Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:05:11 (2008305): wrapper (7.7.26015): starting
14:05:11 (2008305): wrapper: running run_atlas (--nthreads 4)
[2026-03-05 14:05:11] Arguments: --nthreads 4
[2026-03-05 14:05:11] Threads: 4
[2026-03-05 14:05:11] Checking for CVMFS
[2026-03-05 14:05:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-05 14:05:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-05 14:05:12] Running cvmfs_config stat atlas.cern.ch
[2026-03-05 14:05:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-05 14:05:12] 2.9.2.0 150552 11250 99256 156920 0 50 32007062 36864001 0 130560 0 4734458 99.983 422105 12101 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-05 14:05:12] CVMFS is ok
[2026-03-05 14:05:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-05 14:05:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-05 14:05:12] Further information can be found at the LHC@home message board.
[2026-03-05 14:05:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 14:05:12] Checking for apptainer binary...
[2026-03-05 14:05:12] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-05 14:05:12] Running /usr/bin/apptainer --version
[2026-03-05 14:05:12] apptainer version 1.4.1-1.1
[2026-03-05 14:05:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 14:05:12] thA317
[2026-03-05 14:05:12] apptainer works
[2026-03-05 14:05:12] Set ATHENA_PROC_NUMBER=4
[2026-03-05 14:05:12] Set ATHENA_CORE_NUMBER=4
[2026-03-05 14:05:12] Starting ATLAS job with PandaID=7038528550
[2026-03-05 14:05:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 15:12:44]  *** The last 200 lines of the pilot log: ***
[2026-03-05 15:12:44] 2026-03-05 14:12:12,376 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-05 15:12:44] 2026-03-05 14:12:12,376 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-05 15:12:44] 2026-03-05 14:12:12,376 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-05 15:12:44] 2026-03-05 14:12:12,376 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-05 15:12:44] 2026-03-05 14:12:12,376 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-05 15:12:44] 2026-03-05 14:12:12,376 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-05 15:12:44] 2026-03-05 14:12:12,376 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-05 15:12:44] 2026-03-05 14:12:12,376 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-05 15:12:44] 2026-03-05 14:12:12,376 | INFO     | job 7038528550 has completed (purged errors)
[2026-03-05 15:12:44] 2026-03-05 14:12:12,376 | INFO     | overall cleanup function is called
[2026-03-05 15:12:44] 2026-03-05 14:12:13,383 | INFO     | --- collectZombieJob: --- 10, [2016926]
[2026-03-05 15:12:44] 2026-03-05 14:12:13,383 | INFO     | zombie collector waiting for pid 2016926
[2026-03-05 15:12:44] 2026-03-05 14:12:13,383 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 15:12:44] 2026-03-05 14:12:13,383 | INFO     | collected zombie processes
[2026-03-05 15:12:44] 2026-03-05 14:12:13,383 | INFO     | will attempt to kill all subprocesses of pid=2016926
[2026-03-05 15:12:44] 2026-03-05 14:12:13,438 | INFO     | process IDs to be killed: [2016926] (in reverse order)
[2026-03-05 15:12:44] 2026-03-05 14:12:13,476 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 15:12:44] 2026-03-05 14:12:13,477 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 15:12:44] 2026-03-05 14:12:13,479 | INFO     | did not find any defunct processes belonging to 2016926
[2026-03-05 15:12:44] 2026-03-05 14:12:13,481 | INFO     | did not find any defunct processes belonging to 2016926
