Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:02:05 (6173): wrapper (7.7.26015): starting
15:02:05 (6173): wrapper: running run_atlas (--nthreads 8)
[2026-03-05 15:02:05] Arguments: --nthreads 8
[2026-03-05 15:02:05] Threads: 8
[2026-03-05 15:02:05] Checking for CVMFS
[2026-03-05 15:02:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-05 15:02:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-05 15:02:10] Running cvmfs_config stat atlas.cern.ch
[2026-03-05 15:02:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-05 15:02:11] 2.11.2.0 23641 114708 133348 156921 2 54 15882739 25165824 96 130560 156 37084748 99.829 25187738 926 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-05 15:02:11] CVMFS is ok
[2026-03-05 15:02:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 15:02:11] Checking for apptainer binary...
[2026-03-05 15:02:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-05 15:02:11] Running /usr/bin/apptainer --version
[2026-03-05 15:02:11] apptainer version 1.3.2-1.el7
[2026-03-05 15:02:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 15:02:22] cg-vwn478.simple-grid.lan
[2026-03-05 15:02:22] apptainer works
[2026-03-05 15:02:22] Set ATHENA_PROC_NUMBER=8
[2026-03-05 15:02:22] Set ATHENA_CORE_NUMBER=8
[2026-03-05 15:02:22] Starting ATLAS job with PandaID=7038549326
[2026-03-05 15:02:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 18:54:31]  *** The last 200 lines of the pilot log: ***
[2026-03-05 18:54:31] 2026-03-05 17:53:33,041 | INFO     | sum of deviations: 90807601810.0
[2026-03-05 18:54:31] 2026-03-05 17:53:33,041 | INFO     | mean x: 1772726614.0
[2026-03-05 18:54:31] 2026-03-05 17:53:33,041 | INFO     | mean y: 2427895.202764977
[2026-03-05 18:54:31] 2026-03-05 17:53:33,041 | INFO     | intersect: -50803638162.12787
[2026-03-05 18:54:31] 2026-03-05 17:53:33,042 | INFO     | chi2: 9.604488872939646
[2026-03-05 18:54:31] 2026-03-05 17:53:33,042 | INFO     | sum of square deviations: 2954447953.0
[2026-03-05 18:54:31] 2026-03-05 17:53:33,044 | INFO     | sum of deviations: 102844687707.00002
[2026-03-05 18:54:31] 2026-03-05 17:53:33,044 | INFO     | mean x: 1772726461.5
[2026-03-05 18:54:31] 2026-03-05 17:53:33,044 | INFO     | mean y: 2436283.103773585
[2026-03-05 18:54:31] 2026-03-05 17:53:33,044 | INFO     | intersect: -61706384526.47462
[2026-03-05 18:54:31] 2026-03-05 17:53:33,044 | INFO     | chi2: 8.94085769820672
[2026-03-05 18:54:31] 2026-03-05 17:53:33,045 | INFO     | current chi2=8.94085769820672 (change=6.909593873367756 %)
[2026-03-05 18:54:31] 2026-03-05 17:53:33,045 | INFO     | right removable region: 211
[2026-03-05 18:54:31] 2026-03-05 17:53:33,045 | INFO     | sum of square deviations: 2954447953.0
[2026-03-05 18:54:31] 2026-03-05 17:53:33,047 | INFO     | sum of deviations: 14398114198.999992
[2026-03-05 18:54:31] 2026-03-05 17:53:33,047 | INFO     | mean x: 1772726766.5
[2026-03-05 18:54:31] 2026-03-05 17:53:33,047 | INFO     | mean y: 2482317.754716981
[2026-03-05 18:54:31] 2026-03-05 17:53:33,047 | INFO     | intersect: -8636668831.201399
[2026-03-05 18:54:31] 2026-03-05 17:53:33,048 | INFO     | chi2: 4.204347836279112
