Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:08:42 (4017576): wrapper (7.7.26015): starting
00:08:42 (4017576): wrapper: running run_atlas (--nthreads 8)
[2026-03-05 00:08:42] Arguments: --nthreads 8
[2026-03-05 00:08:42] Threads: 8
[2026-03-05 00:08:42] Checking for CVMFS
[2026-03-05 00:08:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-05 00:08:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-05 00:08:44] Running cvmfs_config stat atlas.cern.ch
[2026-03-05 00:08:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-05 00:08:47] 2.13.3.0 7109 172148 652408 156904 2 48 19682779 21042176 28443 16776704 0 614342208 99.433 864973851 30982 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-05 00:08:47] CVMFS is ok
[2026-03-05 00:08:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-05 00:08:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-05 00:08:47] Further information can be found at the LHC@home message board.
[2026-03-05 00:08:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 00:08:47] Checking for apptainer binary...
[2026-03-05 00:08:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-05 00:08:47] Running /usr/bin/apptainer --version
[2026-03-05 00:08:48] apptainer version 1.4.5-2.el9
[2026-03-05 00:08:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 00:08:49] c-16-11.aglt2.org
[2026-03-05 00:08:49] apptainer works
[2026-03-05 00:08:50] Set ATHENA_PROC_NUMBER=8
[2026-03-05 00:08:50] Set ATHENA_CORE_NUMBER=8
[2026-03-05 00:08:50] Starting ATLAS job with PandaID=7038545884
[2026-03-05 00:08:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 18:40:40]  *** The last 200 lines of the pilot log: ***
[2026-03-07 18:40:41] 2026-03-07 23:32:24,738 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-07 18:40:41] 2026-03-07 23:32:25,658 | INFO     | sum of deviations: 9333381770472.172
[2026-03-07 18:40:41] 2026-03-07 23:32:25,658 | INFO     | mean x: 1772807151.448938
[2026-03-07 18:40:41] 2026-03-07 23:32:25,658 | INFO     | mean y: 2490879.6777578704
[2026-03-07 18:40:41] 2026-03-07 23:32:25,659 | INFO     | intersect: -892245477.8854631
[2026-03-07 18:40:41] 2026-03-07 23:32:25,663 | INFO     | chi2: 10.737452851905886
[2026-03-07 18:40:41] 2026-03-07 23:32:25,664 | INFO     | current chi2=10.737452851905886 (change=28.442159049430956 %)
[2026-03-07 18:40:41] 2026-03-07 23:32:25,669 | INFO     | sum of square deviations: 18422007479139.484
[2026-03-07 18:40:41] 2026-03-07 23:32:26,691 | INFO     | PID=4033426 has CPU usage=9.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-07 18:40:41] 2026-03-07 23:32:26,691 | INFO     | .. there are 43 such processes running
[2026-03-07 18:40:41] 2026-03-07 23:32:27,354 | INFO     | monitor loop #9246: job 0:7038545884 is in state 'finished'
[2026-03-07 18:40:41] 2026-03-07 23:32:27,354 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-07 18:40:41] 2026-03-07 23:32:27,821 | INFO     | time since job start (238804s) is within the limit (349056.0s)
[2026-03-07 18:40:41] 2026-03-07 23:32:28,455 | INFO     | sum of deviations: 8235910336716.242
[2026-03-07 18:40:41] 2026-03-07 23:32:28,456 | INFO     | mean x: 1772807303.9505382
[2026-03-07 18:40:41] 2026-03-07 23:32:28,481 | INFO     | mean y: 2493239.856227576
[2026-03-07 18:40:41] 2026-03-07 23:32:28,481 | INFO     | intersect: -790074129.1531302
[2026-03-07 18:40:41] 2026-03-07 23:32:28,496 | INFO     | chi2: 8.001536025834783
[2026-03-07 18:40:41] 2026-03-07 23:32:28,496 | INFO     | current chi2=8.001536025834783 (change=25.480128889091986 %)
[2026-03-07 18:40:41] 2026-03-07 23:32:28,515 | INFO     | sum of square deviations: 18351277419041.805
