Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:51:28 (23870): wrapper (7.7.26015): starting
01:51:28 (23870): wrapper: running run_atlas (--nthreads 12)
[2026-03-05 01:51:28] Arguments: --nthreads 12
[2026-03-05 01:51:28] Threads: 12
[2026-03-05 01:51:28] Checking for CVMFS
[2026-03-05 01:51:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-05 01:51:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-05 01:51:28] Running cvmfs_config stat atlas.cern.ch
[2026-03-05 01:51:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-05 01:51:28] 2.11.2.0 2979 429919 95776 156906 2 50 15116022 20275201 1 130560 1 182744740 99.957 24107671 17491 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-05 01:51:28] CVMFS is ok
[2026-03-05 01:51:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-05 01:51:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-05 01:51:28] Further information can be found at the LHC@home message board.
[2026-03-05 01:51:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 01:51:28] Checking for apptainer binary...
[2026-03-05 01:51:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-05 01:51:28] Running /usr/bin/apptainer --version
[2026-03-05 01:51:29] apptainer version 1.3.2-1.el7
[2026-03-05 01:51:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 01:51:30] c-205-21.aglt2.org
[2026-03-05 01:51:30] apptainer works
[2026-03-05 01:51:30] Set ATHENA_PROC_NUMBER=12
[2026-03-05 01:51:30] Set ATHENA_CORE_NUMBER=12
[2026-03-05 01:51:30] Starting ATLAS job with PandaID=7038553257
[2026-03-05 01:51:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 03:02:02]  *** The last 200 lines of the pilot log: ***
[2026-03-05 03:02:02]  status_code=0
[2026-03-05 03:02:02]  storage_token=
[2026-03-05 03:02:02]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-7038553257/log.48955015._003287.job.log.tgz.1
[2026-03-05 03:02:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7e/23/log.48955015._003287.job.log.tgz.1
[2026-03-05 03:02:02]  workdir=None
[2026-03-05 03:02:02] ]
[2026-03-05 03:02:02] 2026-03-05 08:01:21,126 | INFO     | transferring file log.48955015._003287.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-7038553257/log.48955015._003287.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-03-05 03:02:02] 2026-03-05 08:01:21,127 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-7038553257/log.48955015._003287.job.log.tgz.1 /tmp/boinchome/slots/0/log.48955015._003287.job
[2026-03-05 03:02:02] 2026-03-05 08:01:21,149 | INFO     | adding to output.list: log.48955015._003287.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7e/23/log.48955015._003287.job.log.tg
[2026-03-05 03:02:02] 2026-03-05 08:01:21,150 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-05 03:02:02] 2026-03-05 08:01:21,150 | INFO     | summary of transferred files:
[2026-03-05 03:02:02] 2026-03-05 08:01:21,150 | INFO     |  -- lfn=log.48955015._003287.job.log.tgz.1, status_code=0, status=transferred
[2026-03-05 03:02:02] 2026-03-05 08:01:21,151 | INFO     | stage-out finished correctly
[2026-03-05 03:02:02] 2026-03-05 08:01:21,407 | INFO     | time since job start (4171s) is within the limit (349056.0s)
[2026-03-05 03:02:02] 2026-03-05 08:01:23,413 | INFO     | time since job start (4173s) is within the limit (349056.0s)
[2026-03-05 03:02:02] 2026-03-05 08:01:23,436 | WARNING  | process 31988 can no longer be monitored (due to stat problems) - aborting
[2026-03-05 03:02:02] 2026-03-05 08:01:23,436 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7038553257/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 03:02:02] 2026-03-05 08:01:23,436 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7038553257/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 03:02:02] 2026-03-05 08:01:23,437 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-05 03:02:02] 2026-03-05 08:01:23,437 | WARNING  | maxPSS not found in memory monitor output