[2026-03-05 18:54:31] 2026-03-05 17:53:33,048 | INFO     | current chi2=4.204347836279112 (change=56.22517874819207 %)
[2026-03-05 18:54:31] 2026-03-05 17:53:33,048 | INFO     | sum of square deviations: 2750295288.0
[2026-03-05 18:54:31] 2026-03-05 17:53:33,050 | INFO     | sum of deviations: -44845986649.0
[2026-03-05 18:54:31] 2026-03-05 17:53:33,050 | INFO     | mean x: 1772726919.0
[2026-03-05 18:54:31] 2026-03-05 17:53:33,050 | INFO     | mean y: 2526500.420289855
[2026-03-05 18:54:31] 2026-03-05 17:53:33,050 | INFO     | intersect: 28908400021.953556
[2026-03-05 18:54:31] 2026-03-05 17:53:33,051 | INFO     | chi2: 1.1973421149923262
[2026-03-05 18:54:31] 2026-03-05 17:53:33,051 | INFO     | current chi2=1.1973421149923262 (change=71.52133549321206 %)
[2026-03-05 18:54:31] 2026-03-05 17:53:33,051 | INFO     | sum of square deviations: 2555770710.5
[2026-03-05 18:54:31] 2026-03-05 17:53:33,053 | INFO     | sum of deviations: -56581773141.5
[2026-03-05 18:54:31] 2026-03-05 17:53:33,053 | INFO     | mean x: 1772727071.5
[2026-03-05 18:54:31] 2026-03-05 17:53:33,053 | INFO     | mean y: 2535613.806930693
[2026-03-05 18:54:31] 2026-03-05 17:53:33,053 | INFO     | intersect: 39248638790.95211
[2026-03-05 18:54:31] 2026-03-05 17:53:33,053 | INFO     | chi2: 0.9775921506012151
[2026-03-05 18:54:31] 2026-03-05 17:53:33,054 | INFO     | current chi2=0.9775921506012151 (change=18.353147495569345 %)
[2026-03-05 18:54:31] 2026-03-05 17:53:33,054 | INFO     | left removable region: 30
[2026-03-05 18:54:31] 2026-03-05 17:53:33,054 | INFO     | sum of square deviations: 1838657730.0
[2026-03-05 18:54:31] 2026-03-05 17:53:33,055 | INFO     | sum of deviations: -24853182420.000004
[2026-03-05 18:54:31] 2026-03-05 17:53:33,056 | INFO     | mean x: 1772727346.0
[2026-03-05 18:54:31] 2026-03-05 17:53:33,056 | INFO     | mean y: 2531837.082872928
[2026-03-05 18:54:31] 2026-03-05 17:53:33,056 | INFO     | intersect: 23964531611.26622
[2026-03-05 18:54:31] 2026-03-05 17:53:33,056 | INFO     | chi2: 0.16120795804659088
[2026-03-05 18:54:31] 2026-03-05 17:53:33,056 | INFO     | current memory leak: -13.52 B/s (using 181 data points, chi2=0.16)
[2026-03-05 18:54:31] 2026-03-05 17:53:33,057 | INFO     | could have reported an average CPU frequency of 2249 MHz (11 samples)
[2026-03-05 18:54:31] 2026-03-05 17:53:33,057 | INFO     | ..............................
[2026-03-05 18:54:31] 2026-03-05 17:53:33,057 | INFO     | . Timing measurements:
[2026-03-05 18:54:31] 2026-03-05 17:53:33,057 | INFO     | . get job = 0 s
[2026-03-05 18:54:31] 2026-03-05 17:53:33,057 | INFO     | . initial setup = 124 s
[2026-03-05 18:54:31] 2026-03-05 17:53:33,057 | INFO     | . payload setup = 146 s
[2026-03-05 18:54:31] 2026-03-05 17:53:33,057 | INFO     | . stage-in = 0 s
[2026-03-05 18:54:31] 2026-03-05 17:53:33,058 | INFO     | . payload execution = 13309 s
[2026-03-05 18:54:31] 2026-03-05 17:53:33,058 | INFO     | . stage-out = 2 s
[2026-03-05 18:54:31] 2026-03-05 17:53:33,058 | INFO     | . log creation = 0 s
[2026-03-05 18:54:31] 2026-03-05 17:53:33,058 | INFO     | ..............................
