Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:43:35 (3203823): wrapper (7.7.26015): starting
19:43:35 (3203823): wrapper: running run_atlas (--nthreads 12)
[2026-03-04 19:43:35] Arguments: --nthreads 12
[2026-03-04 19:43:35] Threads: 12
[2026-03-04 19:43:35] Checking for CVMFS
[2026-03-04 19:43:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-04 19:43:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-04 19:43:36] Running cvmfs_config stat atlas.cern.ch
[2026-03-04 19:43:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-04 19:43:37] 2.11.5.0 3145084 135245 343404 156901 3 629 39783087 45568000 29416 130560 1 1245411075 99.824 675094109 19063 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2026-03-04 19:43:37] CVMFS is ok
[2026-03-04 19:43:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 19:43:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 19:43:37] Further information can be found at the LHC@home message board.
[2026-03-04 19:43:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 19:43:37] Checking for apptainer binary...
[2026-03-04 19:43:37] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-04 19:43:37] Running /usr/bin/apptainer --version
[2026-03-04 19:43:37] apptainer version 1.4.1-1.el9
[2026-03-04 19:43:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 19:43:38] wns0055.triumf.lcg
[2026-03-04 19:43:38] apptainer works
[2026-03-04 19:43:38] Set ATHENA_PROC_NUMBER=12
[2026-03-04 19:43:38] Set ATHENA_CORE_NUMBER=12
[2026-03-04 19:43:38] Starting ATLAS job with PandaID=7038528494
[2026-03-04 19:43:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 19:48:49]  *** The last 200 lines of the pilot log: ***
[2026-03-04 19:48:49] 2026-03-05 03:48:14,099 | WARNING  | wrong length of table data, x=[1772682324.0], y=[1527.0] (must be same and length>=4)
[2026-03-04 19:48:49] 2026-03-05 03:48:14,099 | INFO     | could have reported an average CPU frequency of 2792 MHz (4 samples)
[2026-03-04 19:48:49] 2026-03-05 03:48:14,099 | INFO     | ..............................
[2026-03-04 19:48:49] 2026-03-05 03:48:14,099 | INFO     | . Timing measurements:
[2026-03-04 19:48:49] 2026-03-05 03:48:14,099 | INFO     | . get job = 0 s
[2026-03-04 19:48:49] 2026-03-05 03:48:14,100 | INFO     | . initial setup = 22 s
[2026-03-04 19:48:49] 2026-03-05 03:48:14,100 | INFO     | . payload setup = 25 s
[2026-03-04 19:48:49] 2026-03-05 03:48:14,100 | INFO     | . stage-in = 0 s
[2026-03-04 19:48:49] 2026-03-05 03:48:14,100 | INFO     | . payload execution = 64 s
[2026-03-04 19:48:49] 2026-03-05 03:48:14,100 | INFO     | . stage-out = 0 s
[2026-03-04 19:48:49] 2026-03-05 03:48:14,100 | INFO     | . log creation = 0 s
[2026-03-04 19:48:49] 2026-03-05 03:48:14,100 | INFO     | ..............................
[2026-03-04 19:48:49] 2026-03-05 03:48:14,100 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-04 19:48:49] 2026-03-05 03:48:14,100 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7038528494/pilotlog.txt
[2026-03-04 19:48:49] 2026-03-05 03:48:14,200 | INFO     | time since job start (228s) is within the limit (349056.0s)
[2026-03-04 19:48:49] 2026-03-05 03:48:14,293 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-03-04 19:48:49] - Log from pilotlog.txt -
[2026-03-04 19:48:49] 2026-03-05 03:48:14,098 | INFO     | extracted standard info from prmon json
[2026-03-04 19:48:49] 2026-03-05 03:48:14,098 | INFO     | extracted standard memory fields from prmon json
[2026-03-04 19:48:49] 2026-03-05 03:48:14,099 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-04 19:48:49] 2026-03-05 03:48:14,099 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-04 19:48:49] 2026-03-05 03:48:14,099 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-04 19:48:49] 2026-03-05 03:48:14,099 | WARNING  | wrong length of table data, x=[1772682324.0], y=[1527.0] (must be same and length>=4)
[2026-03-04 19:48:49] 2026-03-05 03:48:14,099 | INFO     | could have reported an average CPU frequency of 2792 MHz (4 samples)
[2026-03-04 19:48:49] 2026-03-05 03:48:14,099 | INFO     | ..............................