[2026-03-05 03:02:02] 2026-03-05 08:01:23,437 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 5163193 B
[2026-03-05 03:02:02] 2026-03-05 08:01:23,438 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15596 B
[2026-03-05 03:02:02] 2026-03-05 08:01:23,438 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-05 03:02:02] 2026-03-05 08:01:23,456 | INFO     | sufficient remaining disk space (28889317376 B)
[2026-03-05 03:02:02] 2026-03-05 08:01:23,456 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-05 03:02:02] 2026-03-05 08:01:23,457 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-7038553257: 5459453 B (within 5033164800 B limit)
[2026-03-05 03:02:02] 2026-03-05 08:01:23,457 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-7038553257/HITS.48955015._003287.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-05 03:02:02] 2026-03-05 08:01:23,457 | INFO     | total size of present files: 0 B (workdir size: 5459453 B)
[2026-03-05 03:02:02] 2026-03-05 08:01:23,458 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-7038553257/HITS.48955015._003287.pool.root.1 since it does not exist
[2026-03-05 03:02:02] 2026-03-05 08:01:23,547 | INFO     | number of running child processes to parent process 31988: 1
[2026-03-05 03:02:02] 2026-03-05 08:01:23,547 | INFO     | maximum number of monitored processes: 6
[2026-03-05 03:02:02] 2026-03-05 08:01:24,013 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-05 03:02:02] 2026-03-05 08:01:24,097 | INFO     | job 7038553257 has state=finished
[2026-03-05 03:02:02] 2026-03-05 08:01:24,097 | INFO     | preparing for final server update for job 7038553257 in state='finished'
[2026-03-05 03:02:02] 2026-03-05 08:01:24,107 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7038553257/jobReport.json
[2026-03-05 03:02:02] 2026-03-05 08:01:24,110 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-03-05 03:02:02] 2026-03-05 08:01:24,110 | INFO     | this job has now completed (state=finished)
[2026-03-05 03:02:02] 2026-03-05 08:01:24,110 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-05 03:02:02] 2026-03-05 08:01:24,110 | INFO     | log transfer has been attempted: DONE
[2026-03-05 03:02:02] 2026-03-05 08:01:24,111 | INFO     | job 7038553257 has finished - writing final server update
[2026-03-05 03:02:02] 2026-03-05 08:01:24,111 | INFO     | total number of processed events: 400 (read)
[2026-03-05 03:02:02] 2026-03-05 08:01:24,113 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7038553257/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 03:02:02] 2026-03-05 08:01:24,113 | INFO     | extracted standard info from prmon json
[2026-03-05 03:02:02] 2026-03-05 08:01:24,113 | INFO     | extracted standard memory fields from prmon json
[2026-03-05 03:02:02] 2026-03-05 08:01:24,113 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-05 03:02:02] 2026-03-05 08:01:24,114 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-05 03:02:02] 2026-03-05 08:01:24,114 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-05 03:02:02] 2026-03-05 08:01:24,115 | INFO     | fitting pss+swap vs Time
[2026-03-05 03:02:02] 2026-03-05 08:01:24,115 | INFO     | sum of square deviations: 70364110.0
[2026-03-05 03:02:02] 2026-03-05 08:01:24,115 | INFO     | sum of deviations: -3702739528.000002
[2026-03-05 03:02:02] 2026-03-05 08:01:24,116 | INFO     | mean x: 1772695669.0
[2026-03-05 03:02:02] 2026-03-05 08:01:24,116 | INFO     | mean y: 2715116.868852459
[2026-03-05 03:02:02] 2026-03-05 08:01:24,116 | INFO     | intersect: 93286497498.55048
[2026-03-05 03:02:02] 2026-03-05 08:01:24,116 | INFO     | chi2: 0.07342859706130518
[2026-03-05 03:02:02] 2026-03-05 08:01:24,116 | INFO     | current memory leak: -52.62 B/s (using 61 data points, chi2=0.07)
[2026-03-05 03:02:02] 2026-03-05 08:01:24,116 | INFO     | could have reported an average CPU frequency of 1695 MHz (6 samples)
[2026-03-05 03:02:02] 2026-03-05 08:01:24,117 | INFO     | ..............................