[2026-03-05 18:54:31] 2026-03-05 17:53:33,166 | INFO     | 
[2026-03-05 18:54:31] 2026-03-05 17:53:33,166 | INFO     | job summary report
[2026-03-05 18:54:31] 2026-03-05 17:53:33,166 | INFO     | --------------------------------------------------
[2026-03-05 18:54:31] 2026-03-05 17:53:33,166 | INFO     | PanDA job id: 7038549326
[2026-03-05 18:54:31] 2026-03-05 17:53:33,166 | INFO     | task id: 48955010
[2026-03-05 18:54:31] 2026-03-05 17:53:33,166 | INFO     | errors: (none)
[2026-03-05 18:54:31] 2026-03-05 17:53:33,166 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-05 18:54:31] 2026-03-05 17:53:33,167 | INFO     | pilot state: finished 
[2026-03-05 18:54:31] 2026-03-05 17:53:33,167 | INFO     | transexitcode: 0
[2026-03-05 18:54:31] 2026-03-05 17:53:33,167 | INFO     | exeerrorcode: 0
[2026-03-05 18:54:31] 2026-03-05 17:53:33,167 | INFO     | exeerrordiag: 
[2026-03-05 18:54:31] 2026-03-05 17:53:33,167 | INFO     | exitcode: 0
[2026-03-05 18:54:31] 2026-03-05 17:53:33,167 | INFO     | exitmsg: OK
[2026-03-05 18:54:31] 2026-03-05 17:53:33,167 | INFO     | cpuconsumptiontime: 49434 s
[2026-03-05 18:54:31] 2026-03-05 17:53:33,167 | INFO     | nevents: 400
[2026-03-05 18:54:31] 2026-03-05 17:53:33,167 | INFO     | neventsw: 0
[2026-03-05 18:54:31] 2026-03-05 17:53:33,167 | INFO     | pid: 14594
[2026-03-05 18:54:31] 2026-03-05 17:53:33,167 | INFO     | pgrp: 14594
[2026-03-05 18:54:31] 2026-03-05 17:53:33,167 | INFO     | corecount: 8
[2026-03-05 18:54:31] 2026-03-05 17:53:33,168 | INFO     | event service: False
[2026-03-05 18:54:31] 2026-03-05 17:53:33,168 | INFO     | sizes: {0: 2295259, 1: 2255923, 2: 2295804, 12: 2295804, 13460: 2326058, 13463: 2335056, 13464: 2335434}
[2026-03-05 18:54:31] 2026-03-05 17:53:33,168 | INFO     | --------------------------------------------------
[2026-03-05 18:54:31] 2026-03-05 17:53:33,168 | INFO     | 
[2026-03-05 18:54:31] 2026-03-05 17:53:33,168 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-03-05 18:54:31] 2026-03-05 17:53:33,468 | WARNING  | process 14594 can no longer be monitored (due to stat problems) - aborting
[2026-03-05 18:54:31] 2026-03-05 17:53:33,469 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-7038549326/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 18:54:31] 2026-03-05 17:53:33,470 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3420944 B
[2026-03-05 18:54:31] 2026-03-05 17:53:33,470 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16078 B
[2026-03-05 18:54:31] 2026-03-05 17:53:33,470 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-03-05 18:54:31] 2026-03-05 17:53:33,715 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-05 18:54:31] 2026-03-05 17:53:33,715 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-05 18:54:31] 2026-03-05 17:53:33,715 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-05 18:54:31] 2026-03-05 17:53:33,716 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-05 18:54:31] 2026-03-05 17:53:33,716 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-05 18:54:31] 2026-03-05 17:53:33,716 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-05 18:54:31] 2026-03-05 17:53:33,716 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-05 18:54:31] 2026-03-05 17:53:33,716 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-05 18:54:31] 2026-03-05 17:53:33,716 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-05 18:54:31] 2026-03-05 