Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:18:39 (6048): wrapper (7.7.26015): starting
16:18:39 (6048): wrapper: running run_atlas (--nthreads 8)
[2026-03-05 16:18:39] Arguments: --nthreads 8
[2026-03-05 16:18:39] Threads: 8
[2026-03-05 16:18:39] Checking for CVMFS
[2026-03-05 16:18:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-05 16:18:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-05 16:18:43] Running cvmfs_config stat atlas.cern.ch
[2026-03-05 16:18:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-05 16:18:44] 2.11.2.0 22272 114785 138772 156924 3 53 24634683 25165824 4780 130560 158 36701904 99.846 26744884 938 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-05 16:18:44] CVMFS is ok
[2026-03-05 16:18:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 16:18:44] Checking for apptainer binary...
[2026-03-05 16:18:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-05 16:18:44] Running /usr/bin/apptainer --version
[2026-03-05 16:18:45] apptainer version 1.3.2-1.el7
[2026-03-05 16:18:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 16:19:01] cg-vwn457.simple-grid.lan
[2026-03-05 16:19:01] apptainer works
[2026-03-05 16:19:01] Set ATHENA_PROC_NUMBER=8
[2026-03-05 16:19:01] Set ATHENA_CORE_NUMBER=8
[2026-03-05 16:19:01] Starting ATLAS job with PandaID=7038552322
[2026-03-05 16:19:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 20:00:48]  *** The last 200 lines of the pilot log: ***
[2026-03-05 20:00:48] 2026-03-05 18:59:40,560 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-7038552322/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 20:00:48] 2026-03-05 18:59:40,561 | INFO     | extracted standard info from prmon json
[2026-03-05 20:00:48] 2026-03-05 18:59:40,561 | INFO     | extracted standard memory fields from prmon json
[2026-03-05 20:00:48] 2026-03-05 18:59:40,561 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-05 20:00:48] 2026-03-05 18:59:40,561 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-05 20:00:48] 2026-03-05 18:59:40,562 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-05 20:00:48] 2026-03-05 18:59:40,566 | INFO     | fitting pss+swap vs Time
[2026-03-05 20:00:48] 2026-03-05 18:59:40,567 | INFO     | sum of square deviations: 2790348132.0
[2026-03-05 20:00:48] 2026-03-05 18:59:40,568 | INFO     | sum of deviations: 51079012551.499985
[2026-03-05 20:00:48] 2026-03-05 18:59:40,568 | INFO     | mean x: 1772730809.5
[2026-03-05 20:00:48] 2026-03-05 18:59:40,573 | INFO     | mean y: 2443765.956730769
[2026-03-05 20:00:48] 2026-03-05 18:59:40,573 | INFO     | intersect: -32448467369.629566
[2026-03-05 20:00:48] 2026-03-05 18:59:40,573 | INFO     | chi2: 7.092861583833394
[2026-03-05 20:00:48] 2026-03-05 18:59:40,574 | INFO     | sum of square deviations: 2593916542.0
[2026-03-05 20:00:48] 2026-03-05 18:59:40,575 | INFO     | sum of deviations: 63648597735.0
[2026-03-05 20:00:48] 2026-03-05 18:59:40,576 | INFO     | mean x: 1772730657.0
[2026-03-05 20:00:48] 2026-03-05 18:59:40,576 | INFO     | mean y: 2453316.5960591133
[2026-03-05 20:00:48] 2026-03-05 18:59:40,576 | INFO     | intersect: -43496178444.66253