[2026-03-04 19:48:49] 2026-03-05 03:48:14,099 | INFO     | . Timing measurements:
[2026-03-04 19:48:49] 2026-03-05 03:48:14,099 | INFO     | . get job = 0 s
[2026-03-04 19:48:49] 2026-03-05 03:48:14,100 | INFO     | . initial setup = 22 s
[2026-03-04 19:48:49] 2026-03-05 03:48:14,100 | INFO     | . payload setup = 25 s
[2026-03-04 19:48:49] 2026-03-05 03:48:14,100 | INFO     | . stage-in = 0 s
[2026-03-04 19:48:49] 2026-03-05 03:48:14,100 | INFO     | . payload execution = 64 s
[2026-03-04 19:48:49] 2026-03-05 03:48:14,100 | INFO     | . stage-out = 0 s
[2026-03-04 19:48:49] 2026-03-05 03:48:14,100 | INFO     | . log creation = 0 s
[2026-03-04 19:48:49] 2026-03-05 03:48:14,100 | INFO     | ..............................
[2026-03-04 19:48:49] 2026-03-05 03:48:14,100 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-04 19:48:49] 2026-03-05 03:48:14,100 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7038528494/pilotlog.txt
[2026-03-04 19:48:49] 2026-03-05 03:48:14,200 | INFO     | time since job start (228s) is within the limit (349056.0s)
[2026-03-04 19:48:49] 2026-03-05 03:48:14,294 | WARNING  | 
[2026-03-04 19:48:49] [begin log extracts]
[2026-03-04 19:48:49] - Log from pilotlog.txt -
[2026-03-04 19:48:49] 2026-03-05 03:48:14,098 | INFO     | extracted standard info from prmon json
[2026-03-04 19:48:49] 2026-03-05 03:48:14,098 | INFO     | extracted standard memory fields from prmon json
[2026-03-04 19:48:49] 2026-03-05 03:48:14,099 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-04 19:48:49] 2026-03-05 03:48:14,099 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-04 19:48:49] 2026-03-05 03:48:14,099 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-04 19:48:49] 2026-03-05 03:48:14,099 | WARNING  | wrong length of table data, x=[1772682324.0], y=[1527.0] (must be same and length>=4)
[2026-03-04 19:48:49] 2026-03-05 03:48:14,099 | INFO     | could have reported an average CPU frequency of 2792 MHz (4 samples)
[2026-03-04 19:48:49] 2026-03-05 03:48:14,099 | INFO     | ..............................
[2026-03-04 19:48:49] 2026-03-05 03:48:14,099 | INFO     | . Timing measurements:
[2026-03-04 19:48:49] 2026-03-05 03:48:14,099 | INFO     | . get job = 0 s
[2026-03-04 19:48:49] 2026-03-05 03:48:14,100 | INFO     | . initial setup = 22 s
[2026-03-04 19:48:49] 2026-03-05 03:48:14,100 | INFO     | . payload setup = 25 s
[2026-03-04 19:48:49] 2026-03-05 03:48:14,100 | INFO     | . stage-in = 0 s
[2026-03-04 19:48:49] 2026-03-05 03:48:14,100 | INFO     | . payload execution = 64 s
[2026-03-04 19:48:49] 2026-03-05 03:48:14,100 | INFO     | . stage-out = 0 s
[2026-03-04 19:48:49] 2026-03-05 03:48:14,100 | INFO     | . log creation = 0 s
[2026-03-04 19:48:49] 2026-03-05 03:48:14,100 | INFO     | ..............................