17:53:33,716 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-05 18:54:31] 2026-03-05 17:53:33,716 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-05 18:54:31] 2026-03-05 17:53:33,716 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-05 18:54:31] 2026-03-05 17:53:33,717 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-05 18:54:31] 2026-03-05 17:53:33,717 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-05 18:54:31] 2026-03-05 17:53:33,717 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-05 18:54:31] 2026-03-05 17:53:33,717 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-05 18:54:31] 2026-03-05 17:53:33,717 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-05 18:54:31] 2026-03-05 17:53:33,717 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-05 18:54:31] 2026-03-05 17:53:33,717 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-05 18:54:31] 2026-03-05 17:53:33,717 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-05 18:54:31] 2026-03-05 17:53:33,717 | INFO     | job 7038549326 has completed (purged errors)
[2026-03-05 18:54:31] 2026-03-05 17:53:33,718 | INFO     | overall cleanup function is called
[2026-03-05 18:54:31] 2026-03-05 17:53:33,770 | INFO     | sufficient remaining disk space (495467888640 B)
[2026-03-05 18:54:31] 2026-03-05 17:53:33,770 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-05 18:54:31] 2026-03-05 17:53:33,771 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/4/PanDA_Pilot-7038549326/HITS.48955010._004216.pool.root.1 since it does not exist
[2026-03-05 18:54:31] 2026-03-05 17:53:33,859 | INFO     | number of running child processes to parent process 14594: 1
[2026-03-05 18:54:31] 2026-03-05 17:53:33,859 | INFO     | maximum number of monitored processes: 10
[2026-03-05 18:54:31] 2026-03-05 17:53:33,859 | INFO     | aborting job monitoring since job object (job id=7038549326) has expired
[2026-03-05 18:54:31] 2026-03-05 17:53:34,726 | INFO     | --- collectZombieJob: --- 10, [14594]
[2026-03-05 18:54:31] 2026-03-05 17:53:34,727 | INFO     | zombie collector waiting for pid 14594
[2026-03-05 18:54:31] 2026-03-05 17:53:34,727 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 18:54:31] 2026-03-05 17:53:34,727 | INFO     | collected zombie processes
[2026-03-05 18:54:31] 2026-03-05 17:53:34,727 | INFO     | will attempt to kill all subprocesses of pid=14594
[2026-03-05 18:54:31] 2026-03-05 17:53:34,794 | INFO     | process IDs to be killed: [14594] (in reverse order)
[2026-03-05 18:54:31] 2026-03-05 17:53:35,598 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 18:54:31] 2026-03-05 17:53:35,599 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 18:54:31] 2026-03-05 17:53:35,601 | INFO     | did not find any defunct processes belonging to 14594
[2026-03-05 18:54:31] 2026-03-05 17:53:35,602 | INFO     | did not find any defunct processes belonging to 14594
[2026-03-05 18:54:31] 2026-03-05 17:53:35,602 | INFO     | ready for new job
[2026-03-05 18:54:31] 2026-03-05 17:53:35,603 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 18:54:31] 2026-03-05 17:53:35,612 | INFO     | **************************************
[2026-03-05 18:54:31] 2026-03-05 17:53:35,612 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 18:54:31] 2026-03-05 17:53:35,612 | INFO     | **************************************
[2026-03-05 18:54:31] 2026-03-05 17:53:35,612 | INFO     | 
