Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:06:35 (915018): wrapper (7.7.26015): starting
01:06:35 (915018): wrapper: running run_atlas (--nthreads 4)
[2026-03-05 01:06:35] Arguments: --nthreads 4
[2026-03-05 01:06:35] Threads: 4
[2026-03-05 01:06:35] Checking for CVMFS
[2026-03-05 01:06:35] No cvmfs_config command found, will try listing directly
[2026-03-05 01:06:35] CVMFS is ok
[2026-03-05 01:06:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-05 01:06:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-05 01:06:35] Further information can be found at the LHC@home message board.
[2026-03-05 01:06:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 01:06:35] Checking for apptainer binary...
[2026-03-05 01:06:35] which: no apptainer in ((null))
[2026-03-05 01:06:35] apptainer is not installed, using version from CVMFS
[2026-03-05 01:06:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 01:06:36] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot84/slots/2/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2026-03-05 01:06:36] apptainer works
[2026-03-05 01:06:36] Set ATHENA_PROC_NUMBER=4
[2026-03-05 01:06:36] Set ATHENA_CORE_NUMBER=4
[2026-03-05 01:06:36] Starting ATLAS job with PandaID=7040501796
[2026-03-05 01:06:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot84/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 02:51:43]  *** The last 200 lines of the pilot log: ***
[2026-03-05 02:51:43]  storage_token=
[2026-03-05 02:51:43]  surl=/var/lib/boinc/var/slot84/slots/2/PanDA_Pilot-7040501796/log.48958627._001179.job.log.tgz.1
[2026-03-05 02:51:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2a/44/log.48958627._001179.job.log.tgz.1
[2026-03-05 02:51:43]  workdir=None
[2026-03-05 02:51:43] ]
[2026-03-05 02:51:43] 2026-03-05 01:47:24,280 | INFO     | transferring file log.48958627._001179.job.log.tgz.1 from /var/lib/boinc/var/slot84/slots/2/PanDA_Pilot-7040501796/log.48958627._001179.job.log.tgz.1 to /var/lib/b
[2026-03-05 02:51:43] 2026-03-05 01:47:24,280 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot84/slots/2/PanDA_Pilot-7040501796/log.48958627._001179.job.log.tgz.1 /var/lib/boinc/var/slot84/slots/2/lo
[2026-03-05 02:51:43] 2026-03-05 01:47:24,298 | INFO     | adding to output.list: log.48958627._001179.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2a/44/log.48958627._001179.job.log.tg
[2026-03-05 02:51:43] 2026-03-05 01:47:24,299 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-05 02:51:43] 2026-03-05 01:47:24,299 | INFO     | summary of transferred files:
[2026-03-05 02:51:43] 2026-03-05 01:47:24,299 | INFO     |  -- lfn=log.48958627._001179.job.log.tgz.1, status_code=0, status=transferred
[2026-03-05 02:51:43] 2026-03-05 01:47:24,299 | INFO     | stage-out finished correctly
[2026-03-05 02:51:43] 2026-03-05 01:47:24,783 | INFO     | time since job start (6036s) is within the limit (349056.0s)
[2026-03-05 02:51:43] 2026-03-05 01:47:25,158 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-05 02:51:43] 2026-03-05 01:47:26,788 | INFO     | time since job start (6038s) is within the limit (349056.0s)
[2026-03-05 02:51:43] 2026-03-05 01:47:27,686 | INFO     | job 7040501796 has state=finished
[2026-03-05 02:51:43] 2026-03-05 01:47:27,686 | INFO     | preparing for final server update for job 7040501796 in state='finished'