[2026-03-05 20:00:48] 2026-03-05 18:59:40,576 | INFO     | chi2: 6.393936897338676
[2026-03-05 20:00:48] 2026-03-05 18:59:40,576 | INFO     | current chi2=6.393936897338676 (change=9.85391690270344 %)
[2026-03-05 20:00:48] 2026-03-05 18:59:40,576 | INFO     | right removable region: 202
[2026-03-05 20:00:48] 2026-03-05 18:59:40,577 | INFO     | sum of square deviations: 2593916542.0
[2026-03-05 20:00:48] 2026-03-05 18:59:40,579 | INFO     | sum of deviations: -19120780132.0
[2026-03-05 20:00:48] 2026-03-05 18:59:40,579 | INFO     | mean x: 1772730962.0
[2026-03-05 20:00:48] 2026-03-05 18:59:40,579 | INFO     | mean y: 2498215.201970443
[2026-03-05 20:00:48] 2026-03-05 18:59:40,579 | INFO     | intersect: 13069996112.206726
[2026-03-05 20:00:48] 2026-03-05 18:59:40,579 | INFO     | chi2: 2.4045775017147752
[2026-03-05 20:00:48] 2026-03-05 18:59:40,580 | INFO     | current chi2=2.4045775017147752 (change=66.09862643879197 %)
[2026-03-05 20:00:48] 2026-03-05 18:59:40,580 | INFO     | sum of square deviations: 2406926989.5
[2026-03-05 20:00:48] 2026-03-05 18:59:40,581 | INFO     | sum of deviations: -53714501843.99999
[2026-03-05 20:00:48] 2026-03-05 18:59:40,582 | INFO     | mean x: 1772731114.5
[2026-03-05 20:00:48] 2026-03-05 18:59:40,582 | INFO     | mean y: 2526215.3535353537
[2026-03-05 20:00:48] 2026-03-05 18:59:40,582 | INFO     | intersect: 39563912636.34635
[2026-03-05 20:00:48] 2026-03-05 18:59:40,582 | INFO     | chi2: 0.9899206402310515
[2026-03-05 20:00:48] 2026-03-05 18:59:40,582 | INFO     | current chi2=0.9899206402310515 (change=58.83182640089123 %)
[2026-03-05 20:00:48] 2026-03-05 18:59:40,583 | INFO     | sum of square deviations: 2229146912.0
[2026-03-05 20:00:48] 2026-03-05 18:59:40,584 | INFO     | sum of deviations: -52538423917.999985
[2026-03-05 20:00:48] 2026-03-05 18:59:40,584 | INFO     | mean x: 1772731267.0
[2026-03-05 20:00:48] 2026-03-05 18:59:40,584 | INFO     | mean y: 2525161.6269430052
[2026-03-05 20:00:48] 2026-03-05 18:59:40,584 | INFO     | intersect: 41783758285.81648
[2026-03-05 20:00:48] 2026-03-05 18:59:40,585 | INFO     | chi2: 0.9746524632981568
[2026-03-05 20:00:48] 2026-03-05 18:59:40,585 | INFO     | current chi2=0.9746524632981568 (change=1.542363732241311 %)
[2026-03-05 20:00:48] 2026-03-05 18:59:40,585 | INFO     | left removable region: 30
[2026-03-05 20:00:48] 2026-03-05 18:59:40,585 | INFO     | sum of square deviations: 1577789583.0
[2026-03-05 20:00:48] 2026-03-05 18:59:40,587 | INFO     | sum of deviations: -20185516984.500008
[2026-03-05 20:00:48] 2026-03-05 18:59:40,587 | INFO     | mean x: 1772731541.5
[2026-03-05 20:00:48] 2026-03-05 18:59:40,587 | INFO     | mean y: 2519396.180232558
[2026-03-05 20:00:48] 2026-03-05 18:59:40,587 | INFO     | intersect: 22682034475.667946
[2026-03-05 20:00:48] 2026-03-05 18:59:40,587 | INFO     | chi2: 0.14021471374851976
[2026-03-05 20:00:48] 2026-03-05 18:59:40,587 | INFO     | current memory leak: -12.79 B/s (using 172 data points, chi2=0.14)
[2026-03-05 20:00:48] 2026-03-05 18:59:40,588 | INFO     | could have reported an average CPU frequency of 2250 MHz (11 samples)
[2026-03-05 20:00:48] 2026-03-05 18:59:40,588 | INFO     | ..............................