[2026-03-07 18:40:41] 2026-03-07 23:32:29,891 | INFO     | time since job start (238806s) is within the limit (349056.0s)
[2026-03-07 18:40:41] 2026-03-07 23:32:30,048 | INFO     | monitor loop #9247: job 0:7038545884 is in state 'finished'
[2026-03-07 18:40:41] 2026-03-07 23:32:30,048 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-07 18:40:41] 2026-03-07 23:32:31,958 | INFO     | time since job start (238808s) is within the limit (349056.0s)
[2026-03-07 18:40:41] 2026-03-07 23:32:32,550 | INFO     | sum of deviations: 7259504068935.602
[2026-03-07 18:40:41] 2026-03-07 23:32:32,551 | INFO     | mean x: 1772807456.4534256
[2026-03-07 18:40:41] 2026-03-07 23:32:32,551 | INFO     | mean y: 2495345.074929433
[2026-03-07 18:40:41] 2026-03-07 23:32:32,551 | INFO     | intersect: -698802044.1852344
[2026-03-07 18:40:41] 2026-03-07 23:32:32,606 | INFO     | chi2: 5.8582946952421135
[2026-03-07 18:40:41] 2026-03-07 23:32:32,606 | INFO     | current chi2=5.8582946952421135 (change=26.785373754148285 %)
[2026-03-07 18:40:41] 2026-03-07 23:32:32,662 | INFO     | monitor loop #9248: job 0:7038545884 is in state 'finished'
[2026-03-07 18:40:41] 2026-03-07 23:32:32,662 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-07 18:40:41] 2026-03-07 23:32:32,707 | INFO     | sum of square deviations: 18280729093354.406
[2026-03-07 18:40:41] 2026-03-07 23:32:34,020 | INFO     | time since job start (238811s) is within the limit (349056.0s)
[2026-03-07 18:40:41] 2026-03-07 23:32:35,351 | INFO     | monitor loop #9249: job 0:7038545884 is in state 'finished'
[2026-03-07 18:40:41] 2026-03-07 23:32:35,351 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-07 18:40:41] 2026-03-07 23:32:35,663 | INFO     | sum of deviations: 6498445546805.473
[2026-03-07 18:40:41] 2026-03-07 23:32:35,664 | INFO     | mean x: 1772807608.9558067
[2026-03-07 18:40:41] 2026-03-07 23:32:35,664 | INFO     | mean y: 2496990.0840184996
[2026-03-07 18:40:41] 2026-03-07 23:32:35,664 | INFO     | intersect: -627701819.4344578
[2026-03-07 18:40:41] 2026-03-07 23:32:35,669 | INFO     | chi2: 4.5525232360520835
[2026-03-07 18:40:41] 2026-03-07 23:32:35,669 | INFO     | current chi2=4.5525232360520835 (change=22.289275755460515 %)
[2026-03-07 18:40:41] 2026-03-07 23:32:35,670 | INFO     | left removable region: 40
[2026-03-07 18:40:41] 2026-03-07 23:32:35,725 | INFO     | sum of square deviations: 17916797554971.73
[2026-03-07 18:40:41] 2026-03-07 23:32:36,352 | INFO     | time since job start (238813s) is within the limit (349056.0s)
[2026-03-07 18:40:41] 2026-03-07 23:32:38,021 | INFO     | monitor loop #9250: job 0:7038545884 is in state 'finished'
[2026-03-07 18:40:41] 2026-03-07 23:32:38,021 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-07 18:40:41] 2026-03-07 23:32:38,433 | INFO     | time since job start (238815s) is within the limit (349056.0s)
[2026-03-07 18:40:41] 2026-03-07 23:32:39,610 | INFO     | sum of deviations: 5801590979513.41
[2026-03-07 18:40:41] 2026-03-07 23:32:39,611 | INFO     | mean x: 1772808035.9668908
[2026-03-07 18:40:41] 2026-03-07 23:32:39,611 | INFO     | mean y: 2501690.0501810657
[2026-03-07 18:40:41] 2026-03-07 23:32:39,611 | INFO     | intersect: -571546606.1544265
[2026-03-07 18:40:41] 2026-03-07 23:32:39,636 | INFO     | chi2: 1.3609243177577024
[2026-03-07 18:40:41] 2026-03-07 23:32:39,636 | INFO     | current memory leak: 0.32 B/s (using 3866 data points, chi2=1.36)
[2026-03-07 18:40:41] 2026-03-07 23:32:39,687 | INFO     | could have reported an average CPU frequency of 2900 MHz (134 samples)
[2026-03-07 18:40:41] 2026-03-07 23:32:39,687 | INFO     | ..............................