[2026-03-04 19:48:49] 2026-03-05 03:48:14,100 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-04 19:48:49] 2026-03-05 03:48:14,100 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7038528494/pilotlog.txt
[2026-03-04 19:48:49] 2026-03-05 03:48:14,200 | INFO     | time since job start (228s) is within the limit (349056.0s)
[2026-03-04 19:48:49] [end log extracts]
[2026-03-04 19:48:49] 2026-03-05 03:48:14,294 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2026-03-04 19:48:49] 2026-03-05 03:48:14,295 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-03-04 19:48:49] 2026-03-05 03:48:15,026 | INFO     | 
[2026-03-04 19:48:49] 2026-03-05 03:48:15,026 | INFO     | job summary report
[2026-03-04 19:48:49] 2026-03-05 03:48:15,026 | INFO     | --------------------------------------------------
[2026-03-04 19:48:49] 2026-03-05 03:48:15,026 | INFO     | PanDA job id: 7038528494
[2026-03-04 19:48:49] 2026-03-05 03:48:15,027 | INFO     | task id: 48955015
[2026-03-04 19:48:49] 2026-03-05 03:48:15,027 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-03-04 19:46:02,583 CRITICAL Transform executor raised TransformValidationExceptio
[2026-03-04 19:48:49] 2026-03-05 03:48:15,027 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-04 19:48:49] 2026-03-05 03:48:15,027 | INFO     | pilot state: failed 
[2026-03-04 19:48:49] 2026-03-05 03:48:15,027 | INFO     | transexitcode: 65
[2026-03-04 19:48:49] 2026-03-05 03:48:15,027 | INFO     | exeerrorcode: 65
[2026-03-04 19:48:49] 2026-03-05 03:48:15,027 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-03-04 19:48:49] 2026-03-05 03:48:15,027 | INFO     | exitcode: 65
[2026-03-04 19:48:49] 2026-03-05 03:48:15,027 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-03-04 19:48:49] 2026-03-05 03:48:15,027 | INFO     | cpuconsumptiontime: 14 s
[2026-03-04 19:48:49] 2026-03-05 03:48:15,027 | INFO     | nevents: 0
[2026-03-04 19:48:49] 2026-03-05 03:48:15,027 | INFO     | neventsw: 0
[2026-03-04 19:48:49] 2026-03-05 03:48:15,027 | INFO     | pid: 3213588
[2026-03-04 19:48:49] 2026-03-05 03:48:15,027 | INFO     | pgrp: 3213588
[2026-03-04 19:48:49] 2026-03-05 03:48:15,027 | INFO     | corecount: 12
[2026-03-04 19:48:49] 2026-03-05 03:48:15,027 | INFO     | event service: False
[2026-03-04 19:48:49] 2026-03-05 03:48:15,027 | INFO     | sizes: {0: 2295315, 1: 2295399, 2: 2295860, 13: 2295860, 93: 2319304, 95: 2323596, 98: 2323752, 216: 2323918}
[2026-03-04 19:48:49] 2026-03-05 03:48:15,027 | INFO     | --------------------------------------------------
[2026-03-04 19:48:49] 2026-03-05 03:48:15,027 | INFO     | 
[2026-03-04 19:48:49] 2026-03-05 03:48:15,027 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-03-04 19:48:49] 2026-03-05 03:48:15,218 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-04 19:48:49] 2026-03-05 03:48:15,219 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-04 19:48:49] 2026-03-05 03:48:15,219 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-04 19:48:49] 2026-03-05 03:48:15,219 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-04 19:48:49] 2026-03-05 03:48:15,219 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-04 19:48:49] 2026-03-05 03:48:15,219 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-04 19:48:49] 2026-03-05 03:48:15,219 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-04 19:48:49] 2026-03-05 03:48:15,219 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-04 19:48:49] 2026-03-05 03:48:15,219 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-04 19:48:49] 2026-03-05 03:48:15,219 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-04 19:48:49] 2026-03-05 03:48:15,219 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-04 19:48:49] 2026-03-05 03:48:15,219 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-04 19:48:49] 2026-03-05 03:48:15,219 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 19:48:49] 2026-03-05 03:48:15,219 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 19:48:49] 2026-03-05 03:48:15,219 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 19:48:49] 2026-03-05 03:48:15,220 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 19:48:49] 2026-03-05 03:48:15,220 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 19:48:49] 2026-03-05 03:48:15,220 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 19:48:49] 2026-03-05 03:48:15,220 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 19:48:49] 2026-03-05 03:48:15,220 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 19:48:49] 2026-03-05 03:48:15,220 | INFO     | job 7038528494 has completed (purged errors)