[2026-03-05 15:12:44] 2026-03-05 14:12:13,481 | INFO     | ready for new job
[2026-03-05 15:12:44] 2026-03-05 14:12:13,481 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 15:12:44] 2026-03-05 14:12:13,481 | INFO     | **************************************
[2026-03-05 15:12:44] 2026-03-05 14:12:13,481 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 15:12:44] 2026-03-05 14:12:13,481 | INFO     | **************************************
[2026-03-05 15:12:44] 2026-03-05 14:12:13,482 | INFO     | 
[2026-03-05 15:12:44] 2026-03-05 14:12:13,482 | INFO     | architecture information:
[2026-03-05 15:12:44] 2026-03-05 14:12:13,482 | INFO     | executing command: cat /etc/os-release
[2026-03-05 15:12:44] 2026-03-05 14:12:13,496 | INFO     | cat /etc/os-release:
[2026-03-05 15:12:44] NAME="CentOS Linux"
[2026-03-05 15:12:44] VERSION="7 (Core)"
[2026-03-05 15:12:44] ID="centos"
[2026-03-05 15:12:44] ID_LIKE="rhel fedora"
[2026-03-05 15:12:44] VERSION_ID="7"
[2026-03-05 15:12:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 15:12:44] ANSI_COLOR="0;31"
[2026-03-05 15:12:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 15:12:44] HOME_URL="https://www.centos.org/"
[2026-03-05 15:12:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 15:12:44] 
[2026-03-05 15:12:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 15:12:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 15:12:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 15:12:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 15:12:44] 
[2026-03-05 15:12:44] 2026-03-05 14:12:13,497 | INFO     | **************************************
[2026-03-05 15:12:44] 2026-03-05 14:12:14,000 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-05 15:12:44] 2026-03-05 14:12:14,016 | INFO     | sufficient remaining disk space (225433354240 B)
[2026-03-05 15:12:44] 2026-03-05 14:12:14,016 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 15:12:44] 2026-03-05 14:12:14,016 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 15:12:44] 2026-03-05 14:12:14,017 | INFO     | update_server=False
[2026-03-05 15:12:44] 2026-03-05 14:12:14,017 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 15:12:44] 2026-03-05 14:12:14,017 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 15:12:44] 2026-03-05 14:12:14,017 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 15:12:44] 2026-03-05 14:12:14,056 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 15:12:44] 2026-03-05 14:12:14,056 | INFO     | aborting loop
[2026-03-05 15:12:44] 2026-03-05 14:12:14,249 | INFO     | all job control threads have been joined
[2026-03-05 15:12:44] 2026-03-05 14:12:14,516 | INFO     | all payload control threads have been joined
[2026-03-05 15:12:44] 2026-03-05 14:12:14,758 | INFO     | all data control threads have been joined
[2026-03-05 15:12:44] 2026-03-05 14:12:15,020 | INFO     | [job] retrieve thread has finished
[2026-03-05 15:12:44] 2026-03-05 14:12:15,022 | INFO     | [job] queue monitor thread has finished
[2026-03-05 15:12:44] 2026-03-05 14:12:15,038 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 15:12:44] 2026-03-05 14:12:15,062 | INFO     | [job] job monitor thread has finished
[2026-03-05 15:12:44] 2026-03-05 14:12:15,173 | INFO     | [data] copytool_in thread has finished
[2026-03-05 15:12:44] 2026-03-05 14:12:15,255 | INFO     | [job] control thread has finished
[2026-03-05 15:12:44] 2026-03-05 14:12:15,521 | INFO     | [payload] control thread has finished
[2026-03-05 15:12:44] 2026-03-05 14:12:15,647 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 15:12:44] 2026-03-05 14:12:15,764 | INFO     | [data] control thread has finished