[2026-03-05 18:54:31] 2026-03-05 17:53:35,613 | INFO     | pilot is running in a VM
[2026-03-05 18:54:31] 2026-03-05 17:53:35,613 | INFO     | architecture information:
[2026-03-05 18:54:31] 2026-03-05 17:53:35,614 | INFO     | executing command: cat /etc/os-release
[2026-03-05 18:54:31] 2026-03-05 17:53:35,894 | INFO     | cat /etc/os-release:
[2026-03-05 18:54:31] NAME="CentOS Linux"
[2026-03-05 18:54:31] VERSION="7 (Core)"
[2026-03-05 18:54:31] ID="centos"
[2026-03-05 18:54:31] ID_LIKE="rhel fedora"
[2026-03-05 18:54:31] VERSION_ID="7"
[2026-03-05 18:54:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 18:54:31] ANSI_COLOR="0;31"
[2026-03-05 18:54:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 18:54:31] HOME_URL="https://www.centos.org/"
[2026-03-05 18:54:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 18:54:31] 
[2026-03-05 18:54:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 18:54:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 18:54:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 18:54:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 18:54:31] 
[2026-03-05 18:54:31] 2026-03-05 17:53:35,895 | INFO     | **************************************
[2026-03-05 18:54:31] 2026-03-05 17:53:36,398 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-03-05 18:54:31] 2026-03-05 17:53:36,655 | INFO     | sufficient remaining disk space (495471034368 B)
[2026-03-05 18:54:31] 2026-03-05 17:53:36,655 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 18:54:31] 2026-03-05 17:53:36,656 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 18:54:31] 2026-03-05 17:53:36,656 | INFO     | update_server=False
[2026-03-05 18:54:31] 2026-03-05 17:53:36,656 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 18:54:31] 2026-03-05 17:53:36,656 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 18:54:31] 2026-03-05 17:53:36,953 | INFO     | all data control threads have been joined
[2026-03-05 18:54:31] 2026-03-05 17:53:37,370 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 18:54:31] 2026-03-05 17:53:37,371 | INFO     | aborting loop
[2026-03-05 18:54:31] 2026-03-05 17:53:37,395 | INFO     | all job control threads have been joined
[2026-03-05 18:54:31] 2026-03-05 17:53:37,662 | INFO     | [job] retrieve thread has finished
[2026-03-05 18:54:31] 2026-03-05 17:53:37,780 | INFO     | all payload control threads have been joined
[2026-03-05 18:54:31] 2026-03-05 17:53:37,784 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 18:54:31] 2026-03-05 17:53:37,846 | INFO     | [job] validate thread has finished
[2026-03-05 18:54:31] 2026-03-05 17:53:37,960 | INFO     | [data] control thread has finished
[2026-03-05 18:54:31] 2026-03-05 17:53:38,099 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 18:54:31] 2026-03-05 17:53:38,181 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 18:54:31] 2026-03-05 17:53:38,330 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 18:54:31] 2026-03-05 17:53:38,377 | INFO     | [job] job monitor thread has finished
[2026-03-05 18:54:31] 2026-03-05 17:53:38,402 | INFO     | [job] control thread has finished
[2026-03-05 18:54:31] 2026-03-05 17:53:38,664 | INFO     | [data] copytool_out thread has finished
[2026-03-05 18:54:31] 2026-03-05 17:53:38,671 | INFO     | [data] copytool_in thread has finished
[2026-03-05 18:54:31] 2026-03-05 17:53:38,787 | INFO     | [payload] control thread has finished