[2026-03-05 02:51:43] 2026-03-05 01:47:28,215 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-05 02:51:43] 2026-03-05 01:47:28,215 | INFO     | reading metadata from: /var/lib/boinc/var/slot84/slots/2/PanDA_Pilot-7040501796/jobReport.json
[2026-03-05 02:51:43] 2026-03-05 01:47:28,216 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot84/slots/2/workernode_map.json
[2026-03-05 02:51:43] 2026-03-05 01:47:28,217 | INFO     | this job has now completed (state=finished)
[2026-03-05 02:51:43] 2026-03-05 01:47:28,217 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-05 02:51:43] 2026-03-05 01:47:28,217 | INFO     | log transfer has been attempted: DONE
[2026-03-05 02:51:43] 2026-03-05 01:47:28,217 | INFO     | job 7040501796 has finished - writing final server update
[2026-03-05 02:51:43] 2026-03-05 01:47:28,217 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3965509/.job.ad'
[2026-03-05 02:51:43] 2026-03-05 01:47:28,217 | INFO     | total number of processed events: 400 (read)
[2026-03-05 02:51:43] 2026-03-05 01:47:28,234 | INFO     | using path: /var/lib/boinc/var/slot84/slots/2/PanDA_Pilot-7040501796/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 02:51:43] 2026-03-05 01:47:28,235 | INFO     | extracted standard info from prmon json
[2026-03-05 02:51:43] 2026-03-05 01:47:28,235 | INFO     | extracted standard memory fields from prmon json
[2026-03-05 02:51:43] 2026-03-05 01:47:28,235 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-05 02:51:43] 2026-03-05 01:47:28,235 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-05 02:51:43] 2026-03-05 01:47:28,235 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-05 02:51:43] 2026-03-05 01:47:28,237 | INFO     | fitting pss+swap vs Time
[2026-03-05 02:51:43] 2026-03-05 01:47:28,237 | INFO     | sum of square deviations: 241429643.0
[2026-03-05 02:51:43] 2026-03-05 01:47:28,237 | INFO     | sum of deviations: 1731614380.9999998
[2026-03-05 02:51:43] 2026-03-05 01:47:28,237 | INFO     | mean x: 1772672309.5
[2026-03-05 02:51:43] 2026-03-05 01:47:28,237 | INFO     | mean y: 2354670.695652174
[2026-03-05 02:51:43] 2026-03-05 01:47:28,237 | INFO     | intersect: -12711845730.663857
[2026-03-05 02:51:43] 2026-03-05 01:47:28,237 | INFO     | chi2: 0.0008969095500211211
[2026-03-05 02:51:43] 2026-03-05 01:47:28,237 | INFO     | current memory leak: 7.17 B/s (using 92 data points, chi2=0.00)
[2026-03-05 02:51:43] 2026-03-05 01:47:28,237 | INFO     | could have reported an average CPU frequency of 3614 MHz (7 samples)
[2026-03-05 02:51:43] 2026-03-05 01:47:28,237 | INFO     | ..............................
[2026-03-05 02:51:43] 2026-03-05 01:47:28,237 | INFO     | . Timing measurements:
[2026-03-05 02:51:43] 2026-03-05 01:47:28,238 | INFO     | . get job = 0 s
[2026-03-05 02:51:43] 2026-03-05 01:47:28,238 | INFO     | . initial setup = 5 s
[2026-03-05 02:51:43] 2026-03-05 01:47:28,238 | INFO     | . payload setup = 5 s
[2026-03-05 02:51:43] 2026-03-05 01:47:28,238 | INFO     | . stage-in = 0 s
[2026-03-05 02:51:43] 2026-03-05 01:47:28,238 | INFO     | . payload execution = 6015 s
[2026-03-05 02:51:43] 2026-03-05 01:47:28,238 | INFO     | . stage-out = 0 s
[2026-03-05 02:51:43] 2026-03-05 01:47:28,238 | INFO     | . log creation = 0 s
[2026-03-05 02:51:43] 2026-03-05 01:47:28,238 | INFO     | ..............................