[2026-03-05 03:02:02] 2026-03-05 08:01:24,117 | INFO     | . Timing measurements:
[2026-03-05 03:02:02] 2026-03-05 08:01:24,117 | INFO     | . get job = 0 s
[2026-03-05 03:02:02] 2026-03-05 08:01:24,117 | INFO     | . initial setup = 7 s
[2026-03-05 03:02:02] 2026-03-05 08:01:24,117 | INFO     | . payload setup = 7 s
[2026-03-05 03:02:02] 2026-03-05 08:01:24,117 | INFO     | . stage-in = 0 s
[2026-03-05 03:02:02] 2026-03-05 08:01:24,117 | INFO     | . payload execution = 4148 s
[2026-03-05 03:02:02] 2026-03-05 08:01:24,117 | INFO     | . stage-out = 0 s
[2026-03-05 03:02:02] 2026-03-05 08:01:24,117 | INFO     | . log creation = 0 s
[2026-03-05 03:02:02] 2026-03-05 08:01:24,117 | INFO     | ..............................
[2026-03-05 03:02:02] 2026-03-05 08:01:24,337 | INFO     | 
[2026-03-05 03:02:02] 2026-03-05 08:01:24,337 | INFO     | job summary report
[2026-03-05 03:02:02] 2026-03-05 08:01:24,337 | INFO     | --------------------------------------------------
[2026-03-05 03:02:02] 2026-03-05 08:01:24,338 | INFO     | PanDA job id: 7038553257
[2026-03-05 03:02:02] 2026-03-05 08:01:24,338 | INFO     | task id: 48955015
[2026-03-05 03:02:02] 2026-03-05 08:01:24,338 | INFO     | errors: (none)
[2026-03-05 03:02:02] 2026-03-05 08:01:24,338 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-05 03:02:02] 2026-03-05 08:01:24,338 | INFO     | pilot state: finished 
[2026-03-05 03:02:02] 2026-03-05 08:01:24,338 | INFO     | transexitcode: 0
[2026-03-05 03:02:02] 2026-03-05 08:01:24,338 | INFO     | exeerrorcode: 0
[2026-03-05 03:02:02] 2026-03-05 08:01:24,338 | INFO     | exeerrordiag: 
[2026-03-05 03:02:02] 2026-03-05 08:01:24,338 | INFO     | exitcode: 0
[2026-03-05 03:02:02] 2026-03-05 08:01:24,339 | INFO     | exitmsg: OK
[2026-03-05 03:02:02] 2026-03-05 08:01:24,339 | INFO     | cpuconsumptiontime: 43671 s
[2026-03-05 03:02:02] 2026-03-05 08:01:24,339 | INFO     | nevents: 400
[2026-03-05 03:02:02] 2026-03-05 08:01:24,339 | INFO     | neventsw: 0
[2026-03-05 03:02:02] 2026-03-05 08:01:24,339 | INFO     | pid: 31988
[2026-03-05 03:02:02] 2026-03-05 08:01:24,339 | INFO     | pgrp: 31988
[2026-03-05 03:02:02] 2026-03-05 08:01:24,339 | INFO     | corecount: 12
[2026-03-05 03:02:02] 2026-03-05 08:01:24,339 | INFO     | event service: False
[2026-03-05 03:02:02] 2026-03-05 08:01:24,339 | INFO     | sizes: {0: 2295809, 11: 2295809, 4158: 2321694, 4159: 2330747, 4162: 2330969}
[2026-03-05 03:02:02] 2026-03-05 08:01:24,339 | INFO     | --------------------------------------------------
[2026-03-05 03:02:02] 2026-03-05 08:01:24,340 | INFO     | 
[2026-03-05 03:02:02] 2026-03-05 08:01:24,340 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-05 03:02:02] 2026-03-05 08:01:24,361 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-05 03:02:02] 2026-03-05 08:01:24,361 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-05 03:02:02] 2026-03-05 08:01:24,361 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-05 03:02:02] 2026-03-05 08:01:24,362 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-05 03:02:02] 2026-03-05 08:01:24,362 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-05 03:02:02] 2026-03-05 08:01:24,362 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-05 03:02:02] 2026-03-05 08:01:24,362 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-05 