[2026-03-05 18:54:31] 2026-03-05 17:53:38,904 | INFO     | [payload] validate_post thread has finished
[2026-03-05 18:54:31] 2026-03-05 17:53:39,034 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 18:54:31] 2026-03-05 17:53:39,076 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 18:54:31] 2026-03-05 17:53:39,124 | INFO     | [payload] failed_post thread has finished
[2026-03-05 18:54:31] 2026-03-05 17:53:39,188 | INFO     | [job] queue monitor thread has finished
[2026-03-05 18:54:31] 2026-03-05 17:53:43,044 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 18:54:31] 2026-03-05 17:54:04,890 | INFO     | PID=10148 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-05 18:54:31] 2026-03-05 17:54:04,890 | INFO     | .. there are 2 such processes running
[2026-03-05 18:54:31] 2026-03-05 17:54:04,891 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 18:54:31] 2026-03-05 17:54:04,891 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 18:54:31] 2026-03-05 17:54:04,891 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 18:54:31] 2026-03-05 17:54:19,733 | INFO     | [monitor] cgroup control has ended
[2026-03-05 18:54:31] 2026-03-05 17:54:21,250 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140275641734976)>', '<ExcThread(monitor, started 140275351537408)>']
[2026-03-05 18:54:31] 2026-03-05 17:54:21,991 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 18:54:31] 2026-03-05 17:54:21,992 | INFO     | [monitor] control thread has ended
[2026-03-05 18:54:31] 2026-03-05 17:54:26,275 | INFO     | all workflow threads have been joined
[2026-03-05 18:54:31] 2026-03-05 17:54:26,276 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 18:54:31] 2026-03-05 17:54:26,276 | INFO     | traces error code: 0
[2026-03-05 18:54:31] 2026-03-05 17:54:26,276 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 18:54:31] 2026-03-05 17:54:26,692 [wrapper] ==== pilot stdout END ====
[2026-03-05 18:54:31] 2026-03-05 17:54:26,748 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 18:54:31] 2026-03-05 17:54:26,855 [wrapper] pilotpid: 10148
[2026-03-05 18:54:31] 2026-03-05 17:54:26,957 [wrapper] Pilot exit status: 0
[2026-03-05 18:54:31] 2026-03-05 17:54:27,347 [wrapper] pandaids: 7038549326
[2026-03-05 18:54:31] 2026-03-05 17:54:28,394 [wrapper] cleanup supervisor_pilot 20694 10149
[2026-03-05 18:54:31] 2026-03-05 17:54:28,519 [wrapper] Test setup, not cleaning
[2026-03-05 18:54:31] 2026-03-05 17:54:28,638 [wrapper] apfmon messages muted
[2026-03-05 18:54:31] 2026-03-05 17:54:28,788 [wrapper] ==== wrapper stdout END ====
[2026-03-05 18:54:31] 2026-03-05 17:54:28,832 [wrapper] ==== wrapper stderr END ====
[2026-03-05 18:54:31]  *** Error codes and diagnostics ***
[2026-03-05 18:54:31]     "exeErrorCode": 0,
[2026-03-05 18:54:31]     "exeErrorDiag": "",
[2026-03-05 18:54:31]     "pilotErrorCode": 0,
[2026-03-05 18:54:31]     "pilotErrorDiag": "",
[2026-03-05 18:54:31]  *** Listing of results directory ***
[2026-03-05 18:54:31] total 620844
[2026-03-05 18:54:31] -rw-r--r--. 1 boinc boinc    584627 Mar  5 02:43 pilot3.tar.gz
[2026-03-05 18:54:31] -rwx------. 1 boinc boinc     36322 Mar  5 02:46 runpilot2-wrapper.sh
[2026-03-05 18:54:31] -rw-r--r--. 1 boinc boinc      5111 Mar  5 02:47 queuedata.json
[2026-03-05 18:54:31] -rw-r--r--. 1 boinc boinc       100 Mar  5 15:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 18:54:31] -rwxr-xr-x. 1 boinc boinc      7986 Mar  5 15:02 run_atlas