[2026-03-05 02:51:43] 2026-03-05 01:47:28,357 | INFO     | 
[2026-03-05 02:51:43] 2026-03-05 01:47:28,357 | INFO     | job summary report
[2026-03-05 02:51:43] 2026-03-05 01:47:28,357 | INFO     | --------------------------------------------------
[2026-03-05 02:51:43] 2026-03-05 01:47:28,357 | INFO     | PanDA job id: 7040501796
[2026-03-05 02:51:43] 2026-03-05 01:47:28,357 | INFO     | task id: 48958627
[2026-03-05 02:51:43] 2026-03-05 01:47:28,357 | INFO     | errors: (none)
[2026-03-05 02:51:43] 2026-03-05 01:47:28,357 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-05 02:51:43] 2026-03-05 01:47:28,357 | INFO     | pilot state: finished 
[2026-03-05 02:51:43] 2026-03-05 01:47:28,357 | INFO     | transexitcode: 0
[2026-03-05 02:51:43] 2026-03-05 01:47:28,357 | INFO     | exeerrorcode: 0
[2026-03-05 02:51:43] 2026-03-05 01:47:28,357 | INFO     | exeerrordiag: 
[2026-03-05 02:51:43] 2026-03-05 01:47:28,357 | INFO     | exitcode: 0
[2026-03-05 02:51:43] 2026-03-05 01:47:28,357 | INFO     | exitmsg: OK
[2026-03-05 02:51:43] 2026-03-05 01:47:28,358 | INFO     | cpuconsumptiontime: 23095 s
[2026-03-05 02:51:43] 2026-03-05 01:47:28,358 | INFO     | nevents: 400
[2026-03-05 02:51:43] 2026-03-05 01:47:28,358 | INFO     | neventsw: 0
[2026-03-05 02:51:43] 2026-03-05 01:47:28,358 | INFO     | pid: 946981
[2026-03-05 02:51:43] 2026-03-05 01:47:28,358 | INFO     | pgrp: 946981
[2026-03-05 02:51:43] 2026-03-05 01:47:28,358 | INFO     | corecount: 4
[2026-03-05 02:51:43] 2026-03-05 01:47:28,358 | INFO     | event service: False
[2026-03-05 02:51:43] 2026-03-05 01:47:28,358 | INFO     | sizes: {0: 2295760, 11: 2295760, 6023: 2322534, 6024: 2331554, 6025: 2331610, 6028: 2331804}
[2026-03-05 02:51:43] 2026-03-05 01:47:28,358 | INFO     | --------------------------------------------------
[2026-03-05 02:51:43] 2026-03-05 01:47:28,358 | INFO     | 
[2026-03-05 02:51:43] 2026-03-05 01:47:28,358 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot84/slots/2
[2026-03-05 02:51:43] 2026-03-05 01:47:28,378 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-05 02:51:43] 2026-03-05 01:47:28,378 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-05 02:51:43] 2026-03-05 01:47:28,378 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-05 02:51:43] 2026-03-05 01:47:28,378 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-05 02:51:43] 2026-03-05 01:47:28,378 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-05 02:51:43] 2026-03-05 01:47:28,378 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-05 02:51:43] 2026-03-05 01:47:28,378 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-05 02:51:43] 2026-03-05 01:47:28,378 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-05 02:51:43] 2026-03-05 01:47:28,378 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-05 02:51:43] 2026-03-05 01:47:28,378 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-05 02:51:43] 2026-03-05 01:47:28,378 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-05 02:51:43] 2026-03-05 01:47:28,378 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-05 02:51:43] 2026-03-05 01:47:28,378 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-05 02:51:43] 2026-03-05 01:47:28,378 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-05 02:51:43] 2026-03-05 01:47:28,378 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-05 02:51:43] 2026-03-05 01:47:28,378 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-05 02:51:43] 2026-03-05 01:47:28,378 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-05 02:51:43] 2026-03-05 01:47:28,378 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-05 02:51:43] 2026-03-05 01:47:28,379 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-05 02:51:43] 2026-03-05 01:47:28,379 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-05 02:51:43] 2026-03-05 01:47:28,379 | INFO     | job 7040501796 has completed (purged errors)
[2026-03-05 02:51:43] 2026-03-05 01:47:28,379 | INFO     | overall cleanup function is called
[2026-03-05 02:51:43] 2026-03-05 01:47:28,903 | WARNING  | process 946981 can no longer be monitored (due to stat problems) - aborting