03:02:02] 2026-03-05 08:01:24,362 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-05 03:02:02] 2026-03-05 08:01:24,362 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-05 03:02:02] 2026-03-05 08:01:24,363 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-05 03:02:02] 2026-03-05 08:01:24,363 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-05 03:02:02] 2026-03-05 08:01:24,363 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-05 03:02:02] 2026-03-05 08:01:24,363 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-05 03:02:02] 2026-03-05 08:01:24,363 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-05 03:02:02] 2026-03-05 08:01:24,364 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-05 03:02:02] 2026-03-05 08:01:24,364 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-05 03:02:02] 2026-03-05 08:01:24,364 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-05 03:02:02] 2026-03-05 08:01:24,364 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-05 03:02:02] 2026-03-05 08:01:24,364 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-05 03:02:02] 2026-03-05 08:01:24,364 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-05 03:02:02] 2026-03-05 08:01:24,365 | INFO     | job 7038553257 has completed (purged errors)
[2026-03-05 03:02:02] 2026-03-05 08:01:24,365 | INFO     | overall cleanup function is called
[2026-03-05 03:02:02] 2026-03-05 08:01:25,372 | INFO     | --- collectZombieJob: --- 10, [31988]
[2026-03-05 03:02:02] 2026-03-05 08:01:25,373 | INFO     | zombie collector waiting for pid 31988
[2026-03-05 03:02:02] 2026-03-05 08:01:25,373 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 03:02:02] 2026-03-05 08:01:25,373 | INFO     | collected zombie processes
[2026-03-05 03:02:02] 2026-03-05 08:01:25,373 | INFO     | will attempt to kill all subprocesses of pid=31988
[2026-03-05 03:02:02] 2026-03-05 08:01:25,465 | INFO     | process IDs to be killed: [31988] (in reverse order)
[2026-03-05 03:02:02] 2026-03-05 08:01:25,515 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 03:02:02] 2026-03-05 08:01:25,516 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 03:02:02] 2026-03-05 08:01:25,520 | INFO     | did not find any defunct processes belonging to 31988
[2026-03-05 03:02:02] 2026-03-05 08:01:25,522 | INFO     | did not find any defunct processes belonging to 31988
[2026-03-05 03:02:02] 2026-03-05 08:01:25,522 | INFO     | ready for new job
[2026-03-05 03:02:02] 2026-03-05 08:01:25,522 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 03:02:02] 2026-03-05 08:01:25,523 | INFO     | **************************************
[2026-03-05 03:02:02] 2026-03-05 08:01:25,523 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 03:02:02] 2026-03-05 08:01:25,524 | INFO     | **************************************
[2026-03-05 03:02:02] 2026-03-05 08:01:25,524 | INFO     | 
[2026-03-05 03:02:02] 2026-03-05 08:01:25,524 | INFO     | architecture information:
[2026-03-05 03:02:02] 2026-03-05 08:01:25,525 | INFO     | executing command: cat /etc/os-release
[2026-03-05 03:02:02] 2026-03-05 08:01:25,540 | INFO     | cat /etc/os-release:
[2026-03-05 03:02:02] NAME="CentOS Linux"
[2026-03-05 03:02:02] VERSION="7 (Core)"
[2026-03-05 03:02:02] ID="centos"
[2026-03-05 03:02:02] ID_LIKE="rhel fedora"
