Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:52:06 (272699): wrapper (7.7.26015): starting
01:52:06 (272699): wrapper: running run_atlas (--nthreads 8)
[2026-03-05 01:52:06] Arguments: --nthreads 8
[2026-03-05 01:52:06] Threads: 8
[2026-03-05 01:52:06] Checking for CVMFS
[2026-03-05 01:52:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-05 01:52:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-05 01:52:06] Running cvmfs_config stat atlas.cern.ch
[2026-03-05 01:52:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-05 01:52:06] 2.13.3.0 8175 288 48316 156898 0 187 3228356 4096000 6723 130560 0 756398 99.992 13924 1692 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.178:3128 1
[2026-03-05 01:52:06] CVMFS is ok
[2026-03-05 01:52:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 01:52:06] Checking for apptainer binary...
[2026-03-05 01:52:06] apptainer is not installed, using version from CVMFS
[2026-03-05 01:52:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 01:52:07] senture-z10pe-l
[2026-03-05 01:52:07] apptainer works
[2026-03-05 01:52:07] Set ATHENA_PROC_NUMBER=8
[2026-03-05 01:52:07] Set ATHENA_CORE_NUMBER=8
[2026-03-05 01:52:07] Starting ATLAS job with PandaID=7040463498
[2026-03-05 01:52:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 04:38:48]  *** The last 200 lines of the pilot log: ***
[2026-03-05 04:38:48] 2026-03-05 04:37:43,684 | INFO     | fitting pss+swap vs Time
[2026-03-05 04:38:48] 2026-03-05 04:37:43,685 | INFO     | sum of square deviations: 1342841922.0
[2026-03-05 04:38:48] 2026-03-05 04:37:43,686 | INFO     | sum of deviations: 13192422298.0
[2026-03-05 04:38:48] 2026-03-05 04:37:43,686 | INFO     | mean x: 1772680512.0
[2026-03-05 04:38:48] 2026-03-05 04:37:43,686 | INFO     | mean y: 2485126.8588957055
[2026-03-05 04:38:48] 2026-03-05 04:37:43,686 | INFO     | intersect: -17412781354.327755
[2026-03-05 04:38:48] 2026-03-05 04:37:43,687 | INFO     | chi2: 2.3202077189224144
[2026-03-05 04:38:48] 2026-03-05 04:37:43,687 | INFO     | sum of square deviations: 1223016419.5
[2026-03-05 04:38:48] 2026-03-05 04:37:43,688 | INFO     | sum of deviations: 22834277040.5
[2026-03-05 04:38:48] 2026-03-05 04:37:43,689 | INFO     | mean x: 1772680359.5
[2026-03-05 04:38:48] 2026-03-05 04:37:43,689 | INFO     | mean y: 2497073.841772152
[2026-03-05 04:38:48] 2026-03-05 04:37:43,689 | INFO     | intersect: -33094257628.457737
[2026-03-05 04:38:48] 2026-03-05 04:37:43,689 | INFO     | chi2: 1.6379686864218368
[2026-03-05 04:38:48] 2026-03-05 04:37:43,689 | INFO     | current chi2=1.6379686864218368 (change=29.4042221709974 %)
[2026-03-05 04:38:48] 2026-03-05 04:37:43,690 | INFO     | sum of square deviations: 1110539892.0
[2026-03-05 04:38:48] 2026-03-05 04:37:43,691 | INFO     | sum of deviations: 22052609773.0
[2026-03-05 04:38:48] 2026-03-05 04:37:43,691 | INFO     | mean x: 1772680207.0
[2026-03-05 04:38:48] 2026-03-05 04:37:43,691 | INFO     | mean y: 2496014.1307189544
[2026-03-05 04:38:48] 2026-03-05 04:37:43,691 | INFO     | intersect: -35198603143.946045
[2026-03-05 04:38:48] 2026-03-05 04:37:43,692 | INFO     | chi2: 1.639704205568445