[2026-03-07 18:40:41] 2026-03-07 23:32:39,687 | INFO     | . Timing measurements:
[2026-03-07 18:40:41] 2026-03-07 23:32:39,688 | INFO     | . get job = 1 s
[2026-03-07 18:40:41] 2026-03-07 23:32:39,688 | INFO     | . initial setup = 76 s
[2026-03-07 18:40:41] 2026-03-07 23:32:39,688 | INFO     | . payload setup = 93 s
[2026-03-07 18:40:41] 2026-03-07 23:32:39,688 | INFO     | . stage-in = 0 s
[2026-03-07 18:40:41] 2026-03-07 23:32:39,688 | INFO     | . payload execution = 238644 s
[2026-03-07 18:40:41] 2026-03-07 23:32:39,688 | INFO     | . stage-out = 17 s
[2026-03-07 18:40:41] 2026-03-07 23:32:39,689 | INFO     | . log creation = 6 s
[2026-03-07 18:40:41] 2026-03-07 23:32:39,689 | INFO     | ..............................
[2026-03-07 18:40:41] 2026-03-07 23:32:39,939 | INFO     | 
[2026-03-07 18:40:41] 2026-03-07 23:32:39,940 | INFO     | job summary report
[2026-03-07 18:40:41] 2026-03-07 23:32:39,940 | INFO     | --------------------------------------------------
[2026-03-07 18:40:41] 2026-03-07 23:32:39,940 | INFO     | PanDA job id: 7038545884
[2026-03-07 18:40:41] 2026-03-07 23:32:39,940 | INFO     | task id: 48955010
[2026-03-07 18:40:41] 2026-03-07 23:32:39,940 | INFO     | errors: (none)
[2026-03-07 18:40:41] 2026-03-07 23:32:39,941 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 18:40:41] 2026-03-07 23:32:39,941 | INFO     | pilot state: finished 
[2026-03-07 18:40:41] 2026-03-07 23:32:39,941 | INFO     | transexitcode: 0
[2026-03-07 18:40:41] 2026-03-07 23:32:39,941 | INFO     | exeerrorcode: 0
[2026-03-07 18:40:41] 2026-03-07 23:32:39,941 | INFO     | exeerrordiag: 
[2026-03-07 18:40:41] 2026-03-07 23:32:39,941 | INFO     | exitcode: 0
[2026-03-07 18:40:41] 2026-03-07 23:32:39,941 | INFO     | exitmsg: OK
[2026-03-07 18:40:41] 2026-03-07 23:32:39,942 | INFO     | cpuconsumptiontime: 72372 s
[2026-03-07 18:40:41] 2026-03-07 23:32:39,942 | INFO     | nevents: 400
[2026-03-07 18:40:41] 2026-03-07 23:32:39,942 | INFO     | neventsw: 0
[2026-03-07 18:40:41] 2026-03-07 23:32:39,942 | INFO     | pid: 4055269
[2026-03-07 18:40:41] 2026-03-07 23:32:39,942 | INFO     | pgrp: 4055269
[2026-03-07 18:40:41] 2026-03-07 23:32:39,942 | INFO     | corecount: 8
[2026-03-07 18:40:41] 2026-03-07 23:32:39,942 | INFO     | event service: False
[2026-03-07 18:40:41] 2026-03-07 23:32:39,943 | INFO     | sizes: {0: 2294656, 2: 2295341, 4: 2295341, 5: 2295830, 7: 2295858, 238743: 2419983, 238744: 2420110, 238766: 2429164, 238767: 2429220, 238809: 2429414}
[2026-03-07 18:40:41] 2026-03-07 23:32:39,943 | INFO     | --------------------------------------------------
[2026-03-07 18:40:41] 2026-03-07 23:32:39,943 | INFO     | 
[2026-03-07 18:40:41] 2026-03-07 23:32:39,943 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-03-07 18:40:41] 2026-03-07 23:32:40,057 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 18:40:41] 2026-03-07 23:32:40,058 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 18:40:41] 2026-03-07 23:32:40,058 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 18:40:41] 2026-03-07 23:32:40,058 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 18:40:41] 2026-03-07 23:32:40,058 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 18:40:41] 2026-03-07 23:32:40,058 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 18:40:41] 2026-03-07 23:32:40,058 