[2026-03-05 20:00:48] 2026-03-05 18:59:40,588 | INFO     | . Timing measurements:
[2026-03-05 20:00:48] 2026-03-05 18:59:40,588 | INFO     | . get job = 0 s
[2026-03-05 20:00:48] 2026-03-05 18:59:40,588 | INFO     | . initial setup = 107 s
[2026-03-05 20:00:48] 2026-03-05 18:59:40,589 | INFO     | . payload setup = 117 s
[2026-03-05 20:00:48] 2026-03-05 18:59:40,589 | INFO     | . stage-in = 0 s
[2026-03-05 20:00:48] 2026-03-05 18:59:40,589 | INFO     | . payload execution = 12781 s
[2026-03-05 20:00:48] 2026-03-05 18:59:40,589 | INFO     | . stage-out = 3 s
[2026-03-05 20:00:48] 2026-03-05 18:59:40,589 | INFO     | . log creation = 1 s
[2026-03-05 20:00:48] 2026-03-05 18:59:40,589 | INFO     | ..............................
[2026-03-05 20:00:48] 2026-03-05 18:59:40,697 | INFO     | 
[2026-03-05 20:00:48] 2026-03-05 18:59:40,697 | INFO     | job summary report
[2026-03-05 20:00:48] 2026-03-05 18:59:40,697 | INFO     | --------------------------------------------------
[2026-03-05 20:00:48] 2026-03-05 18:59:40,697 | INFO     | PanDA job id: 7038552322
[2026-03-05 20:00:48] 2026-03-05 18:59:40,698 | INFO     | task id: 48955015
[2026-03-05 20:00:48] 2026-03-05 18:59:40,698 | INFO     | errors: (none)
[2026-03-05 20:00:48] 2026-03-05 18:59:40,698 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-05 20:00:48] 2026-03-05 18:59:40,698 | INFO     | pilot state: finished 
[2026-03-05 20:00:48] 2026-03-05 18:59:40,698 | INFO     | transexitcode: 0
[2026-03-05 20:00:48] 2026-03-05 18:59:40,698 | INFO     | exeerrorcode: 0
[2026-03-05 20:00:48] 2026-03-05 18:59:40,698 | INFO     | exeerrordiag: 
[2026-03-05 20:00:48] 2026-03-05 18:59:40,698 | INFO     | exitcode: 0
[2026-03-05 20:00:48] 2026-03-05 18:59:40,698 | INFO     | exitmsg: OK
[2026-03-05 20:00:48] 2026-03-05 18:59:40,698 | INFO     | cpuconsumptiontime: 48517 s
[2026-03-05 20:00:48] 2026-03-05 18:59:40,699 | INFO     | nevents: 400
[2026-03-05 20:00:48] 2026-03-05 18:59:40,699 | INFO     | neventsw: 0
[2026-03-05 20:00:48] 2026-03-05 18:59:40,699 | INFO     | pid: 14712
[2026-03-05 20:00:48] 2026-03-05 18:59:40,699 | INFO     | pgrp: 14712
[2026-03-05 20:00:48] 2026-03-05 18:59:40,699 | INFO     | corecount: 8
[2026-03-05 20:00:48] 2026-03-05 18:59:40,699 | INFO     | event service: False
[2026-03-05 20:00:48] 2026-03-05 18:59:40,699 | INFO     | sizes: {0: 2294717, 1: 2295403, 2: 2295864, 12: 2295864, 12903: 2325883, 12908: 2334883, 12912: 2335261}
[2026-03-05 20:00:48] 2026-03-05 18:59:40,699 | INFO     | --------------------------------------------------
[2026-03-05 20:00:48] 2026-03-05 18:59:40,699 | INFO     | 
[2026-03-05 20:00:48] 2026-03-05 18:59:40,699 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2026-03-05 20:00:48] 2026-03-05 18:59:41,026 | INFO     | PID=10152 has CPU usage=8.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-05 20:00:48] 2026-03-05 18:59:41,026 | INFO     | .. there are 9 such processes running