[2026-03-05 04:38:48] 2026-03-05 04:37:43,692 | INFO     | current chi2=1.639704205568445 (change=-0.10595557540232665 %)
[2026-03-05 04:38:48] 2026-03-05 04:37:43,692 | INFO     | right removable region: 152
[2026-03-05 04:38:48] 2026-03-05 04:37:43,693 | INFO     | sum of square deviations: 1223016419.5
[2026-03-05 04:38:48] 2026-03-05 04:37:43,694 | INFO     | sum of deviations: -13951351541.0
[2026-03-05 04:38:48] 2026-03-05 04:37:43,694 | INFO     | mean x: 1772680664.5
[2026-03-05 04:38:48] 2026-03-05 04:37:43,694 | INFO     | mean y: 2519270.379746835
[2026-03-05 04:38:48] 2026-03-05 04:37:43,694 | INFO     | intersect: 20224072085.250175
[2026-03-05 04:38:48] 2026-03-05 04:37:43,695 | INFO     | chi2: 0.7864806376698679
[2026-03-05 04:38:48] 2026-03-05 04:37:43,695 | INFO     | current chi2=0.7864806376698679 (change=66.10300744818068 %)
[2026-03-05 04:38:48] 2026-03-05 04:37:43,695 | INFO     | sum of square deviations: 1110539892.0
[2026-03-05 04:38:48] 2026-03-05 04:37:43,696 | INFO     | sum of deviations: -17235890807.0
[2026-03-05 04:38:48] 2026-03-05 04:37:43,696 | INFO     | mean x: 1772680817.0
[2026-03-05 04:38:48] 2026-03-05 04:37:43,697 | INFO     | mean y: 2523676.640522876
[2026-03-05 04:38:48] 2026-03-05 04:37:43,697 | INFO     | intersect: 27515027475.53652
[2026-03-05 04:38:48] 2026-03-05 04:37:43,697 | INFO     | chi2: 0.7525172373284189
[2026-03-05 04:38:48] 2026-03-05 04:37:43,697 | INFO     | current chi2=0.7525172373284189 (change=4.318402604554061 %)
[2026-03-05 04:38:48] 2026-03-05 04:37:43,698 | INFO     | left removable region: 20
[2026-03-05 04:38:48] 2026-03-05 04:37:43,698 | INFO     | sum of square deviations: 713140813.0
[2026-03-05 04:38:48] 2026-03-05 04:37:43,699 | INFO     | sum of deviations: -1125848024.9999993
[2026-03-05 04:38:48] 2026-03-05 04:37:43,699 | INFO     | mean x: 1772680786.5
[2026-03-05 04:38:48] 2026-03-05 04:37:43,699 | INFO     | mean y: 2527702.242424242
[2026-03-05 04:38:48] 2026-03-05 04:37:43,699 | INFO     | intersect: 2801090238.6379824
[2026-03-05 04:38:48] 2026-03-05 04:37:43,700 | INFO     | chi2: 0.023307513363931522
[2026-03-05 04:38:48] 2026-03-05 04:37:43,700 | INFO     | current memory leak: -1.58 B/s (using 132 data points, chi2=0.02)
[2026-03-05 04:38:48] 2026-03-05 04:37:43,700 | INFO     | could have reported an average CPU frequency of 2294 MHz (9 samples)
[2026-03-05 04:38:48] 2026-03-05 04:37:43,701 | INFO     | ..............................
[2026-03-05 04:38:48] 2026-03-05 04:37:43,701 | INFO     | . Timing measurements:
[2026-03-05 04:38:48] 2026-03-05 04:37:43,701 | INFO     | . get job = 0 s
[2026-03-05 04:38:48] 2026-03-05 04:37:43,701 | INFO     | . initial setup = 7 s
[2026-03-05 04:38:48] 2026-03-05 04:37:43,701 | INFO     | . payload setup = 7 s
[2026-03-05 04:38:48] 2026-03-05 04:37:43,701 | INFO     | . stage-in = 0 s
[2026-03-05 04:38:48] 2026-03-05 04:37:43,701 | INFO     | . payload execution = 9889 s
[2026-03-05 04:38:48] 2026-03-05 04:37:43,702 | INFO     | . stage-out = 1 s
[2026-03-05 04:38:48] 2026-03-05 04:37:43,702 | INFO     | . log creation = 0 s
[2026-03-05 04:38:48] 2026-03-05 04:37:43,702 | INFO     | ..............................