[2026-03-05 15:12:44] 2026-03-05 14:12:15,994 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 15:12:44] 2026-03-05 14:12:16,023 | INFO     | [data] copytool_out thread has finished
[2026-03-05 15:12:44] 2026-03-05 14:12:16,183 | INFO     | [payload] validate_post thread has finished
[2026-03-05 15:12:44] 2026-03-05 14:12:16,349 | INFO     | [job] validate thread has finished
[2026-03-05 15:12:44] 2026-03-05 14:12:16,365 | INFO     | [payload] failed_post thread has finished
[2026-03-05 15:12:44] 2026-03-05 14:12:16,475 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 15:12:44] 2026-03-05 14:12:20,000 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 15:12:44] 2026-03-05 14:12:24,172 | INFO     | job.realtimelogging is not enabled
[2026-03-05 15:12:44] 2026-03-05 14:12:25,178 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 15:12:44] 2026-03-05 14:12:29,257 | INFO     | [monitor] cgroup control has ended
[2026-03-05 15:12:44] 2026-03-05 14:12:30,386 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139843641538368)>', '<ExcThread(monitor, started 139842776192768)>']
[2026-03-05 15:12:44] 2026-03-05 14:12:35,411 | INFO     | all workflow threads have been joined
[2026-03-05 15:12:44] 2026-03-05 14:12:35,412 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 15:12:44] 2026-03-05 14:12:35,412 | INFO     | traces error code: 0
[2026-03-05 15:12:44] 2026-03-05 14:12:35,412 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 15:12:44] 2026-03-05 14:12:44,693 | INFO     | PID=2012422 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-05 15:12:44] 2026-03-05 14:12:44,693 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 15:12:44] 2026-03-05 14:12:44,693 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 15:12:44] 2026-03-05 14:12:44,693 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 15:12:44] 2026-03-05 14:12:44,693 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 15:12:44] 2026-03-05 14:12:44,693 | CRITICAL | thread 'MainThread' is not alive
[2026-03-05 15:12:44] 2026-03-05 14:12:44,693 | INFO     | [monitor] control thread has ended
[2026-03-05 15:12:44] 2026-03-05 14:12:44,769 [wrapper] ==== pilot stdout END ====
[2026-03-05 15:12:44] 2026-03-05 14:12:44,773 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 15:12:44] 2026-03-05 14:12:44,777 [wrapper] pilotpid: 2012422
[2026-03-05 15:12:44] 2026-03-05 14:12:44,781 [wrapper] Pilot exit status: 0
[2026-03-05 15:12:44] 2026-03-05 14:12:44,793 [wrapper] pandaids: 7038528550
[2026-03-05 15:12:44] 2026-03-05 14:12:44,818 [wrapper] cleanup supervisor_pilot 2024052 2012423
[2026-03-05 15:12:44] 2026-03-05 14:12:44,822 [wrapper] Test setup, not cleaning
[2026-03-05 15:12:44] 2026-03-05 14:12:44,827 [wrapper] apfmon messages muted
[2026-03-05 15:12:44] 2026-03-05 14:12:44,831 [wrapper] ==== wrapper stdout END ====
[2026-03-05 15:12:44] 2026-03-05 14:12:44,835 [wrapper] ==== wrapper stderr END ====
[2026-03-05 15:12:44]  *** Error codes and diagnostics ***
[2026-03-05 15:12:44]     "exeErrorCode": 0,
[2026-03-05 15:12:44]     "exeErrorDiag": "",
[2026-03-05 15:12:44]     "pilotErrorCode": 0,
[2026-03-05 15:12:44]     "pilotErrorDiag": "",
[2026-03-05 15:12:44]  *** Listing of results directory ***
[2026-03-05 15:12:44] total 607716
[2026-03-05 15:12:44] -rw-r--r-- 1 boinc boinc    584627 Mar  4 23:50 pilot3.tar.gz
[2026-03-05 15:12:44] -rw-r--r-- 1 boinc boinc      5111 Mar  5 00:31 queuedata.json
[2026-03-05 15:12:44] -rwx------ 1 boinc boinc     36322 Mar  5 00:31 runpilot2-wrapper.sh