[2026-03-05 20:00:48] 2026-03-05 18:59:41,103 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-05 20:00:48] 2026-03-05 18:59:41,104 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-05 20:00:48] 2026-03-05 18:59:41,104 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-05 20:00:48] 2026-03-05 18:59:41,104 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-05 20:00:48] 2026-03-05 18:59:41,104 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-05 20:00:48] 2026-03-05 18:59:41,104 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-05 20:00:48] 2026-03-05 18:59:41,104 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-05 20:00:48] 2026-03-05 18:59:41,104 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-05 20:00:48] 2026-03-05 18:59:41,104 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-05 20:00:48] 2026-03-05 18:59:41,104 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-05 20:00:48] 2026-03-05 18:59:41,105 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-05 20:00:48] 2026-03-05 18:59:41,105 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-05 20:00:48] 2026-03-05 18:59:41,105 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-05 20:00:48] 2026-03-05 18:59:41,105 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-05 20:00:48] 2026-03-05 18:59:41,105 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-05 20:00:48] 2026-03-05 18:59:41,105 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-05 20:00:48] 2026-03-05 18:59:41,105 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-05 20:00:48] 2026-03-05 18:59:41,105 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-05 20:00:48] 2026-03-05 18:59:41,106 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-05 20:00:48] 2026-03-05 18:59:41,106 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-05 20:00:48] 2026-03-05 18:59:41,106 | INFO     | job 7038552322 has completed (purged errors)
[2026-03-05 20:00:48] 2026-03-05 18:59:41,106 | INFO     | overall cleanup function is called
[2026-03-05 20:00:48] 2026-03-05 18:59:42,115 | INFO     | --- collectZombieJob: --- 10, [14712]
[2026-03-05 20:00:48] 2026-03-05 18:59:42,115 | INFO     | zombie collector waiting for pid 14712
[2026-03-05 20:00:48] 2026-03-05 18:59:42,115 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 20:00:48] 2026-03-05 18:59:42,115 | INFO     | collected zombie processes
[2026-03-05 20:00:48] 2026-03-05 18:59:42,115 | INFO     | will attempt to kill all subprocesses of pid=14712
[2026-03-05 20:00:48] 2026-03-05 18:59:42,243 | INFO     | process IDs to be killed: [14712] (in reverse order)
[2026-03-05 20:00:48] 2026-03-05 18:59:42,960 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 20:00:48] 2026-03-05 18:59:42,961 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 20:00:48] 2026-03-05 18:59:42,964 | INFO     | did not find any defunct processes belonging to 14712
[2026-03-05 20:00:48] 2026-03-05 18:59:42,966 | INFO     | did not find any defunct processes belonging to 14712
[2026-03-05 20:00:48] 2026-03-05 18:59:42,966 | INFO     | ready for new job
[2026-03-05 20:00:48] 2026-03-05 18:59:42,966 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 20:00:48] 2026-03-05 18:59:42,968 | INFO     | **************************************
[2026-03-05 20:00:48] 2026-03-05 18:59:42,968 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 20:00:48] 2026-03-05 18:59:42,969 | INFO     | **************************************
[2026-03-05 20:00:48] 2026-03-05 18:59:42,969 | INFO     | 
[2026-03-05 20:00:48] 2026-03-05 18:59:42,969 | INFO     | pilot is running in a VM
[2026-03-05 20:00:48] 2026-03-05 18:59:42,969 | INFO     | architecture information:
[2026-03-05 20:00:48] 2026-03-05 18:59:42,979 | INFO     | executing command: cat /etc/os-release