[2026-03-05 04:38:48] 2026-03-05 04:37:43,715 | INFO     | time since job start (9917s) is within the limit (349056.0s)
[2026-03-05 04:38:48] 2026-03-05 04:37:43,854 | INFO     | 
[2026-03-05 04:38:48] 2026-03-05 04:37:43,854 | INFO     | job summary report
[2026-03-05 04:38:48] 2026-03-05 04:37:43,854 | INFO     | --------------------------------------------------
[2026-03-05 04:38:48] 2026-03-05 04:37:43,854 | INFO     | PanDA job id: 7040463498
[2026-03-05 04:38:48] 2026-03-05 04:37:43,855 | INFO     | task id: 48958627
[2026-03-05 04:38:48] 2026-03-05 04:37:43,855 | INFO     | errors: (none)
[2026-03-05 04:38:48] 2026-03-05 04:37:43,855 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-05 04:38:48] 2026-03-05 04:37:43,855 | INFO     | pilot state: finished 
[2026-03-05 04:38:48] 2026-03-05 04:37:43,855 | INFO     | transexitcode: 0
[2026-03-05 04:38:48] 2026-03-05 04:37:43,855 | INFO     | exeerrorcode: 0
[2026-03-05 04:38:48] 2026-03-05 04:37:43,855 | INFO     | exeerrordiag: 
[2026-03-05 04:38:48] 2026-03-05 04:37:43,856 | INFO     | exitcode: 0
[2026-03-05 04:38:48] 2026-03-05 04:37:43,856 | INFO     | exitmsg: OK
[2026-03-05 04:38:48] 2026-03-05 04:37:43,856 | INFO     | cpuconsumptiontime: 73251 s
[2026-03-05 04:38:48] 2026-03-05 04:37:43,856 | INFO     | nevents: 400
[2026-03-05 04:38:48] 2026-03-05 04:37:43,856 | INFO     | neventsw: 0
[2026-03-05 04:38:48] 2026-03-05 04:37:43,856 | INFO     | pid: 281462
[2026-03-05 04:38:48] 2026-03-05 04:37:43,856 | INFO     | pgrp: 281462
[2026-03-05 04:38:48] 2026-03-05 04:37:43,856 | INFO     | corecount: 8
[2026-03-05 04:38:48] 2026-03-05 04:37:43,857 | INFO     | event service: False
[2026-03-05 04:38:48] 2026-03-05 04:37:43,857 | INFO     | sizes: {0: 2295313, 1: 2295774, 12: 2295774, 9900: 2324424, 9901: 2333436, 9903: 2333492, 9906: 2333878}
[2026-03-05 04:38:48] 2026-03-05 04:37:43,857 | INFO     | --------------------------------------------------
[2026-03-05 04:38:48] 2026-03-05 04:37:43,857 | INFO     | 
[2026-03-05 04:38:48] 2026-03-05 04:37:43,857 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/8
[2026-03-05 04:38:48] 2026-03-05 04:37:43,895 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-05 04:38:48] 2026-03-05 04:37:43,895 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-05 04:38:48] 2026-03-05 04:37:43,895 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-05 04:38:48] 2026-03-05 04:37:43,895 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-05 04:38:49] 2026-03-05 04:37:43,896 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-05 04:38:49] 2026-03-05 04:37:43,896 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-05 04:38:49] 2026-03-05 04:37:43,896 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-05 04:38:49] 2026-03-05 04:37:43,896 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-05 04:38:49] 2026-03-05 04:37:43,896 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-05 04:38:49] 2026-03-05 04:37:43,896 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-05 04:38:49] 2026-03-05 04:37:43,897 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-05 04:38:49] 2026-03-05 04:37:43,897 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-05 04:38:49] 2026-03-05 04:37:43,897 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-05 04:38:49] 2026-03-05 04:37:43,897 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-05 04:38:49] 2026-03-05 