[2026-03-05 02:51:43] 2026-03-05 01:47:29,234 | INFO     | using path: /var/lib/boinc/var/slot84/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 02:51:43] 2026-03-05 01:47:29,234 | INFO     | using path: /var/lib/boinc/var/slot84/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 02:51:43] 2026-03-05 01:47:29,235 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-05 02:51:43] 2026-03-05 01:47:29,235 | WARNING  | maxPSS not found in memory monitor output
[2026-03-05 02:51:43] 2026-03-05 01:47:29,235 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot84/slots/2/PanDA_Pilot-7040501796/payload.stdout) since it has not been created yet
[2026-03-05 02:51:43] 2026-03-05 01:47:29,235 | INFO     | executing command: df -mP /var/lib/boinc/var/slot84/slots/2
[2026-03-05 02:51:43] 2026-03-05 01:47:29,252 | INFO     | sufficient remaining disk space (19097714688 B)
[2026-03-05 02:51:43] 2026-03-05 01:47:29,252 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-05 02:51:43] 2026-03-05 01:47:29,252 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot84/slots/2/PanDA_Pilot-7040501796/HITS.48958627._001179.pool.root.1 since it does not exist
[2026-03-05 02:51:43] 2026-03-05 01:47:29,385 | INFO     | --- collectZombieJob: --- 10, [946981]
[2026-03-05 02:51:43] 2026-03-05 01:47:29,385 | INFO     | zombie collector waiting for pid 946981
[2026-03-05 02:51:43] 2026-03-05 01:47:29,385 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 02:51:43] 2026-03-05 01:47:29,385 | INFO     | collected zombie processes
[2026-03-05 02:51:43] 2026-03-05 01:47:29,386 | INFO     | will attempt to kill all subprocesses of pid=946981
[2026-03-05 02:51:43] 2026-03-05 01:47:30,431 | INFO     | number of running child processes to parent process 946981: 1
[2026-03-05 02:51:43] 2026-03-05 01:47:30,431 | INFO     | maximum number of monitored processes: 6
[2026-03-05 02:51:43] 2026-03-05 01:47:30,431 | INFO     | aborting job monitoring since job object (job id=7040501796) has expired
[2026-03-05 02:51:43] 2026-03-05 01:47:30,560 | INFO     | process IDs to be killed: [946981] (in reverse order)
[2026-03-05 02:51:43] 2026-03-05 01:47:30,768 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 02:51:43] 2026-03-05 01:47:30,768 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 02:51:43] 2026-03-05 01:47:30,801 | INFO     | did not find any defunct processes belonging to 946981
[2026-03-05 02:51:43] 2026-03-05 01:47:30,832 | INFO     | did not find any defunct processes belonging to 946981
[2026-03-05 02:51:43] 2026-03-05 01:47:30,832 | INFO     | ready for new job
[2026-03-05 02:51:43] 2026-03-05 01:47:30,832 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 02:51:43] 2026-03-05 01:47:30,833 | INFO     | **************************************
[2026-03-05 02:51:43] 2026-03-05 01:47:30,834 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 02:51:43] 2026-03-05 01:47:30,834 | INFO     | **************************************
[2026-03-05 02:51:43] 2026-03-05 01:47:30,834 | INFO     | 
[2026-03-05 02:51:43] 2026-03-05 01:47:30,839 | INFO     | architecture information:
[2026-03-05 02:51:43] 2026-03-05 01:47:30,840 | INFO     | executing command: cat /etc/os-release
[2026-03-05 02:51:43] 2026-03-05 01:47:30,852 | INFO     | cat /etc/os-release:
[2026-03-05 02:51:43] NAME="CentOS Linux"
[2026-03-05 02:51:43] VERSION="7 (Core)"
[2026-03-05 02:51:43] ID="centos"
[2026-03-05 02:51:43] ID_LIKE="rhel fedora"
[2026-03-05 02:51:43] VERSION_ID="7"
[2026-03-05 02:51:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 02:51:43] ANSI_COLOR="0;31"
[2026-03-05 02:51:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 02:51:43] HOME_URL="https://www.centos.org/"
[2026-03-05 02:51:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 02:51:43] 
[2026-03-05 02:51:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 02:51:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 02:51:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 02:51:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 02:51:43] 
[2026-03-05 02:51:43] 2026-03-05 01:47:30,853 | INFO     | **************************************