[2026-03-05 03:02:02] VERSION_ID="7"
[2026-03-05 03:02:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 03:02:02] ANSI_COLOR="0;31"
[2026-03-05 03:02:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 03:02:02] HOME_URL="https://www.centos.org/"
[2026-03-05 03:02:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 03:02:02] 
[2026-03-05 03:02:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 03:02:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 03:02:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 03:02:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 03:02:02] 
[2026-03-05 03:02:02] 2026-03-05 08:01:25,540 | INFO     | **************************************
[2026-03-05 03:02:02] 2026-03-05 08:01:26,043 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-05 03:02:02] 2026-03-05 08:01:26,059 | INFO     | sufficient remaining disk space (28895608832 B)
[2026-03-05 03:02:02] 2026-03-05 08:01:26,059 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 03:02:02] 2026-03-05 08:01:26,059 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 03:02:02] 2026-03-05 08:01:26,059 | INFO     | update_server=False
[2026-03-05 03:02:02] 2026-03-05 08:01:26,060 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 03:02:02] 2026-03-05 08:01:26,060 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 03:02:02] 2026-03-05 08:01:26,060 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 03:02:02] 2026-03-05 08:01:26,093 | INFO     | all payload control threads have been joined
[2026-03-05 03:02:02] 2026-03-05 08:01:26,320 | INFO     | all job control threads have been joined
[2026-03-05 03:02:02] 2026-03-05 08:01:26,338 | INFO     | all data control threads have been joined
[2026-03-05 03:02:02] 2026-03-05 08:01:26,742 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 03:02:02] 2026-03-05 08:01:27,055 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 03:02:02] 2026-03-05 08:01:27,056 | INFO     | aborting loop
[2026-03-05 03:02:02] 2026-03-05 08:01:27,065 | INFO     | [job] retrieve thread has finished
[2026-03-05 03:02:02] 2026-03-05 08:01:27,065 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 03:02:02] 2026-03-05 08:01:27,066 | INFO     | [job] queue monitor thread has finished
[2026-03-05 03:02:02] 2026-03-05 08:01:27,099 | INFO     | [payload] control thread has finished
[2026-03-05 03:02:02] 2026-03-05 08:01:27,314 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 03:02:02] 2026-03-05 08:01:27,326 | INFO     | [job] control thread has finished
[2026-03-05 03:02:02] 2026-03-05 08:01:27,343 | INFO     | [data] control thread has finished
[2026-03-05 03:02:02] 2026-03-05 08:01:27,370 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 03:02:02] 2026-03-05 08:01:27,385 | INFO     | [data] copytool_in thread has finished
[2026-03-05 03:02:02] 2026-03-05 08:01:27,441 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 03:02:02] 2026-03-05 08:01:27,794 | INFO     | [payload] validate_post thread has finished
[2026-03-05 03:02:02] 2026-03-05 08:01:28,061 | INFO     | [job] job monitor thread has finished
[2026-03-05 03:02:02] 2026-03-05 08:01:28,099 | INFO     | [job] validate thread has finished
[2026-03-05 03:02:02] 2026-03-05 08:01:28,284 | INFO     | [payload] failed_post thread has finished
