09:52:13,316 | INFO     | did not find any defunct processes belonging to 35585
[2026-03-05 10:52:45] 2026-03-05 09:52:13,317 | INFO     | ready for new job
[2026-03-05 10:52:45] 2026-03-05 09:52:13,317 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 10:52:45] 2026-03-05 09:52:13,319 | INFO     | **************************************
[2026-03-05 10:52:45] 2026-03-05 09:52:13,319 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 10:52:45] 2026-03-05 09:52:13,319 | INFO     | **************************************
[2026-03-05 10:52:45] 2026-03-05 09:52:13,319 | INFO     | 
[2026-03-05 10:52:45] 2026-03-05 09:52:13,328 | INFO     | architecture information:
[2026-03-05 10:52:45] 2026-03-05 09:52:13,328 | INFO     | executing command: cat /etc/os-release
[2026-03-05 10:52:45] 2026-03-05 09:52:13,349 | INFO     | cat /etc/os-release:
[2026-03-05 10:52:45] NAME="CentOS Linux"
[2026-03-05 10:52:45] VERSION="7 (Core)"
[2026-03-05 10:52:45] ID="centos"
[2026-03-05 10:52:45] ID_LIKE="rhel fedora"
[2026-03-05 10:52:45] VERSION_ID="7"
[2026-03-05 10:52:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 10:52:45] ANSI_COLOR="0;31"
[2026-03-05 10:52:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 10:52:45] HOME_URL="https://www.centos.org/"
[2026-03-05 10:52:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 10:52:45] 
[2026-03-05 10:52:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 10:52:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 10:52:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 10:52:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 10:52:45] 
[2026-03-05 10:52:45] 2026-03-05 09:52:13,350 | INFO     | **************************************
[2026-03-05 10:52:45] 2026-03-05 09:52:13,664 | WARNING  | process 35585 can no longer be monitored (due to stat problems) - aborting
[2026-03-05 10:52:45] 2026-03-05 09:52:13,853 | INFO     | executing command: df -mP /var/lib/boinc/var/slot80/slots/2
[2026-03-05 10:52:45] 2026-03-05 09:52:13,869 | INFO     | sufficient remaining disk space (20751319040 B)
[2026-03-05 10:52:45] 2026-03-05 09:52:13,869 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 10:52:45] 2026-03-05 09:52:13,869 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 10:52:45] 2026-03-05 09:52:13,870 | INFO     | update_server=False
[2026-03-05 10:52:45] 2026-03-05 09:52:13,870 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 10:52:45] 2026-03-05 09:52:13,870 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 10:52:45] 2026-03-05 09:52:14,003 | INFO     | using path: /var/lib/boinc/var/slot80/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 10:52:45] 2026-03-05 09:52:14,162 | INFO     | all job control threads have been joined
[2026-03-05 10:52:45] 2026-03-05 09:52:14,445 | INFO     | all payload control threads have been joined
[2026-03-05 10:52:45] 2026-03-05 09:52:14,452 | INFO     | all data control threads have been joined
[2026-03-05 10:52:45] 2026-03-05 09:52:14,462 | INFO     | number of running child processes to parent process 35585: 1
[2026-03-05 10:52:45] 2026-03-05 09:52:14,462 | INFO     | maximum number of monitored processes: 6
[2026-03-05 10:52:45] 2026-03-05 09:52:14,462 | INFO     | aborting job monitoring since job object (job id=7040669215) has expired
[2026-03-05 10:52:45] 2026-03-05 09:52:14,462 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 10:52:45] 2026-03-05 09:52:14,463 | INFO     | will abort loop
[2026-03-05 10:52:45] 2026-03-05 09:52:14,877 | INFO     | [job] retrieve thread has finished
[2026-03-05 10:52:45] 2026-03-05 09:52:14,929 | INFO     | [payload] failed_post thread has finished
[2026-03-05 10:52:45] 2026-03-05 09:52:14,930 | INFO     | [job] validate thread has finished
[2026-03-05 10:52:45] 2026-03-05 09:52:15,136 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 10:52:45] 2026-03-05 09:52:15,167 | INFO     | [job] control thread has finished