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 18:40:41] 2026-03-07 23:32:40,059 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 18:40:41] 2026-03-07 23:32:40,059 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 18:40:41] 2026-03-07 23:32:40,060 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 18:40:41] 2026-03-07 23:32:40,060 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 18:40:41] 2026-03-07 23:32:40,060 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 18:40:41] 2026-03-07 23:32:40,060 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 18:40:41] 2026-03-07 23:32:40,061 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 18:40:41] 2026-03-07 23:32:40,061 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 18:40:41] 2026-03-07 23:32:40,061 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 18:40:41] 2026-03-07 23:32:40,061 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 18:40:41] 2026-03-07 23:32:40,061 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 18:40:41] 2026-03-07 23:32:40,061 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 18:40:41] 2026-03-07 23:32:40,061 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 18:40:41] 2026-03-07 23:32:40,062 | INFO     | job 7038545884 has completed (purged errors)
[2026-03-07 18:40:41] 2026-03-07 23:32:40,062 | INFO     | overall cleanup function is called
[2026-03-07 18:40:41] 2026-03-07 23:32:41,120 | INFO     | --- collectZombieJob: --- 10, [4055269]
[2026-03-07 18:40:41] 2026-03-07 23:32:41,120 | INFO     | zombie collector waiting for pid 4055269
[2026-03-07 18:40:41] 2026-03-07 23:32:41,120 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 18:40:41] 2026-03-07 23:32:41,121 | INFO     | collected zombie processes
[2026-03-07 18:40:41] 2026-03-07 23:32:41,121 | INFO     | will attempt to kill all subprocesses of pid=4055269
[2026-03-07 18:40:41] 2026-03-07 23:32:46,361 | INFO     | process IDs to be killed: [4055269] (in reverse order)
[2026-03-07 18:40:41] 2026-03-07 23:32:46,716 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 18:40:41] 2026-03-07 23:32:46,717 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 18:40:41] 2026-03-07 23:32:46,742 | INFO     | did not find any defunct processes belonging to 4055269
[2026-03-07 18:40:41] 2026-03-07 23:32:46,767 | INFO     | did not find any defunct processes belonging to 4055269
[2026-03-07 18:40:41] 2026-03-07 23:32:46,767 | INFO     | ready for new job
[2026-03-07 18:40:41] 2026-03-07 23:32:46,767 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 18:40:41] 2026-03-07 23:32:46,778 | INFO     | **************************************
[2026-03-07 18:40:41] 2026-03-07 23:32:46,778 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 18:40:41] 2026-03-07 23:32:46,778 | INFO     | **************************************
[2026-03-07 18:40:41] 2026-03-07 23:32:46,778 | INFO     | 
[2026-03-07 18:40:41] 2026-03-07 23:32:46,780 | INFO     | architecture information:
[2026-03-07 18:40:41] 2026-03-07 23:32:46,781 | INFO     | executing command: cat /etc/os-release
[2026-03-07 18:40:41] 2026-03-07 23:32:46,884 | INFO     | cat /etc/os-release:
[2026-03-07 18:40:41] NAME="CentOS Linux"
[2026-03-07 18:40:41] VERSION="7 (Core)"
[2026-03-07 18:40:41] ID="centos"
[2026-03-07 18:40:41] ID_LIKE="rhel fedora"
[2026-03-07 18:40:41] VERSION_ID="7"