04:37:43,897 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-05 04:38:49] 2026-03-05 04:37:43,897 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-05 04:38:49] 2026-03-05 04:37:43,898 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-05 04:38:49] 2026-03-05 04:37:43,898 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-05 04:38:49] 2026-03-05 04:37:43,898 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-05 04:38:49] 2026-03-05 04:37:43,898 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-05 04:38:49] 2026-03-05 04:37:43,898 | INFO     | job 7040463498 has completed (purged errors)
[2026-03-05 04:38:49] 2026-03-05 04:37:43,898 | INFO     | overall cleanup function is called
[2026-03-05 04:38:49] 2026-03-05 04:37:44,907 | INFO     | --- collectZombieJob: --- 10, [281462]
[2026-03-05 04:38:49] 2026-03-05 04:37:44,908 | INFO     | zombie collector waiting for pid 281462
[2026-03-05 04:38:49] 2026-03-05 04:37:44,909 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 04:38:49] 2026-03-05 04:37:44,909 | INFO     | collected zombie processes
[2026-03-05 04:38:49] 2026-03-05 04:37:44,909 | INFO     | will attempt to kill all subprocesses of pid=281462
[2026-03-05 04:38:49] 2026-03-05 04:37:46,652 | INFO     | PID=276723 has CPU usage=20.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-05 04:38:49] 2026-03-05 04:37:46,652 | INFO     | .. there are 8 such processes running
[2026-03-05 04:38:49] 2026-03-05 04:37:46,858 | WARNING  | process 281462 can no longer be monitored (due to stat problems) - aborting
[2026-03-05 04:38:49] 2026-03-05 04:37:46,958 | INFO     | process IDs to be killed: [281462] (in reverse order)
[2026-03-05 04:38:49] 2026-03-05 04:37:47,092 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 04:38:49] 2026-03-05 04:37:47,092 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 04:38:49] 2026-03-05 04:37:47,135 | INFO     | did not find any defunct processes belonging to 281462
[2026-03-05 04:38:49] 2026-03-05 04:37:47,176 | INFO     | did not find any defunct processes belonging to 281462
[2026-03-05 04:38:49] 2026-03-05 04:37:47,177 | INFO     | ready for new job
[2026-03-05 04:38:49] 2026-03-05 04:37:47,177 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 04:38:49] 2026-03-05 04:37:47,180 | INFO     | **************************************
[2026-03-05 04:38:49] 2026-03-05 04:37:47,180 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 04:38:49] 2026-03-05 04:37:47,180 | INFO     | **************************************
[2026-03-05 04:38:49] 2026-03-05 04:37:47,180 | INFO     | 
[2026-03-05 04:38:49] 2026-03-05 04:37:47,187 | INFO     | pilot is running in a VM
[2026-03-05 04:38:49] 2026-03-05 04:37:47,187 | INFO     | architecture information:
[2026-03-05 04:38:49] 2026-03-05 04:37:47,188 | INFO     | executing command: cat /etc/os-release
[2026-03-05 04:38:49] 2026-03-05 04:37:47,206 | INFO     | cat /etc/os-release:
[2026-03-05 04:38:49] NAME="CentOS Linux"
[2026-03-05 04:38:49] VERSION="7 (Core)"
[2026-03-05 04:38:49] ID="centos"
[2026-03-05 04:38:49] ID_LIKE="rhel fedora"
[2026-03-05 04:38:49] VERSION_ID="7"
[2026-03-05 04:38:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 04:38:49] ANSI_COLOR="0;31"
[2026-03-05 04:38:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 04:38:49] HOME_URL="https://www.centos.org/"
[2026-03-05 04:38:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 04:38:49] 