[2026-03-05 10:52:45] 2026-03-05 09:52:15,200 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 10:52:45] 2026-03-05 09:52:15,298 | INFO     | [data] copytool_in thread has finished
[2026-03-05 10:52:45] 2026-03-05 09:52:15,447 | INFO     | [payload] control thread has finished
[2026-03-05 10:52:45] 2026-03-05 09:52:15,458 | INFO     | [data] control thread has finished
[2026-03-05 10:52:45] 2026-03-05 09:52:15,468 | INFO     | [job] job monitor thread has finished
[2026-03-05 10:52:45] 2026-03-05 09:52:15,754 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 10:52:45] 2026-03-05 09:52:15,877 | INFO     | [data] copytool_out thread has finished
[2026-03-05 10:52:45] 2026-03-05 09:52:16,322 | INFO     | [payload] validate_post thread has finished
[2026-03-05 10:52:45] 2026-03-05 09:52:16,433 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 10:52:45] 2026-03-05 09:52:17,361 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 10:52:45] 2026-03-05 09:52:17,439 | INFO     | [job] queue monitor thread has finished
[2026-03-05 10:52:45] 2026-03-05 09:52:21,364 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 10:52:45] 2026-03-05 09:52:23,973 | INFO     | job.realtimelogging is not enabled
[2026-03-05 10:52:45] 2026-03-05 09:52:24,979 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 10:52:45] 2026-03-05 09:52:30,544 | INFO     | [monitor] cgroup control has ended
[2026-03-05 10:52:45] 2026-03-05 09:52:32,158 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23391058700096)>', '<ExcThread(monitor, started 23390816835328)>']
[2026-03-05 10:52:45] 2026-03-05 09:52:37,183 | INFO     | all workflow threads have been joined
[2026-03-05 10:52:45] 2026-03-05 09:52:37,183 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 10:52:45] 2026-03-05 09:52:37,184 | INFO     | traces error code: 0
[2026-03-05 10:52:45] 2026-03-05 09:52:37,184 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 10:52:45] 2026-03-05 09:52:44,627 | INFO     | PID=14516 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-05 10:52:45] 2026-03-05 09:52:44,627 | INFO     | .. there are 45 such processes running
[2026-03-05 10:52:45] 2026-03-05 09:52:44,628 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 10:52:45] 2026-03-05 09:52:44,628 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 10:52:45] 2026-03-05 09:52:44,628 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 10:52:45] 2026-03-05 09:52:44,628 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 10:52:45] 2026-03-05 09:52:44,628 | INFO     | [monitor] control thread has ended
[2026-03-05 10:52:45] 2026-03-05 09:52:44,795 [wrapper] ==== pilot stdout END ====
[2026-03-05 10:52:45] 2026-03-05 09:52:44,797 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 10:52:45] 2026-03-05 09:52:44,801 [wrapper] pilotpid: 14516
[2026-03-05 10:52:45] 2026-03-05 09:52:44,802 [wrapper] Pilot exit status: 0
[2026-03-05 10:52:45] 2026-03-05 09:52:44,810 [wrapper] pandaids: 7040669215
[2026-03-05 10:52:45] 2026-03-05 09:52:44,942 [wrapper] cleanup supervisor_pilot  857385 14517
[2026-03-05 10:52:45] 2026-03-05 09:52:44,945 [wrapper] Test setup, not cleaning
[2026-03-05 10:52:45] 2026-03-05 09:52:44,947 [wrapper] apfmon messages muted
[2026-03-05 10:52:45] 2026-03-05 09:52:44,948 [wrapper] ==== wrapper stdout END ====
[2026-03-05 10:52:45] 2026-03-05 09:52:44,950 [wrapper] ==== wrapper stderr END ====
[2026-03-05 10:52:45]  *** Error codes and diagnostics ***
[2026-03-05 10:52:45]     "exeErrorCode": 0,
[2026-03-05 10:52:45]     "exeErrorDiag": "",
[2026-03-05 10:52:45]     "pilotErrorCode": 0,
[2026-03-05 10:52:45]     "pilotErrorDiag": "",
[2026-03-05 10:52:45]  *** Listing of results directory ***
[2026-03-05 10:52:45] total 472996