[2026-03-04 19:48:49] 2026-03-05 03:48:15,220 | INFO     | overall cleanup function is called
[2026-03-04 19:48:49] 2026-03-05 03:48:16,226 | INFO     | --- collectZombieJob: --- 10, [3213588]
[2026-03-04 19:48:49] 2026-03-05 03:48:16,226 | INFO     | zombie collector waiting for pid 3213588
[2026-03-04 19:48:49] 2026-03-05 03:48:16,226 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 19:48:49] 2026-03-05 03:48:16,226 | INFO     | collected zombie processes
[2026-03-04 19:48:49] 2026-03-05 03:48:16,226 | INFO     | will attempt to kill all subprocesses of pid=3213588
[2026-03-04 19:48:49] 2026-03-05 03:48:16,988 | INFO     | process IDs to be killed: [3213588] (in reverse order)
[2026-03-04 19:48:49] 2026-03-05 03:48:17,504 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 19:48:49] 2026-03-05 03:48:17,505 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 19:48:49] 2026-03-05 03:48:17,519 | INFO     | did not find any defunct processes belonging to 3213588
[2026-03-04 19:48:49] 2026-03-05 03:48:17,528 | INFO     | did not find any defunct processes belonging to 3213588
[2026-03-04 19:48:49] 2026-03-05 03:48:17,528 | INFO     | ready for new job
[2026-03-04 19:48:49] 2026-03-05 03:48:17,528 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 19:48:49] 2026-03-05 03:48:17,529 | INFO     | **************************************
[2026-03-04 19:48:49] 2026-03-05 03:48:17,530 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 19:48:49] 2026-03-05 03:48:17,530 | INFO     | **************************************
[2026-03-04 19:48:49] 2026-03-05 03:48:17,530 | INFO     | 
[2026-03-04 19:48:49] 2026-03-05 03:48:17,532 | INFO     | architecture information:
[2026-03-04 19:48:49] 2026-03-05 03:48:17,532 | INFO     | executing command: cat /etc/os-release
[2026-03-04 19:48:49] 2026-03-05 03:48:17,544 | INFO     | cat /etc/os-release:
[2026-03-04 19:48:49] NAME="CentOS Linux"
[2026-03-04 19:48:49] VERSION="7 (Core)"
[2026-03-04 19:48:49] ID="centos"
[2026-03-04 19:48:49] ID_LIKE="rhel fedora"
[2026-03-04 19:48:49] VERSION_ID="7"
[2026-03-04 19:48:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 19:48:49] ANSI_COLOR="0;31"
[2026-03-04 19:48:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 19:48:49] HOME_URL="https://www.centos.org/"
[2026-03-04 19:48:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 19:48:49] 
[2026-03-04 19:48:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 19:48:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 19:48:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 19:48:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 19:48:49] 
[2026-03-04 19:48:49] 2026-03-05 03:48:17,544 | INFO     | **************************************
[2026-03-04 19:48:49] 2026-03-05 03:48:18,065 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-03-04 19:48:49] 2026-03-05 03:48:18,101 | INFO     | sufficient remaining disk space (2141168074752 B)
[2026-03-04 19:48:49] 2026-03-05 03:48:18,102 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 19:48:49] 2026-03-05 03:48:18,102 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 19:48:49] 2026-03-05 03:48:18,102 | INFO     | update_server=False
[2026-03-04 19:48:49] 2026-03-05 03:48:18,102 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 19:48:49] 2026-03-05 03:48:18,103 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 19:48:49] 2026-03-05 03:48:18,536 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-04 19:48:49] 2026-03-05 03:48:18,536 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-04 19:48:49] 2026-03-05 03:48:18,536 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 19:48:49] 2026-03-05 03:48:18,536 | INFO     | will abort loop