[2026-03-07 18:40:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 18:40:41] ANSI_COLOR="0;31"
[2026-03-07 18:40:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 18:40:41] HOME_URL="https://www.centos.org/"
[2026-03-07 18:40:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 18:40:41] 
[2026-03-07 18:40:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 18:40:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 18:40:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 18:40:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 18:40:41] 
[2026-03-07 18:40:41] 2026-03-07 23:32:46,898 | INFO     | **************************************
[2026-03-07 18:40:41] 2026-03-07 23:32:47,403 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-03-07 18:40:41] 2026-03-07 23:32:47,458 | INFO     | sufficient remaining disk space (49619664896 B)
[2026-03-07 18:40:41] 2026-03-07 23:32:47,461 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 18:40:41] 2026-03-07 23:32:47,461 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 18:40:41] 2026-03-07 23:32:47,461 | INFO     | update_server=False
[2026-03-07 18:40:41] 2026-03-07 23:32:47,462 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 18:40:41] 2026-03-07 23:32:47,463 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 18:40:41] 2026-03-07 23:32:47,470 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 18:40:41] 2026-03-07 23:32:47,470 | INFO     | aborting loop
[2026-03-07 18:40:41] 2026-03-07 23:32:47,690 | INFO     | all job control threads have been joined
[2026-03-07 18:40:41] 2026-03-07 23:32:47,738 | INFO     | all payload control threads have been joined
[2026-03-07 18:40:41] 2026-03-07 23:32:47,888 | INFO     | all data control threads have been joined
[2026-03-07 18:40:41] 2026-03-07 23:32:48,244 | INFO     | [monitor] cgroup control has ended
[2026-03-07 18:40:41] 2026-03-07 23:32:48,469 | INFO     | [job] retrieve thread has finished
[2026-03-07 18:40:41] 2026-03-07 23:32:48,492 | INFO     | [job] job monitor thread has finished
[2026-03-07 18:40:41] 2026-03-07 23:32:48,652 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 18:40:41] 2026-03-07 23:32:48,653 | INFO     | [payload] validate_post thread has finished
[2026-03-07 18:40:41] 2026-03-07 23:32:48,695 | INFO     | [job] control thread has finished
[2026-03-07 18:40:41] 2026-03-07 23:32:48,754 | INFO     | [payload] control thread has finished
[2026-03-07 18:40:41] 2026-03-07 23:32:48,906 | INFO     | [data] control thread has finished
[2026-03-07 18:40:41] 2026-03-07 23:32:49,130 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 18:40:41] 2026-03-07 23:32:49,202 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 18:40:41] 2026-03-07 23:32:49,229 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 18:40:41] 2026-03-07 23:32:49,342 | INFO     | [payload] failed_post thread has finished
[2026-03-07 18:40:41] 2026-03-07 23:32:49,471 | INFO     | [data] copytool_out thread has finished
[2026-03-07 18:40:41] 2026-03-07 23:32:49,754 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 18:40:41] 2026-03-07 23:32:49,754 | INFO     | [job] validate thread has finished
[2026-03-07 18:40:41] 2026-03-07 23:32:49,761 | INFO     | [data] copytool_in thread has finished
[2026-03-07 18:40:41] 2026-03-07 23:32:50,235 | INFO     | [job] queue monitor thread has finished