[2026-03-05 04:38:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 04:38:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 04:38:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 04:38:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 04:38:49] 
[2026-03-05 04:38:49] 2026-03-05 04:37:47,207 | INFO     | **************************************
[2026-03-05 04:38:49] 2026-03-05 04:37:47,348 | INFO     | using path: /var/lib/boinc-client/slots/8/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 04:38:49] 2026-03-05 04:37:47,710 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/8
[2026-03-05 04:38:49] 2026-03-05 04:37:47,731 | INFO     | sufficient remaining disk space (107976065024 B)
[2026-03-05 04:38:49] 2026-03-05 04:37:47,731 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 04:38:49] 2026-03-05 04:37:47,732 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 04:38:49] 2026-03-05 04:37:47,732 | INFO     | update_server=False
[2026-03-05 04:38:49] 2026-03-05 04:37:47,732 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 04:38:49] 2026-03-05 04:37:47,732 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 04:38:49] 2026-03-05 04:37:47,733 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 04:38:49] 2026-03-05 04:37:47,774 | INFO     | number of running child processes to parent process 281462: 1
[2026-03-05 04:38:49] 2026-03-05 04:37:47,775 | INFO     | maximum number of monitored processes: 6
[2026-03-05 04:38:49] 2026-03-05 04:37:47,775 | INFO     | aborting job monitoring since job object (job id=7040463498) has expired
[2026-03-05 04:38:49] 2026-03-05 04:37:47,775 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 04:38:49] 2026-03-05 04:37:47,775 | INFO     | will abort loop
[2026-03-05 04:38:49] 2026-03-05 04:37:47,802 | INFO     | all data control threads have been joined
[2026-03-05 04:38:49] 2026-03-05 04:37:47,998 | INFO     | all payload control threads have been joined
[2026-03-05 04:38:49] 2026-03-05 04:37:48,738 | INFO     | [job] retrieve thread has finished
[2026-03-05 04:38:49] 2026-03-05 04:37:48,781 | INFO     | [job] job monitor thread has finished
[2026-03-05 04:38:49] 2026-03-05 04:37:48,808 | INFO     | [data] control thread has finished
[2026-03-05 04:38:49] 2026-03-05 04:37:48,826 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 04:38:49] 2026-03-05 04:37:49,004 | INFO     | [payload] control thread has finished
[2026-03-05 04:38:49] 2026-03-05 04:37:49,187 | INFO     | [payload] validate_post thread has finished
[2026-03-05 04:38:49] 2026-03-05 04:37:49,394 | INFO     | all job control threads have been joined
[2026-03-05 04:38:49] 2026-03-05 04:37:49,433 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 04:38:49] 2026-03-05 04:37:49,446 | INFO     | [job] validate thread has finished
[2026-03-05 04:38:49] 2026-03-05 04:37:49,739 | INFO     | [data] copytool_out thread has finished
[2026-03-05 04:38:49] 2026-03-05 04:37:49,832 | INFO     | [job] queue monitor thread has finished
[2026-03-05 04:38:49] 2026-03-05 04:37:50,031 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 04:38:49] 2026-03-05 04:37:50,044 | INFO     | [payload] failed_post thread has finished
[2026-03-05 04:38:49] 2026-03-05 04:37:50,097 | INFO     | [data] copytool_in thread has finished