[2026-03-05 20:00:48] 2026-03-05 18:59:43,209 | INFO     | cat /etc/os-release:
[2026-03-05 20:00:48] NAME="CentOS Linux"
[2026-03-05 20:00:48] VERSION="7 (Core)"
[2026-03-05 20:00:48] ID="centos"
[2026-03-05 20:00:48] ID_LIKE="rhel fedora"
[2026-03-05 20:00:48] VERSION_ID="7"
[2026-03-05 20:00:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 20:00:48] ANSI_COLOR="0;31"
[2026-03-05 20:00:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 20:00:48] HOME_URL="https://www.centos.org/"
[2026-03-05 20:00:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 20:00:48] 
[2026-03-05 20:00:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 20:00:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 20:00:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 20:00:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 20:00:48] 
[2026-03-05 20:00:48] 2026-03-05 18:59:43,210 | INFO     | **************************************
[2026-03-05 20:00:48] 2026-03-05 18:59:43,713 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2026-03-05 20:00:48] 2026-03-05 18:59:43,964 | INFO     | sufficient remaining disk space (496023633920 B)
[2026-03-05 20:00:48] 2026-03-05 18:59:43,965 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 20:00:48] 2026-03-05 18:59:43,965 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 20:00:48] 2026-03-05 18:59:43,965 | INFO     | update_server=False
[2026-03-05 20:00:48] 2026-03-05 18:59:43,965 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 20:00:48] 2026-03-05 18:59:43,965 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 20:00:48] 2026-03-05 18:59:43,966 | INFO     | aborting loop
[2026-03-05 20:00:48] 2026-03-05 18:59:44,189 | INFO     | all data control threads have been joined
[2026-03-05 20:00:48] 2026-03-05 18:59:44,562 | INFO     | all payload control threads have been joined
[2026-03-05 20:00:48] 2026-03-05 18:59:44,717 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 20:00:48] 2026-03-05 18:59:44,795 | INFO     | all job control threads have been joined
[2026-03-05 20:00:48] 2026-03-05 18:59:44,970 | INFO     | [job] retrieve thread has finished
[2026-03-05 20:00:48] 2026-03-05 18:59:44,973 | INFO     | [job] job monitor thread has finished
[2026-03-05 20:00:48] 2026-03-05 18:59:45,195 | INFO     | [data] control thread has finished
[2026-03-05 20:00:48] 2026-03-05 18:59:45,380 | INFO     | [payload] failed_post thread has finished
[2026-03-05 20:00:48] 2026-03-05 18:59:45,468 | INFO     | [payload] validate_post thread has finished
[2026-03-05 20:00:48] 2026-03-05 18:59:45,482 | INFO     | [data] copytool_in thread has finished
[2026-03-05 20:00:48] 2026-03-05 18:59:45,505 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 20:00:48] 2026-03-05 18:59:45,567 | INFO     | [payload] control thread has finished
[2026-03-05 20:00:48] 2026-03-05 18:59:45,711 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 20:00:48] 2026-03-05 18:59:45,801 | INFO     | [job] control thread has finished
[2026-03-05 20:00:48] 2026-03-05 18:59:45,937 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 20:00:48] 2026-03-05 18:59:46,129 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 20:00:48] 2026-03-05 18:59:46,214 | INFO     | [job] validate thread has finished
[2026-03-05 20:00:48] 2026-03-05 18:59:46,296 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 20:00:48] 2026-03-05 18:59:46,717 | INFO     | [job] queue monitor thread has finished