[2026-03-04 19:48:49] 2026-03-05 03:48:18,602 | INFO     | all job control threads have been joined
[2026-03-04 19:48:49] 2026-03-05 03:48:18,986 | INFO     | all payload control threads have been joined
[2026-03-04 19:48:49] 2026-03-05 03:48:19,056 | INFO     | all data control threads have been joined
[2026-03-04 19:48:49] 2026-03-05 03:48:19,108 | INFO     | [job] retrieve thread has finished
[2026-03-04 19:48:49] 2026-03-05 03:48:19,132 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 19:48:49] 2026-03-05 03:48:19,164 | INFO     | [job] validate thread has finished
[2026-03-04 19:48:49] 2026-03-05 03:48:19,542 | INFO     | [job] job monitor thread has finished
[2026-03-04 19:48:49] 2026-03-05 03:48:19,578 | INFO     | [payload] validate_post thread has finished
[2026-03-04 19:48:49] 2026-03-05 03:48:19,608 | INFO     | [job] control thread has finished
[2026-03-04 19:48:49] 2026-03-05 03:48:19,823 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 19:48:49] 2026-03-05 03:48:19,992 | INFO     | [payload] control thread has finished
[2026-03-04 19:48:49] 2026-03-05 03:48:20,062 | INFO     | [data] control thread has finished
[2026-03-04 19:48:49] 2026-03-05 03:48:20,110 | INFO     | [data] copytool_out thread has finished
[2026-03-04 19:48:49] 2026-03-05 03:48:20,135 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 19:48:49] 2026-03-05 03:48:20,240 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 19:48:49] 2026-03-05 03:48:20,306 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 19:48:49] 2026-03-05 03:48:20,530 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 19:48:49] 2026-03-05 03:48:20,536 | INFO     | [data] copytool_in thread has finished
[2026-03-04 19:48:49] 2026-03-05 03:48:20,710 | INFO     | [payload] failed_post thread has finished
[2026-03-04 19:48:49] 2026-03-05 03:48:20,829 | INFO     | [job] queue monitor thread has finished
[2026-03-04 19:48:49] 2026-03-05 03:48:24,573 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 19:48:49] 2026-03-05 03:48:25,981 | INFO     | [monitor] cgroup control has ended
[2026-03-04 19:48:49] 2026-03-05 03:48:27,828 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139908998174528)>', '<ExcThread(monitor, started 139908609988352)>']
[2026-03-04 19:48:49] 2026-03-05 03:48:32,854 | INFO     | all workflow threads have been joined
[2026-03-04 19:48:49] 2026-03-05 03:48:32,854 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 19:48:49] 2026-03-05 03:48:32,854 | INFO     | traces error code: 0
[2026-03-04 19:48:49] 2026-03-05 03:48:32,855 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 19:48:49] 2026-03-05 03:48:47,770 | INFO     | PID=3207642 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-04 19:48:49] 2026-03-05 03:48:47,770 | INFO     | .. there are 48 such processes running
[2026-03-04 19:48:49] 2026-03-05 03:48:47,770 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 19:48:49] 2026-03-05 03:48:47,770 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 19:48:49] 2026-03-05 03:48:47,770 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 19:48:49] 2026-03-05 03:48:47,770 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 19:48:49] 2026-03-05 03:48:47,770 | INFO     | [monitor] control thread has ended
[2026-03-04 19:48:49] 2026-03-05 03:48:48,313 [wrapper] ==== pilot stdout END ====
[2026-03-04 19:48:49] 2026-03-05 03:48:48,330 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 19:48:49] 2026-03-05 03:48:48,353 [wrapper] pilotpid: 3207642
[2026-03-04 19:48:49] 2026-03-05 03:48:48,393 [wrapper] Pilot exit status: 0
[2026-03-04 19:48:49] 2026-03-05 03:48:48,547 [wrapper] pandaids: 7038528494
[2026-03-04 19:48:49] 2026-03-05 03:48:48,914 [wrapper] cleanup supervisor_pilot 3207648 3207643
[2026-03-04 19:48:49] 2026-03-05 03:48:48,925 [wrapper] Test setup, not cleaning
[2026-03-04 19:48:49] 2026-03-05 03:48:48,927 [wrapper] apfmon messages muted
[2026-03-04 19:48:49] 2026-03-05 03:48:48,936 [wrapper] ==== wrapper stdout END ====