[2026-03-05 10:52:45] -rw-r--r--. 1 boinc boinc      5111 Mar  4 21:50 queuedata.json
[2026-03-05 10:52:45] -rw-r--r--. 1 boinc boinc    584627 Mar  4 21:50 pilot3.tar.gz
[2026-03-05 10:52:45] -rwx------. 1 boinc boinc     36322 Mar  4 21:50 runpilot2-wrapper.sh
[2026-03-05 10:52:45] -rw-r--r--. 1 boinc boinc       100 Mar  5 09:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 10:52:45] -rwxr-xr-x. 1 boinc boinc      7986 Mar  5 09:15 run_atlas
[2026-03-05 10:52:45] -rw-r--r--. 1 boinc boinc       105 Mar  5 09:15 job.xml
[2026-03-05 10:52:45] -rw-r--r--. 2 boinc boinc     15845 Mar  5 09:15 start_atlas.sh
[2026-03-05 10:52:45] drwxrwx--x. 2 boinc boinc      4096 Mar  5 09:15 shared
[2026-03-05 10:52:45] -rw-r--r--. 2 boinc boinc    597935 Mar  5 09:15 input.tar.gz
[2026-03-05 10:52:45] -rw-r--r--. 1 boinc boinc      6705 Mar  5 09:15 init_data.xml
[2026-03-05 10:52:45] -rw-r--r--. 2 boinc boinc 275637489 Mar  5 09:15 EVNT.48958625._000089.pool.root.1
[2026-03-05 10:52:45] -rw-r--r--. 1 boinc boinc         0 Mar  5 09:15 boinc_lockfile
[2026-03-05 10:52:45] -rw-r--r--. 1 boinc boinc      2520 Mar  5 09:15 pandaJob.out
[2026-03-05 10:52:45] -rw-------. 1 boinc boinc    997741 Mar  5 09:15 agis_schedconf.cvmfs.json
[2026-03-05 10:52:45] -rw-------. 1 boinc boinc   1521291 Mar  5 09:15 agis_ddmendpoints.agis.ALL.json
[2026-03-05 10:52:45] -rw-------. 1 boinc boinc       444 Mar  5 09:15 workernode_map.json
[2026-03-05 10:52:45] drwx------. 5 boinc boinc      4096 Mar  5 09:15 pilot3
[2026-03-05 10:52:45] -rw-------. 1 boinc boinc 202548702 Mar  5 10:51 HITS.48958627._002182.pool.root.1
[2026-03-05 10:52:45] -rw-------. 1 boinc boinc      1031 Mar  5 10:52 memory_monitor_summary.json
[2026-03-05 10:52:45] -rw-r--r--. 1 boinc boinc       529 Mar  5 10:52 boinc_task_state.xml
[2026-03-05 10:52:45] -rw-------. 1 boinc boinc    274838 Mar  5 10:52 log.48958627._002182.job.log.tgz.1
[2026-03-05 10:52:45] -rw-------. 1 boinc boinc      6350 Mar  5 10:52 heartbeat.json
[2026-03-05 10:52:45] -rw-r--r--. 1 boinc boinc        27 Mar  5 10:52 wrapper_checkpoint.txt
[2026-03-05 10:52:45] -rw-------. 1 boinc boinc        95 Mar  5 10:52 pilot_heartbeat.json
[2026-03-05 10:52:45] -rw-------. 1 boinc boinc       821 Mar  5 10:52 pilotlog.txt
[2026-03-05 10:52:45] -rw-r--r--. 1 boinc boinc      8192 Mar  5 10:52 boinc_mmap_file
[2026-03-05 10:52:45] -rw-------. 1 boinc boinc    839553 Mar  5 10:52 log.48958627._002182.job.log.1
[2026-03-05 10:52:45] -rw-------. 1 boinc boinc       357 Mar  5 10:52 output.list
[2026-03-05 10:52:45] -rw-r--r--. 1 boinc boinc       620 Mar  5 10:52 runtime_log
[2026-03-05 10:52:45] -rw-------. 1 boinc boinc   1136640 Mar  5 10:52 result.tar.gz
[2026-03-05 10:52:45] -rw-------. 1 boinc boinc       662 Mar  5 10:52 wQLMDmJM8H9n9Rq4apOajLDm4fhM0noT9bVooX4SDmpjJLDmdl1DXn.diag
[2026-03-05 10:52:45] -rw-r--r--. 1 boinc boinc      9204 Mar  5 10:52 runtime_log.err
[2026-03-05 10:52:45] -rw-r--r--. 1 boinc boinc     12306 Mar  5 10:52 stderr.txt
[2026-03-05 10:52:45] HITS file was successfully produced:
[2026-03-05 10:52:45] -rw-------. 1 boinc boinc 202548702 Mar  5 10:51 shared/HITS.pool.root.1
[2026-03-05 10:52:45]  *** Contents of shared directory: ***
[2026-03-05 10:52:45] total 468704
[2026-03-05 10:52:45] -rw-r--r--. 2 boinc boinc     15845 Mar  5 09:15 start_atlas.sh
[2026-03-05 10:52:45] -rw-r--r--. 2 boinc boinc    597935 Mar  5 09:15 input.tar.gz
[2026-03-05 10:52:45] -rw-r--r--. 2 boinc boinc 275637489 Mar  5 09:15 ATLAS.root_0
[2026-03-05 10:52:45] -rw-------. 1 boinc boinc 202548702 Mar  5 10:51 HITS.pool.root.1
[2026-03-05 10:52:45] -rw-------. 1 boinc boinc   1136640 Mar  5 10:52 result.tar.gz
10:52:46 (9897): run_atlas exited; CPU time 22559.463600
10:52:46 (9897): called boinc_finish(0)

</stderr_txt>
]]>

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