[2026-03-05 04:38:49] 2026-03-05 04:37:50,240 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 04:38:49] 2026-03-05 04:37:50,400 | INFO     | [job] control thread has finished
[2026-03-05 04:38:49] 2026-03-05 04:37:51,739 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 04:38:49] 2026-03-05 04:37:58,508 | INFO     | job.realtimelogging is not enabled
[2026-03-05 04:38:49] 2026-03-05 04:37:59,513 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 04:38:49] 2026-03-05 04:38:19,225 | INFO     | PID=276723 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-05 04:38:49] 2026-03-05 04:38:19,225 | INFO     | .. there are 7 such processes running
[2026-03-05 04:38:49] 2026-03-05 04:38:19,226 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 04:38:49] 2026-03-05 04:38:19,226 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 04:38:49] 2026-03-05 04:38:19,227 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 04:38:49] 2026-03-05 04:38:41,813 | INFO     | [monitor] cgroup control has ended
[2026-03-05 04:38:49] 2026-03-05 04:38:43,639 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140331773495104)>', '<ExcThread(monitor, started 140330909284096)>']
[2026-03-05 04:38:49] 2026-03-05 04:38:44,342 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 04:38:49] 2026-03-05 04:38:44,342 | INFO     | [monitor] control thread has ended
[2026-03-05 04:38:49] 2026-03-05 04:38:48,652 | INFO     | all workflow threads have been joined
[2026-03-05 04:38:49] 2026-03-05 04:38:48,652 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 04:38:49] 2026-03-05 04:38:48,653 | INFO     | traces error code: 0
[2026-03-05 04:38:49] 2026-03-05 04:38:48,653 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 04:38:49] 2026-03-05 04:38:48,789 [wrapper] ==== pilot stdout END ====
[2026-03-05 04:38:49] 2026-03-05 04:38:48,793 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 04:38:49] 2026-03-05 04:38:48,797 [wrapper] pilotpid: 276723
[2026-03-05 04:38:49] 2026-03-05 04:38:48,800 [wrapper] Pilot exit status: 0
[2026-03-05 04:38:49] 2026-03-05 04:38:48,812 [wrapper] pandaids: 7040463498
[2026-03-05 04:38:49] 2026-03-05 04:38:48,892 [wrapper] cleanup supervisor_pilot  384969 276724
[2026-03-05 04:38:49] 2026-03-05 04:38:48,896 [wrapper] Test setup, not cleaning
[2026-03-05 04:38:49] 2026-03-05 04:38:48,900 [wrapper] apfmon messages muted
[2026-03-05 04:38:49] 2026-03-05 04:38:48,904 [wrapper] ==== wrapper stdout END ====
[2026-03-05 04:38:49] 2026-03-05 04:38:48,908 [wrapper] ==== wrapper stderr END ====
[2026-03-05 04:38:49]  *** Error codes and diagnostics ***
[2026-03-05 04:38:49]     "exeErrorCode": 0,
[2026-03-05 04:38:49]     "exeErrorDiag": "",
[2026-03-05 04:38:49]     "pilotErrorCode": 0,
[2026-03-05 04:38:49]     "pilotErrorDiag": "",
[2026-03-05 04:38:49]  *** Listing of results directory ***
[2026-03-05 04:38:49] total 469424
[2026-03-05 04:38:49] -rw-r--r-- 1 boinc boinc    584627 Mar  4 18:40 pilot3.tar.gz
[2026-03-05 04:38:49] -rw-r--r-- 1 boinc boinc      5111 Mar  4 19:35 queuedata.json
[2026-03-05 04:38:49] -rwx------ 1 boinc boinc     36322 Mar  4 19:35 runpilot2-wrapper.sh
[2026-03-05 04:38:49] -rw-r--r-- 1 boinc boinc       100 Mar  5 01:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 04:38:49] -rwxr-xr-x 1 boinc boinc      7986 Mar  5 01:52 run_atlas
[2026-03-05 04:38:49] -rw-r--r-- 1 boinc boinc       105 Mar  5 01:52 job.xml
[2026-03-05 04:38:49] -rw-r--r-- 2 boinc boinc 272881335 Mar  5 01:52 EVNT.48958625._000030.pool.root.1