[2026-03-04 19:48:49] 2026-03-05 03:48:48,958 [wrapper] ==== wrapper stderr END ====
[2026-03-04 19:48:49]  *** Error codes and diagnostics ***
[2026-03-04 19:48:49]     "exeErrorCode": 65,
[2026-03-04 19:48:49]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-03-04 19:48:49]     "pilotErrorCode": 1305,
[2026-03-04 19:48:49]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-03-04 19:48:49]  *** Listing of results directory ***
[2026-03-04 19:48:49] total 433688
[2026-03-04 19:48:49] -rw-r--r--. 1 boinc boinc    584627 Mar  4 14:50 pilot3.tar.gz
[2026-03-04 19:48:49] -rw-r--r--. 1 boinc boinc      5111 Mar  4 15:31 queuedata.json
[2026-03-04 19:48:49] -rwx------. 1 boinc boinc     36322 Mar  4 15:31 runpilot2-wrapper.sh
[2026-03-04 19:48:49] -rw-r--r--. 1 boinc boinc       100 Mar  4 19:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 19:48:49] -rwxr-xr-x. 1 boinc boinc      7986 Mar  4 19:43 run_atlas
[2026-03-04 19:48:49] -rw-r--r--. 1 boinc boinc       105 Mar  4 19:43 job.xml
[2026-03-04 19:48:49] -rw-r--r--. 1 boinc boinc      6593 Mar  4 19:43 init_data.xml
[2026-03-04 19:48:49] -rw-r--r--. 2 boinc boinc 439942890 Mar  4 19:43 EVNT.46701403._002097.pool.root.1
[2026-03-04 19:48:49] -rw-r--r--. 2 boinc boinc     15845 Mar  4 19:43 start_atlas.sh
[2026-03-04 19:48:49] drwxrwx--x. 2 boinc boinc      4096 Mar  4 19:43 shared
[2026-03-04 19:48:49] -rw-r--r--. 2 boinc boinc    597954 Mar  4 19:43 input.tar.gz
[2026-03-04 19:48:49] -rw-r--r--. 1 boinc boinc         0 Mar  4 19:43 boinc_lockfile
[2026-03-04 19:48:49] -rw-r--r--. 1 boinc boinc      2569 Mar  4 19:43 pandaJob.out
[2026-03-04 19:48:49] -rw-------. 1 boinc boinc    997757 Mar  4 19:44 agis_schedconf.cvmfs.json
[2026-03-04 19:48:49] -rw-------. 1 boinc boinc   1521291 Mar  4 19:44 agis_ddmendpoints.agis.ALL.json
[2026-03-04 19:48:49] -rw-------. 1 boinc boinc       444 Mar  4 19:44 workernode_map.json
[2026-03-04 19:48:49] drwx------. 5 boinc boinc      4096 Mar  4 19:44 pilot3
[2026-03-04 19:48:49] -rw-------. 1 boinc boinc       979 Mar  4 19:46 memory_monitor_summary.json
[2026-03-04 19:48:49] -rw-------. 1 boinc boinc     21638 Mar  4 19:46 log.48955015._002615.job.log.tgz.1
[2026-03-04 19:48:49] -rw-------. 1 boinc boinc        95 Mar  4 19:48 pilot_heartbeat.json
[2026-03-04 19:48:49] -rw-------. 1 boinc boinc      7041 Mar  4 19:48 heartbeat.json
[2026-03-04 19:48:49] -rw-r--r--. 1 boinc boinc       523 Mar  4 19:48 boinc_task_state.xml
[2026-03-04 19:48:49] -rw-r--r--. 1 boinc boinc      8192 Mar  4 19:48 boinc_mmap_file
[2026-03-04 19:48:49] -rw-r--r--. 1 boinc boinc        22 Mar  4 19:48 wrapper_checkpoint.txt
[2026-03-04 19:48:49] -rw-------. 1 boinc boinc       823 Mar  4 19:48 pilotlog.txt
[2026-03-04 19:48:49] -rw-------. 1 boinc boinc     89617 Mar  4 19:48 log.48955015._002615.job.log.1
[2026-03-04 19:48:49] -rw-------. 1 boinc boinc       188 Mar  4 19:48 output.list
[2026-03-04 19:48:49] -rw-r--r--. 1 boinc boinc       620 Mar  4 19:48 runtime_log
[2026-03-04 19:48:49] -rw-------. 1 boinc boinc    133120 Mar  4 19:48 result.tar.gz
[2026-03-04 19:48:49] -rw-r--r--. 1 boinc boinc      8635 Mar  4 19:48 runtime_log.err
[2026-03-04 19:48:49] -rw-------. 1 boinc boinc       643 Mar  4 19:48 PuhKDmzrAI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmLGMLDmqDxkpn.diag
[2026-03-04 19:48:49] -rw-r--r--. 1 boinc boinc     21762 Mar  4 19:48 stderr.txt
[2026-03-04 19:48:49] No HITS result produced
[2026-03-04 19:48:49]  *** Contents of shared directory: ***
[2026-03-04 19:48:49] total 430368
[2026-03-04 19:48:49] -rw-r--r--. 2 boinc boinc 439942890 Mar  4 19:43 ATLAS.root_0
[2026-03-04 19:48:49] -rw-r--r--. 2 boinc boinc     15845 Mar  4 19:43 start_atlas.sh
[2026-03-04 19:48:49] -rw-r--r--. 2 boinc boinc    597954 Mar  4 19:43 input.tar.gz
[2026-03-04 19:48:49] -rw-------. 1 boinc boinc    133120 Mar  4 19:48 result.tar.gz
19:48:50 (3203823): run_atlas exited; CPU time 22.889580
19:48:50 (3203823): called boinc_finish(0)

</stderr_txt>
]]>

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