[2026-03-05 15:12:44] -rw-r--r-- 1 boinc boinc       100 Mar  5 14:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 15:12:44] -rwxr-xr-x 1 boinc boinc      7986 Mar  5 14:05 run_atlas
[2026-03-05 15:12:44] -rw-r--r-- 1 boinc boinc       105 Mar  5 14:05 job.xml
[2026-03-05 15:12:44] -rw-r--r-- 2 boinc boinc 434759518 Mar  5 14:05 EVNT.46701403._002098.pool.root.1
[2026-03-05 15:12:44] -rw-r--r-- 2 boinc boinc    597961 Mar  5 14:05 input.tar.gz
[2026-03-05 15:12:44] -rw-r--r-- 2 boinc boinc     15845 Mar  5 14:05 start_atlas.sh
[2026-03-05 15:12:44] drwxrwx--x 2 boinc boinc      4096 Mar  5 14:05 shared
[2026-03-05 15:12:44] -rw-r--r-- 1 boinc boinc         0 Mar  5 14:05 boinc_setup_complete
[2026-03-05 15:12:44] -rw-r--r-- 1 boinc boinc      6376 Mar  5 14:05 init_data.xml
[2026-03-05 15:12:44] -rw-r--r-- 1 boinc boinc         0 Mar  5 14:05 boinc_lockfile
[2026-03-05 15:12:44] -rw-r--r-- 1 boinc boinc      2569 Mar  5 14:05 pandaJob.out
[2026-03-05 15:12:44] -rw------- 1 boinc boinc    998459 Mar  5 14:05 agis_schedconf.cvmfs.json
[2026-03-05 15:12:44] -rw------- 1 boinc boinc   1521291 Mar  5 14:05 agis_ddmendpoints.agis.ALL.json
[2026-03-05 15:12:44] -rw------- 1 boinc boinc       427 Mar  5 14:05 workernode_map.json
[2026-03-05 15:12:44] drwx------ 5 boinc boinc      4096 Mar  5 14:05 pilot3
[2026-03-05 15:12:44] -rw------- 1 boinc boinc 181896843 Mar  5 15:11 HITS.48955015._002671.pool.root.1
[2026-03-05 15:12:44] -rw------- 1 boinc boinc        95 Mar  5 15:11 pilot_heartbeat.json
[2026-03-05 15:12:44] -rw-r--r-- 1 boinc boinc       530 Mar  5 15:11 boinc_task_state.xml
[2026-03-05 15:12:44] -rw------- 1 boinc boinc      1031 Mar  5 15:12 memory_monitor_summary.json
[2026-03-05 15:12:44] -rw------- 1 boinc boinc    266032 Mar  5 15:12 log.48955015._002671.job.log.tgz.1
[2026-03-05 15:12:44] -rw------- 1 boinc boinc      6319 Mar  5 15:12 heartbeat.json
[2026-03-05 15:12:44] -rw-r--r-- 1 boinc boinc      8192 Mar  5 15:12 boinc_mmap_file
[2026-03-05 15:12:44] -rw-r--r-- 1 boinc boinc        27 Mar  5 15:12 wrapper_checkpoint.txt
[2026-03-05 15:12:44] -rw------- 1 boinc boinc       817 Mar  5 15:12 pilotlog.txt
[2026-03-05 15:12:44] -rw------- 1 boinc boinc    597071 Mar  5 15:12 log.48955015._002671.job.log.1
[2026-03-05 15:12:44] -rw------- 1 boinc boinc       357 Mar  5 15:12 output.list
[2026-03-05 15:12:44] -rw-r--r-- 1 boinc boinc       620 Mar  5 15:12 runtime_log
[2026-03-05 15:12:44] -rw------- 1 boinc boinc    880640 Mar  5 15:12 result.tar.gz
[2026-03-05 15:12:44] -rw-r--r-- 1 boinc boinc      8896 Mar  5 15:12 runtime_log.err
[2026-03-05 15:12:44] -rw------- 1 boinc boinc       657 Mar  5 15:12 24VKDm0rAI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmrBKLDm8KaJwm.diag
[2026-03-05 15:12:44] -rw-r--r-- 1 boinc boinc     11803 Mar  5 15:12 stderr.txt
[2026-03-05 15:12:44] HITS file was successfully produced:
[2026-03-05 15:12:44] -rw------- 1 boinc boinc 181896843 Mar  5 15:11 shared/HITS.pool.root.1
[2026-03-05 15:12:44]  *** Contents of shared directory: ***
[2026-03-05 15:12:44] total 603676
[2026-03-05 15:12:44] -rw-r--r-- 2 boinc boinc 434759518 Mar  5 14:05 ATLAS.root_0
[2026-03-05 15:12:44] -rw-r--r-- 2 boinc boinc    597961 Mar  5 14:05 input.tar.gz
[2026-03-05 15:12:44] -rw-r--r-- 2 boinc boinc     15845 Mar  5 14:05 start_atlas.sh
[2026-03-05 15:12:44] -rw------- 1 boinc boinc 181896843 Mar  5 15:11 HITS.pool.root.1
[2026-03-05 15:12:44] -rw------- 1 boinc boinc    880640 Mar  5 15:12 result.tar.gz
15:12:46 (2008305): run_atlas exited; CPU time 14976.631192
15:12:46 (2008305): called boinc_finish(0)

</stderr_txt>
]]>

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