[2026-03-05 03:02:02] 2026-03-05 08:01:28,748 | INFO     | [data] copytool_out thread has finished
[2026-03-05 03:02:02] 2026-03-05 08:01:30,065 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 03:02:02] 2026-03-05 08:01:56,237 | INFO     | [monitor] cgroup control has ended
[2026-03-05 03:02:02] 2026-03-05 08:01:56,615 | INFO     | PID=27551 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-05 03:02:02] 2026-03-05 08:01:56,622 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 03:02:02] 2026-03-05 08:01:56,622 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 03:02:02] 2026-03-05 08:01:56,622 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 03:02:02] 2026-03-05 08:01:57,407 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140635824715584)>', '<ExcThread(monitor, started 140635382200064)>']
[2026-03-05 03:02:02] 2026-03-05 08:01:57,627 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 03:02:02] 2026-03-05 08:01:57,627 | INFO     | [monitor] control thread has ended
[2026-03-05 03:02:02] 2026-03-05 08:02:02,432 | INFO     | all workflow threads have been joined
[2026-03-05 03:02:02] 2026-03-05 08:02:02,433 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 03:02:02] 2026-03-05 08:02:02,433 | INFO     | traces error code: 0
[2026-03-05 03:02:02] 2026-03-05 08:02:02,433 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 03:02:02] 2026-03-05 08:02:02,515 [wrapper] ==== pilot stdout END ====
[2026-03-05 03:02:02] 2026-03-05 08:02:02,518 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 03:02:02] 2026-03-05 08:02:02,522 [wrapper] pilotpid: 27551
[2026-03-05 03:02:02] 2026-03-05 08:02:02,526 [wrapper] Pilot exit status: 0
[2026-03-05 03:02:02] 2026-03-05 08:02:02,541 [wrapper] pandaids: 7038553257
[2026-03-05 03:02:02] 2026-03-05 08:02:02,580 [wrapper] cleanup supervisor_pilot 18294 27552
[2026-03-05 03:02:02] 2026-03-05 08:02:02,584 [wrapper] Test setup, not cleaning
[2026-03-05 03:02:02] 2026-03-05 08:02:02,588 [wrapper] apfmon messages muted
[2026-03-05 03:02:02] 2026-03-05 08:02:02,592 [wrapper] ==== wrapper stdout END ====
[2026-03-05 03:02:02] 2026-03-05 08:02:02,596 [wrapper] ==== wrapper stderr END ====
[2026-03-05 03:02:02]  *** Error codes and diagnostics ***
[2026-03-05 03:02:02]     "exeErrorCode": 0,
[2026-03-05 03:02:02]     "exeErrorDiag": "",
[2026-03-05 03:02:02]     "pilotErrorCode": 0,
[2026-03-05 03:02:02]     "pilotErrorDiag": "",
[2026-03-05 03:02:02]  *** Listing of results directory ***
[2026-03-05 03:02:02] total 621892
[2026-03-05 03:02:02] -rw-r--r-- 1 boincer umatlas    584627 Mar  4 21:30 pilot3.tar.gz
[2026-03-05 03:02:02] -rwx------ 1 boincer umatlas     36322 Mar  4 21:30 runpilot2-wrapper.sh
[2026-03-05 03:02:02] -rw-r--r-- 1 boincer umatlas      5111 Mar  4 21:30 queuedata.json
[2026-03-05 03:02:02] -rw-r--r-- 1 boincer umatlas       100 Mar  5 01:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 03:02:02] -rwxr-xr-x 1 boincer umatlas      7986 Mar  5 01:51 run_atlas
[2026-03-05 03:02:02] -rw-r--r-- 1 boincer umatlas       105 Mar  5 01:51 job.xml
[2026-03-05 03:02:02] -rw-r--r-- 2 boincer umatlas 442280142 Mar  5 01:51 EVNT.46701403._002110.pool.root.1
[2026-03-05 03:02:02] -rw-r--r-- 2 boincer umatlas     15845 Mar  5 01:51 start_atlas.sh