[2026-03-05 18:54:31] -rw-r--r--. 1 boinc boinc       105 Mar  5 15:02 job.xml
[2026-03-05 18:54:31] -rw-r--r--. 1 boinc boinc      6391 Mar  5 15:02 init_data.xml
[2026-03-05 18:54:31] -rw-r--r--. 2 boinc boinc 443468995 Mar  5 15:02 EVNT.46701403._001085.pool.root.1
[2026-03-05 18:54:31] -rw-r--r--. 2 boinc boinc     15845 Mar  5 15:02 start_atlas.sh
[2026-03-05 18:54:31] drwxrwx--x. 2 boinc boinc        68 Mar  5 15:02 shared
[2026-03-05 18:54:31] -rw-r--r--. 2 boinc boinc    597949 Mar  5 15:02 input.tar.gz
[2026-03-05 18:54:31] -rw-r--r--. 1 boinc boinc         0 Mar  5 15:02 boinc_lockfile
[2026-03-05 18:54:31] -rw-r--r--. 1 boinc boinc      2560 Mar  5 15:02 pandaJob.out
[2026-03-05 18:54:31] -rw-------. 1 boinc boinc       415 Mar  5 15:08 workernode_map.json
[2026-03-05 18:54:31] -rw-------. 1 boinc boinc    998452 Mar  5 15:08 agis_schedconf.cvmfs.json
[2026-03-05 18:54:31] drwx------. 5 boinc boinc      4096 Mar  5 15:08 pilot3
[2026-03-05 18:54:31] -rw-------. 1 boinc boinc 183647187 Mar  5 18:52 HITS.48955010._004216.pool.root.1
[2026-03-05 18:54:31] -rw-r--r--. 1 boinc boinc       532 Mar  5 18:52 boinc_task_state.xml
[2026-03-05 18:54:31] -rw-------. 1 boinc boinc        95 Mar  5 18:53 pilot_heartbeat.json
[2026-03-05 18:54:31] -rw-------. 1 boinc boinc      1021 Mar  5 18:53 memory_monitor_summary.json
[2026-03-05 18:54:31] -rw-------. 1 boinc boinc   1521291 Mar  5 18:53 agis_ddmendpoints.agis.ALL.json
[2026-03-05 18:54:31] -rw-------. 1 boinc boinc    454531 Mar  5 18:53 log.48955010._004216.job.log.tgz.1
[2026-03-05 18:54:31] -rw-------. 1 boinc boinc      6325 Mar  5 18:53 heartbeat.json
[2026-03-05 18:54:31] -rw-r--r--. 1 boinc boinc      8192 Mar  5 18:54 boinc_mmap_file
[2026-03-05 18:54:31] -rw-r--r--. 1 boinc boinc        28 Mar  5 18:54 wrapper_checkpoint.txt
[2026-03-05 18:54:31] -rw-------. 1 boinc boinc      4880 Mar  5 18:54 pilotlog.txt
[2026-03-05 18:54:31] -rw-------. 1 boinc boinc   1899560 Mar  5 18:54 log.48955010._004216.job.log.1
[2026-03-05 18:54:31] -rw-------. 1 boinc boinc       357 Mar  5 18:54 output.list
[2026-03-05 18:54:31] -rw-r--r--. 1 boinc boinc       620 Mar  5 18:54 runtime_log
[2026-03-05 18:54:31] -rw-------. 1 boinc boinc   2375680 Mar  5 18:54 result.tar.gz
[2026-03-05 18:54:31] -rw-r--r--. 1 boinc boinc      8816 Mar  5 18:54 runtime_log.err
[2026-03-05 18:54:31] -rw-------. 1 boinc boinc       656 Mar  5 18:54 NhGMDmSyCI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmnYMLDmkpXvwm.diag
[2026-03-05 18:54:31] -rw-r--r--. 1 boinc boinc     20985 Mar  5 18:54 stderr.txt
[2026-03-05 18:54:31] HITS file was successfully produced:
[2026-03-05 18:54:31] -rw-------. 1 boinc boinc 183647187 Mar  5 18:52 shared/HITS.pool.root.1
[2026-03-05 18:54:31]  *** Contents of shared directory: ***
[2026-03-05 18:54:31] total 615340
[2026-03-05 18:54:31] -rw-r--r--. 2 boinc boinc 443468995 Mar  5 15:02 ATLAS.root_0
[2026-03-05 18:54:31] -rw-r--r--. 2 boinc boinc     15845 Mar  5 15:02 start_atlas.sh
[2026-03-05 18:54:31] -rw-r--r--. 2 boinc boinc    597949 Mar  5 15:02 input.tar.gz
[2026-03-05 18:54:31] -rw-------. 1 boinc boinc 183647187 Mar  5 18:52 HITS.pool.root.1
[2026-03-05 18:54:31] -rw-------. 1 boinc boinc   2375680 Mar  5 18:54 result.tar.gz
18:54:33 (6173): run_atlas exited; CPU time 49571.534603
18:54:33 (6173): called boinc_finish(0)

</stderr_txt>
]]>

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