[2026-03-05 04:38:49] -rw-r--r-- 2 boinc boinc    597936 Mar  5 01:52 input.tar.gz
[2026-03-05 04:38:49] -rw-r--r-- 2 boinc boinc     15845 Mar  5 01:52 start_atlas.sh
[2026-03-05 04:38:49] drwxrwx--x 2 boinc boinc      4096 Mar  5 01:52 shared
[2026-03-05 04:38:49] -rw-r--r-- 1 boinc boinc         0 Mar  5 01:52 boinc_setup_complete
[2026-03-05 04:38:49] -rw-r--r-- 1 boinc boinc      6533 Mar  5 01:52 init_data.xml
[2026-03-05 04:38:49] -rw-r--r-- 1 boinc boinc         0 Mar  5 01:52 boinc_lockfile
[2026-03-05 04:38:49] -rw-r--r-- 1 boinc boinc      2515 Mar  5 01:52 pandaJob.out
[2026-03-05 04:38:49] -rw------- 1 boinc boinc        50 Mar  5 01:52 setup.sh.local
[2026-03-05 04:38:49] -rw------- 1 boinc boinc    997757 Mar  5 01:52 agis_schedconf.cvmfs.json
[2026-03-05 04:38:49] -rw------- 1 boinc boinc   1521291 Mar  5 01:52 agis_ddmendpoints.agis.ALL.json
[2026-03-05 04:38:49] -rw------- 1 boinc boinc       427 Mar  5 01:52 workernode_map.json
[2026-03-05 04:38:49] drwx------ 5 boinc boinc      4096 Mar  5 01:52 pilot3
[2026-03-05 04:38:49] -rw------- 1 boinc boinc 200311854 Mar  5 04:36 HITS.48958627._000726.pool.root.1
[2026-03-05 04:38:49] -rw-r--r-- 1 boinc boinc       530 Mar  5 04:37 boinc_task_state.xml
[2026-03-05 04:38:49] -rw------- 1 boinc boinc      1038 Mar  5 04:37 memory_monitor_summary.json
[2026-03-05 04:38:49] -rw------- 1 boinc boinc    382955 Mar  5 04:37 log.48958627._000726.job.log.tgz.1
[2026-03-05 04:38:49] -rw------- 1 boinc boinc      6328 Mar  5 04:37 heartbeat.json
[2026-03-05 04:38:49] -rw------- 1 boinc boinc        95 Mar  5 04:38 pilot_heartbeat.json
[2026-03-05 04:38:49] -rw-r--r-- 1 boinc boinc      8192 Mar  5 04:38 boinc_mmap_file
[2026-03-05 04:38:49] -rw-r--r-- 1 boinc boinc        28 Mar  5 04:38 wrapper_checkpoint.txt
[2026-03-05 04:38:49] -rw------- 1 boinc boinc      5373 Mar  5 04:38 pilotlog.txt
[2026-03-05 04:38:49] -rw------- 1 boinc boinc   1393834 Mar  5 04:38 log.48958627._000726.job.log.1
[2026-03-05 04:38:49] -rw------- 1 boinc boinc       357 Mar  5 04:38 output.list
[2026-03-05 04:38:49] -rw-r--r-- 1 boinc boinc       620 Mar  5 04:38 runtime_log
[2026-03-05 04:38:49] -rw------- 1 boinc boinc   1792000 Mar  5 04:38 result.tar.gz
[2026-03-05 04:38:49] -rw-r--r-- 1 boinc boinc      9424 Mar  5 04:38 runtime_log.err
[2026-03-05 04:38:49] -rw------- 1 boinc boinc       653 Mar  5 04:38 fayMDmIB7H9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm7VLLDmlSqcnn.diag
[2026-03-05 04:38:49] -rw-r--r-- 1 boinc boinc     20890 Mar  5 04:38 stderr.txt
[2026-03-05 04:38:49] HITS file was successfully produced:
[2026-03-05 04:38:49] -rw------- 1 boinc boinc 200311854 Mar  5 04:36 shared/HITS.pool.root.1
[2026-03-05 04:38:49]  *** Contents of shared directory: ***
[2026-03-05 04:38:49] total 464468
[2026-03-05 04:38:49] -rw-r--r-- 2 boinc boinc 272881335 Mar  5 01:52 ATLAS.root_0
[2026-03-05 04:38:49] -rw-r--r-- 2 boinc boinc    597936 Mar  5 01:52 input.tar.gz
[2026-03-05 04:38:49] -rw-r--r-- 2 boinc boinc     15845 Mar  5 01:52 start_atlas.sh
[2026-03-05 04:38:49] -rw------- 1 boinc boinc 200311854 Mar  5 04:36 HITS.pool.root.1
[2026-03-05 04:38:49] -rw------- 1 boinc boinc   1792000 Mar  5 04:38 result.tar.gz
04:38:50 (272699): run_atlas exited; CPU time 73874.111690
04:38:50 (272699): called boinc_finish(0)

</stderr_txt>
]]>

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