[2026-03-05 03:02:02] drwxrwx--x 2 boincer umatlas      4096 Mar  5 01:51 shared
[2026-03-05 03:02:02] -rw-r--r-- 2 boincer umatlas    597956 Mar  5 01:51 input.tar.gz
[2026-03-05 03:02:02] -rw-r--r-- 1 boincer umatlas         0 Mar  5 01:51 boinc_lockfile
[2026-03-05 03:02:02] -rw-r--r-- 1 boincer umatlas      2570 Mar  5 01:51 pandaJob.out
[2026-03-05 03:02:02] -rw------- 1 boincer umatlas        57 Mar  5 01:51 setup.sh.local
[2026-03-05 03:02:02] -rw------- 1 boincer umatlas    997749 Mar  5 01:51 agis_schedconf.cvmfs.json
[2026-03-05 03:02:02] -rw------- 1 boincer umatlas   1521291 Mar  5 01:51 agis_ddmendpoints.agis.ALL.json
[2026-03-05 03:02:02] -rw------- 1 boincer umatlas       445 Mar  5 01:51 workernode_map.json
[2026-03-05 03:02:02] drwx------ 5 boincer umatlas      4096 Mar  5 01:51 pilot3
[2026-03-05 03:02:02] -rw-r--r-- 1 boincer umatlas      5953 Mar  5 02:54 init_data.xml
[2026-03-05 03:02:02] -rw------- 1 boincer umatlas 188562411 Mar  5 03:00 HITS.48955015._003287.pool.root.1
[2026-03-05 03:02:02] -rw-r--r-- 1 boincer umatlas       530 Mar  5 03:01 boinc_task_state.xml
[2026-03-05 03:02:02] -rw------- 1 boincer umatlas      1045 Mar  5 03:01 memory_monitor_summary.json
[2026-03-05 03:02:02] -rw------- 1 boincer umatlas    407018 Mar  5 03:01 log.48955015._003287.job.log.tgz.1
[2026-03-05 03:02:02] -rw------- 1 boincer umatlas      6418 Mar  5 03:01 heartbeat.json
[2026-03-05 03:02:02] -rw-r--r-- 1 boincer umatlas        27 Mar  5 03:01 wrapper_checkpoint.txt
[2026-03-05 03:02:02] -rw-r--r-- 1 boincer umatlas      8192 Mar  5 03:01 boinc_mmap_file
[2026-03-05 03:02:02] -rw------- 1 boincer umatlas        95 Mar  5 03:01 pilot_heartbeat.json
[2026-03-05 03:02:02] -rw------- 1 boincer umatlas      4742 Mar  5 03:02 pilotlog.txt
[2026-03-05 03:02:02] -rw------- 1 boincer umatlas    613193 Mar  5 03:02 log.48955015._003287.job.log.1
[2026-03-05 03:02:02] -rw------- 1 boincer umatlas       357 Mar  5 03:02 output.list
[2026-03-05 03:02:02] -rw-r--r-- 1 boincer umatlas       620 Mar  5 03:02 runtime_log
[2026-03-05 03:02:02] -rw------- 1 boincer umatlas   1034240 Mar  5 03:02 result.tar.gz
[2026-03-05 03:02:02] -rw-r--r-- 1 boincer umatlas      9343 Mar  5 03:02 runtime_log.err
[2026-03-05 03:02:02] -rw------- 1 boincer umatlas       659 Mar  5 03:02 qNJODmseDI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmmXKLDm0yKOBn.diag
[2026-03-05 03:02:02] -rw-r--r-- 1 boincer umatlas     22399 Mar  5 03:02 stderr.txt
[2026-03-05 03:02:02] HITS file was successfully produced:
[2026-03-05 03:02:02] -rw------- 1 boincer umatlas 188562411 Mar  5 03:00 shared/HITS.pool.root.1
[2026-03-05 03:02:02]  *** Contents of shared directory: ***
[2026-03-05 03:02:02] total 617676
[2026-03-05 03:02:02] -rw-r--r-- 2 boincer umatlas 442280142 Mar  5 01:51 ATLAS.root_0
[2026-03-05 03:02:02] -rw-r--r-- 2 boincer umatlas     15845 Mar  5 01:51 start_atlas.sh
[2026-03-05 03:02:02] -rw-r--r-- 2 boincer umatlas    597956 Mar  5 01:51 input.tar.gz
[2026-03-05 03:02:02] -rw------- 1 boincer umatlas 188562411 Mar  5 03:00 HITS.pool.root.1
[2026-03-05 03:02:02] -rw------- 1 boincer umatlas   1034240 Mar  5 03:02 result.tar.gz
03:02:04 (23870): run_atlas exited; CPU time 43648.652802
03:02:04 (23870): called boinc_finish(0)

</stderr_txt>
]]>

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