[2026-03-07 18:40:41] 2026-03-07 23:32:50,446 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 18:40:41] 2026-03-07 23:32:54,548 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 18:40:41] 2026-03-07 23:32:56,135 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139671933302592)>', '<ExcThread(monitor, started 139671438870272)>']
[2026-03-07 18:40:41] 2026-03-07 23:33:01,199 | INFO     | all workflow threads have been joined
[2026-03-07 18:40:41] 2026-03-07 23:33:01,199 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 18:40:41] 2026-03-07 23:33:01,199 | INFO     | traces error code: 0
[2026-03-07 18:40:41] 2026-03-07 23:33:01,200 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 18:40:41] 2026-03-07 23:33:14,217 | INFO     | PID=4033426 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-07 18:40:41] 2026-03-07 23:33:14,217 | INFO     | .. there are 43 such processes running
[2026-03-07 18:40:41] 2026-03-07 23:33:14,224 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 18:40:41] 2026-03-07 23:33:14,224 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 18:40:41] 2026-03-07 23:33:14,225 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 18:40:41] 2026-03-07 23:33:14,225 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 18:40:41] 2026-03-07 23:33:14,225 | INFO     | [monitor] control thread has ended
[2026-03-07 18:40:41] 2026-03-07 23:33:14,944 [wrapper] ==== pilot stdout END ====
[2026-03-07 18:40:41] 2026-03-07 23:33:15,029 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 18:40:41] 2026-03-07 23:33:15,078 [wrapper] pilotpid: 4033426
[2026-03-07 18:40:41] 2026-03-07 23:33:15,136 [wrapper] Pilot exit status: 0
[2026-03-07 18:40:41] 2026-03-07 23:33:15,293 [wrapper] pandaids: 7038545884
[2026-03-07 18:40:41] 2026-03-07 23:33:15,534 [wrapper] cleanup supervisor_pilot 2990936 4033427
[2026-03-07 18:40:41] 2026-03-07 23:33:15,538 [wrapper] Test setup, not cleaning
[2026-03-07 18:40:41] 2026-03-07 23:33:15,542 [wrapper] apfmon messages muted
[2026-03-07 18:40:41] 2026-03-07 23:33:15,546 [wrapper] ==== wrapper stdout END ====
[2026-03-07 18:40:41] 2026-03-07 23:33:15,549 [wrapper] ==== wrapper stderr END ====
[2026-03-07 18:40:41]  *** Error codes and diagnostics ***
[2026-03-07 18:40:41]     "exeErrorCode": 0,
[2026-03-07 18:40:41]     "exeErrorDiag": "",
[2026-03-07 18:40:41]     "pilotErrorCode": 0,
[2026-03-07 18:40:41]     "pilotErrorDiag": "",
[2026-03-07 18:40:41]  *** Listing of results directory ***
[2026-03-07 18:40:41] total 660840
[2026-03-07 18:40:41] -rw-r--r--. 1 boincer umatlas    584627 Mar  4 19:15 pilot3.tar.gz
[2026-03-07 18:40:41] -rwx------. 1 boincer umatlas     36322 Mar  4 19:18 runpilot2-wrapper.sh
[2026-03-07 18:40:41] -rw-r--r--. 1 boincer umatlas      5111 Mar  4 19:20 queuedata.json
[2026-03-07 18:40:41] -rw-r--r--. 1 boincer umatlas       100 Mar  5 00:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 18:40:41] -rwxr-xr-x. 1 boincer umatlas      7986 Mar  5 00:08 run_atlas
[2026-03-07 18:40:41] -rw-r--r--. 1 boincer umatlas       105 Mar  5 00:08 job.xml
[2026-03-07 18:40:41] -rw-r--r--. 2 boincer umatlas 439210880 Mar  5 00:08 EVNT.46701403._001071.pool.root.1
[2026-03-07 18:40:41] -rw-r--r--. 2 boincer umatlas     15845 Mar  5 00:08 start_atlas.sh