[2026-03-05 02:51:43] 2026-03-05 01:47:31,356 | INFO     | executing command: df -mP /var/lib/boinc/var/slot84/slots/2
[2026-03-05 02:51:43] 2026-03-05 01:47:31,372 | INFO     | sufficient remaining disk space (19098763264 B)
[2026-03-05 02:51:43] 2026-03-05 01:47:31,372 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 02:51:43] 2026-03-05 01:47:31,372 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 02:51:43] 2026-03-05 01:47:31,372 | INFO     | update_server=False
[2026-03-05 02:51:43] 2026-03-05 01:47:31,372 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 02:51:43] 2026-03-05 01:47:31,372 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 02:51:43] 2026-03-05 01:47:31,373 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 02:51:43] 2026-03-05 01:47:31,373 | INFO     | will abort loop
[2026-03-05 02:51:43] 2026-03-05 01:47:31,674 | INFO     | all payload control threads have been joined
[2026-03-05 02:51:43] 2026-03-05 01:47:31,990 | INFO     | all job control threads have been joined
[2026-03-05 02:51:43] 2026-03-05 01:47:32,202 | INFO     | all data control threads have been joined
[2026-03-05 02:51:43] 2026-03-05 01:47:32,358 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 02:51:43] 2026-03-05 01:47:32,377 | INFO     | [job] retrieve thread has finished
[2026-03-05 02:51:43] 2026-03-05 01:47:32,378 | INFO     | [job] job monitor thread has finished
[2026-03-05 02:51:43] 2026-03-05 01:47:32,405 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 02:51:43] 2026-03-05 01:47:32,546 | INFO     | [payload] validate_post thread has finished
[2026-03-05 02:51:43] 2026-03-05 01:47:32,581 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 02:51:43] 2026-03-05 01:47:32,679 | INFO     | [payload] control thread has finished
[2026-03-05 02:51:43] 2026-03-05 01:47:32,753 | INFO     | [data] copytool_in thread has finished
[2026-03-05 02:51:43] 2026-03-05 01:47:32,995 | INFO     | [job] control thread has finished
[2026-03-05 02:51:43] 2026-03-05 01:47:33,207 | INFO     | [data] control thread has finished
[2026-03-05 02:51:43] 2026-03-05 01:47:33,289 | INFO     | [payload] failed_post thread has finished
[2026-03-05 02:51:43] 2026-03-05 01:47:33,297 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 02:51:43] 2026-03-05 01:47:33,502 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 02:51:43] 2026-03-05 01:47:33,755 | INFO     | [job] validate thread has finished
[2026-03-05 02:51:43] 2026-03-05 01:47:34,302 | INFO     | [job] queue monitor thread has finished
[2026-03-05 02:51:43] 2026-03-05 01:47:34,363 | INFO     | [data] copytool_out thread has finished
[2026-03-05 02:51:43] 2026-03-05 01:47:35,378 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 02:51:43] 2026-03-05 01:47:42,302 | INFO     | job.realtimelogging is not enabled
[2026-03-05 02:51:43] 2026-03-05 01:47:43,307 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 02:51:43] 2026-03-05 01:47:58,448 | INFO     | [monitor] cgroup control has ended
[2026-03-05 02:51:43] 2026-03-05 01:47:58,506 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22931707447104)>', '<ExcThread(monitor, started 22931467151104)>']
[2026-03-05 02:51:43] 2026-03-05 01:48:00,422 | INFO     | PID=924541 has CPU usage=9.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-05 02:51:43] 2026-03-05 01:48:00,422 | INFO     | .. there are 46 such processes running
[2026-03-05 02:51:43] 2026-03-05 01:48:00,422 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 02:51:43] 2026-03-05 01:48:00,422 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 02:51:43] 2026-03-05 01:48:00,422 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 02:51:43] 2026-03-05 01:48:00,422 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 02:51:43] 2026-03-05 01:48:00,422 | INFO     | [monitor] control thread has ended
[2026-03-05 02:51:43] 2026-03-05 01:48:03,531 | INFO     | all workflow threads have been joined
[2026-03-05 02:51:43] 2026-03-05 01:48:03,531 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 02:51:43] 2026-03-05 01:48:03,531 | INFO     | traces error code: 0