[2026-03-05 20:00:48] 2026-03-05 18:59:46,724 | INFO     | [data] copytool_out thread has finished
[2026-03-05 20:00:48] 2026-03-05 18:59:50,305 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 20:00:48] 2026-03-05 18:59:54,691 | INFO     | job.realtimelogging is not enabled
[2026-03-05 20:00:48] 2026-03-05 18:59:55,697 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 20:00:48] 2026-03-05 19:00:13,165 | INFO     | PID=10152 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-05 20:00:48] 2026-03-05 19:00:13,165 | INFO     | .. there are 9 such processes running
[2026-03-05 20:00:48] 2026-03-05 19:00:13,165 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 20:00:48] 2026-03-05 19:00:13,165 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 20:00:48] 2026-03-05 19:00:13,165 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 20:00:48] 2026-03-05 19:00:38,104 | INFO     | [monitor] cgroup control has ended
[2026-03-05 20:00:48] 2026-03-05 19:00:39,315 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140497724127040)>', '<ExcThread(monitor, started 140497263765248)>']
[2026-03-05 20:00:48] 2026-03-05 19:00:39,321 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 20:00:48] 2026-03-05 19:00:39,321 | INFO     | [monitor] control thread has ended
[2026-03-05 20:00:48] 2026-03-05 19:00:44,341 | INFO     | all workflow threads have been joined
[2026-03-05 20:00:48] 2026-03-05 19:00:44,341 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 20:00:48] 2026-03-05 19:00:44,341 | INFO     | traces error code: 0
[2026-03-05 20:00:48] 2026-03-05 19:00:44,341 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 20:00:48] 2026-03-05 19:00:44,686 [wrapper] ==== pilot stdout END ====
[2026-03-05 20:00:48] 2026-03-05 19:00:44,769 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 20:00:48] 2026-03-05 19:00:44,885 [wrapper] pilotpid: 10152
[2026-03-05 20:00:48] 2026-03-05 19:00:44,955 [wrapper] Pilot exit status: 0
[2026-03-05 20:00:48] 2026-03-05 19:00:45,368 [wrapper] pandaids: 7038552322
[2026-03-05 20:00:48] 2026-03-05 19:00:46,404 [wrapper] cleanup supervisor_pilot 22437 10153
[2026-03-05 20:00:48] 2026-03-05 19:00:46,489 [wrapper] Test setup, not cleaning
[2026-03-05 20:00:48] 2026-03-05 19:00:46,572 [wrapper] apfmon messages muted
[2026-03-05 20:00:48] 2026-03-05 19:00:46,698 [wrapper] ==== wrapper stdout END ====
[2026-03-05 20:00:48] 2026-03-05 19:00:46,794 [wrapper] ==== wrapper stderr END ====
[2026-03-05 20:00:48]  *** Error codes and diagnostics ***
[2026-03-05 20:00:48]     "exeErrorCode": 0,
[2026-03-05 20:00:48]     "exeErrorDiag": "",
[2026-03-05 20:00:48]     "pilotErrorCode": 0,
[2026-03-05 20:00:48]     "pilotErrorDiag": "",
[2026-03-05 20:00:48]  *** Listing of results directory ***
[2026-03-05 20:00:48] total 612912
[2026-03-05 20:00:48] -rw-r--r--. 1 boinc boinc      5111 Mar  5 03:30 queuedata.json
[2026-03-05 20:00:48] -rw-r--r--. 1 boinc boinc    584627 Mar  5 03:30 pilot3.tar.gz
[2026-03-05 20:00:48] -rwx------. 1 boinc boinc     36322 Mar  5 03:30 runpilot2-wrapper.sh
[2026-03-05 20:00:48] -rw-r--r--. 1 boinc boinc       100 Mar  5 16:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 20:00:48] -rwxr-xr-x. 1 boinc boinc      7986 Mar  5 16:18 run_atlas