[2026-03-07 18:40:41] drwxrwx--x. 2 boincer umatlas      4096 Mar  5 00:08 shared
[2026-03-07 18:40:41] -rw-r--r--. 2 boincer umatlas    597934 Mar  5 00:08 input.tar.gz
[2026-03-07 18:40:41] -rw-r--r--. 1 boincer umatlas         0 Mar  5 00:08 boinc_lockfile
[2026-03-07 18:40:41] -rw-r--r--. 1 boincer umatlas      2559 Mar  5 00:08 pandaJob.out
[2026-03-07 18:40:41] -rw-------. 1 boincer umatlas        57 Mar  5 00:08 setup.sh.local
[2026-03-07 18:40:41] -rw-------. 1 boincer umatlas       441 Mar  5 00:12 workernode_map.json
[2026-03-07 18:40:41] -rw-------. 1 boincer umatlas    997749 Mar  5 00:12 agis_schedconf.cvmfs.json
[2026-03-07 18:40:41] drwx------. 5 boincer umatlas      4096 Mar  5 00:12 pilot3
[2026-03-07 18:40:41] -rw-------. 1 boincer umatlas 182919220 Mar  7 18:28 HITS.48955010._003502.pool.root.1
[2026-03-07 18:40:41] -rw-r--r--. 1 boincer umatlas       531 Mar  7 18:29 boinc_task_state.xml
[2026-03-07 18:40:41] -rw-------. 1 boincer umatlas      1039 Mar  7 18:31 memory_monitor_summary.json
[2026-03-07 18:40:41] -rw-------. 1 boincer umatlas   1521291 Mar  7 18:31 agis_ddmendpoints.agis.ALL.json
[2026-03-07 18:40:41] -rw-------. 1 boincer umatlas   2722126 Mar  7 18:31 log.48955010._003502.job.log.tgz.1
[2026-03-07 18:40:41] -rw-------. 1 boincer umatlas      6385 Mar  7 18:32 heartbeat.json
[2026-03-07 18:40:41] -rw-------. 1 boincer umatlas        95 Mar  7 18:33 pilot_heartbeat.json
[2026-03-07 18:40:41] -rw-------. 1 boincer umatlas       823 Mar  7 18:33 pilotlog.txt
[2026-03-07 18:40:41] -rw-------. 1 boincer umatlas  22591411 Mar  7 18:33 log.48955010._003502.job.log.1
[2026-03-07 18:40:41] -rw-------. 1 boincer umatlas       357 Mar  7 18:33 output.list
[2026-03-07 18:40:41] -rw-r--r--. 1 boincer umatlas       620 Mar  7 18:33 runtime_log
[2026-03-07 18:40:41] -rw-------. 1 boincer umatlas  25333760 Mar  7 18:33 result.tar.gz
[2026-03-07 18:40:41] -rw-r--r--. 1 boincer umatlas      9338 Mar  7 18:33 runtime_log.err
[2026-03-07 18:40:41] -rw-------. 1 boincer umatlas       659 Mar  7 18:33 1mtKDmibBI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmvQMLDmWlujlm.diag
[2026-03-07 18:40:41] -rw-r--r--. 1 boincer umatlas      6523 Mar  7 18:36 init_data.xml
[2026-03-07 18:40:41] -rw-r--r--. 1 boincer umatlas        27 Mar  7 18:40 wrapper_checkpoint.txt
[2026-03-07 18:40:41] -rw-r--r--. 1 boincer umatlas      8192 Mar  7 18:40 boinc_mmap_file
[2026-03-07 18:40:41] -rw-r--r--. 1 boincer umatlas     21734 Mar  7 18:40 stderr.txt
[2026-03-07 18:40:41] HITS file was successfully produced:
[2026-03-07 18:40:41] -rw-------. 1 boincer umatlas 182919220 Mar  7 18:28 shared/HITS.pool.root.1
[2026-03-07 18:40:41]  *** Contents of shared directory: ***
[2026-03-07 18:40:41] total 632904
[2026-03-07 18:40:41] -rw-r--r--. 2 boincer umatlas 439210880 Mar  5 00:08 ATLAS.root_0
[2026-03-07 18:40:41] -rw-r--r--. 2 boincer umatlas     15845 Mar  5 00:08 start_atlas.sh
[2026-03-07 18:40:41] -rw-r--r--. 2 boincer umatlas    597934 Mar  5 00:08 input.tar.gz
[2026-03-07 18:40:41] -rw-------. 1 boincer umatlas 182919220 Mar  7 18:28 HITS.pool.root.1
[2026-03-07 18:40:41] -rw-------. 1 boincer umatlas  25333760 Mar  7 18:33 result.tar.gz
18:40:43 (4017576): run_atlas exited; CPU time 85947.183679
18:40:43 (4017576): called boinc_finish(0)

</stderr_txt>
]]>

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