[2026-03-05 20:00:48] -rw-r--r--. 1 boinc boinc       105 Mar  5 16:18 job.xml
[2026-03-05 20:00:48] -rw-r--r--. 1 boinc boinc      6391 Mar  5 16:18 init_data.xml
[2026-03-05 20:00:48] -rw-r--r--. 2 boinc boinc 436284215 Mar  5 16:18 EVNT.46701403._002104.pool.root.1
[2026-03-05 20:00:48] -rw-r--r--. 2 boinc boinc     15845 Mar  5 16:18 start_atlas.sh
[2026-03-05 20:00:48] drwxrwx--x. 2 boinc boinc        68 Mar  5 16:18 shared
[2026-03-05 20:00:48] -rw-r--r--. 2 boinc boinc    597958 Mar  5 16:18 input.tar.gz
[2026-03-05 20:00:48] -rw-r--r--. 1 boinc boinc         0 Mar  5 16:18 boinc_lockfile
[2026-03-05 20:00:48] -rw-r--r--. 1 boinc boinc      2569 Mar  5 16:19 pandaJob.out
[2026-03-05 20:00:48] -rw-------. 1 boinc boinc       413 Mar  5 16:24 workernode_map.json
[2026-03-05 20:00:48] -rw-------. 1 boinc boinc    998470 Mar  5 16:24 agis_schedconf.cvmfs.json
[2026-03-05 20:00:48] drwx------. 5 boinc boinc      4096 Mar  5 16:24 pilot3
[2026-03-05 20:00:48] -rw-------. 1 boinc boinc 182926487 Mar  5 19:58 HITS.48955015._002955.pool.root.1
[2026-03-05 20:00:48] -rw-r--r--. 1 boinc boinc       532 Mar  5 19:58 boinc_task_state.xml
[2026-03-05 20:00:48] -rw-------. 1 boinc boinc        95 Mar  5 19:59 pilot_heartbeat.json
[2026-03-05 20:00:48] -rw-------. 1 boinc boinc      1013 Mar  5 19:59 memory_monitor_summary.json
[2026-03-05 20:00:48] -rw-------. 1 boinc boinc   1521291 Mar  5 19:59 agis_ddmendpoints.agis.ALL.json
[2026-03-05 20:00:48] -rw-------. 1 boinc boinc    431659 Mar  5 19:59 log.48955015._002955.job.log.tgz.1
[2026-03-05 20:00:48] -rw-------. 1 boinc boinc      6317 Mar  5 19:59 heartbeat.json
[2026-03-05 20:00:48] -rw-r--r--. 1 boinc boinc        28 Mar  5 20:00 wrapper_checkpoint.txt
[2026-03-05 20:00:48] -rw-r--r--. 1 boinc boinc      8192 Mar  5 20:00 boinc_mmap_file
[2026-03-05 20:00:48] -rw-------. 1 boinc boinc      4953 Mar  5 20:00 pilotlog.txt
[2026-03-05 20:00:48] -rw-------. 1 boinc boinc   1812804 Mar  5 20:00 log.48955015._002955.job.log.1
[2026-03-05 20:00:48] -rw-------. 1 boinc boinc       357 Mar  5 20:00 output.list
[2026-03-05 20:00:48] -rw-r--r--. 1 boinc boinc       620 Mar  5 20:00 runtime_log
[2026-03-05 20:00:48] -rw-------. 1 boinc boinc   2263040 Mar  5 20:00 result.tar.gz
[2026-03-05 20:00:48] -rw-r--r--. 1 boinc boinc      8832 Mar  5 20:00 runtime_log.err
[2026-03-05 20:00:48] -rw-------. 1 boinc boinc       654 Mar  5 20:00 NhpMDmjeDI9n9Rq4apOajLDm4fhM0noT9bVooX4SDm6VKLDm1IsA3m.diag
[2026-03-05 20:00:48] -rw-r--r--. 1 boinc boinc     20793 Mar  5 20:00 stderr.txt
[2026-03-05 20:00:48] HITS file was successfully produced:
[2026-03-05 20:00:49] -rw-------. 1 boinc boinc 182926487 Mar  5 19:58 shared/HITS.pool.root.1
[2026-03-05 20:00:49]  *** Contents of shared directory: ***
[2026-03-05 20:00:49] total 607512
[2026-03-05 20:00:49] -rw-r--r--. 2 boinc boinc 436284215 Mar  5 16:18 ATLAS.root_0
[2026-03-05 20:00:49] -rw-r--r--. 2 boinc boinc     15845 Mar  5 16:18 start_atlas.sh
[2026-03-05 20:00:49] -rw-r--r--. 2 boinc boinc    597958 Mar  5 16:18 input.tar.gz
[2026-03-05 20:00:49] -rw-------. 1 boinc boinc 182926487 Mar  5 19:58 HITS.pool.root.1
[2026-03-05 20:00:49] -rw-------. 1 boinc boinc   2263040 Mar  5 20:00 result.tar.gz
20:00:50 (6048): run_atlas exited; CPU time 48705.313773
20:00:50 (6048): called boinc_finish(0)

</stderr_txt>
]]>

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