[2026-03-05 02:51:43] 2026-03-05 01:48:03,531 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 02:51:43] 2026-03-05 01:48:03,676 [wrapper] ==== pilot stdout END ====
[2026-03-05 02:51:43] 2026-03-05 01:48:03,679 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 02:51:43] 2026-03-05 01:48:03,681 [wrapper] pilotpid: 924541
[2026-03-05 02:51:43] 2026-03-05 01:48:03,684 [wrapper] Pilot exit status: 0
[2026-03-05 02:51:43] 2026-03-05 01:48:03,693 [wrapper] pandaids: 7040501796
[2026-03-05 02:51:43] 2026-03-05 01:48:03,831 [wrapper] cleanup supervisor_pilot 1734477 924542
[2026-03-05 02:51:43] 2026-03-05 01:48:03,834 [wrapper] Test setup, not cleaning
[2026-03-05 02:51:43] 2026-03-05 01:48:03,835 [wrapper] apfmon messages muted
[2026-03-05 02:51:43] 2026-03-05 01:48:03,837 [wrapper] ==== wrapper stdout END ====
[2026-03-05 02:51:43] 2026-03-05 01:48:03,840 [wrapper] ==== wrapper stderr END ====
[2026-03-05 02:51:43]  *** Error codes and diagnostics ***
[2026-03-05 02:51:43]     "exeErrorCode": 0,
[2026-03-05 02:51:43]     "exeErrorDiag": "",
[2026-03-05 02:51:43]     "pilotErrorCode": 0,
[2026-03-05 02:51:43]     "pilotErrorDiag": "",
[2026-03-05 02:51:43]  *** Listing of results directory ***
[2026-03-05 02:51:43] total 473356
[2026-03-05 02:51:43] -rwx------. 1 boinc boinc     36322 Mar  4 20:38 runpilot2-wrapper.sh
[2026-03-05 02:51:43] -rw-r--r--. 1 boinc boinc    584627 Mar  4 20:40 pilot3.tar.gz
[2026-03-05 02:51:43] -rw-r--r--. 1 boinc boinc      5111 Mar  4 20:40 queuedata.json
[2026-03-05 02:51:43] -rw-r--r--. 1 boinc boinc       100 Mar  5 01:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 02:51:43] -rwxr-xr-x. 1 boinc boinc      7986 Mar  5 01:06 run_atlas
[2026-03-05 02:51:43] -rw-r--r--. 1 boinc boinc       105 Mar  5 01:06 job.xml
[2026-03-05 02:51:43] -rw-r--r--. 2 boinc boinc 272982826 Mar  5 01:06 EVNT.48958625._000048.pool.root.1
[2026-03-05 02:51:43] -rw-r--r--. 2 boinc boinc     15845 Mar  5 01:06 start_atlas.sh
[2026-03-05 02:51:43] drwxrwx--x. 2 boinc boinc      4096 Mar  5 01:06 shared
[2026-03-05 02:51:43] -rw-r--r--. 2 boinc boinc    597936 Mar  5 01:06 input.tar.gz
[2026-03-05 02:51:43] -rw-r--r--. 1 boinc boinc      6703 Mar  5 01:06 init_data.xml
[2026-03-05 02:51:43] -rw-r--r--. 1 boinc boinc         0 Mar  5 01:06 boinc_lockfile
[2026-03-05 02:51:43] -rw-r--r--. 1 boinc boinc      2520 Mar  5 01:06 pandaJob.out
[2026-03-05 02:51:43] -rw-------. 1 boinc boinc    997765 Mar  5 01:06 agis_schedconf.cvmfs.json
[2026-03-05 02:51:43] -rw-------. 1 boinc boinc   1521291 Mar  5 01:06 agis_ddmendpoints.agis.ALL.json
[2026-03-05 02:51:43] -rw-------. 1 boinc boinc       444 Mar  5 01:06 workernode_map.json
[2026-03-05 02:51:43] drwx------. 5 boinc boinc      4096 Mar  5 01:06 pilot3
[2026-03-05 02:51:43] -rw-------. 1 boinc boinc 205515901 Mar  5 02:46 HITS.48958627._001179.pool.root.1
[2026-03-05 02:51:43] -rw-r--r--. 1 boinc boinc       529 Mar  5 02:47 boinc_task_state.xml
[2026-03-05 02:51:43] -rw-------. 1 boinc boinc      1033 Mar  5 02:47 memory_monitor_summary.json
[2026-03-05 02:51:43] -rw-------. 1 boinc boinc        95 Mar  5 02:47 pilot_heartbeat.json
[2026-03-05 02:51:43] -rw-------. 1 boinc boinc    272962 Mar  5 02:47 log.48958627._001179.job.log.tgz.1
[2026-03-05 02:51:43] -rw-------. 1 boinc boinc      6353 Mar  5 02:47 heartbeat.json
[2026-03-05 02:51:43] -rw-------. 1 boinc boinc      4902 Mar  5 02:48 pilotlog.txt
[2026-03-05 02:51:43] -rw-------. 1 boinc boinc    868198 Mar  5 02:48 log.48958627._001179.job.log.1
[2026-03-05 02:51:43] -rw-------. 1 boinc boinc       357 Mar  5 02:48 output.list
[2026-03-05 02:51:43] -rw-r--r--. 1 boinc boinc       620 Mar  5 02:48 runtime_log
[2026-03-05 02:51:43] -rw-------. 1 boinc boinc   1157120 Mar  5 02:48 result.tar.gz
[2026-03-05 02:51:43] -rw-r--r--. 1 boinc boinc      9204 Mar  5 02:48 runtime_log.err
[2026-03-05 02:51:43] -rw-------. 1 boinc boinc       662 Mar  5 02:48 bmeNDmME7H9n9Rq4apOajLDm4fhM0noT9bVooX4SDmHbJLDmIq6Lln.diag
[2026-03-05 02:51:43] -rw-r--r--. 1 boinc boinc        27 Mar  5 02:51 wrapper_checkpoint.txt
[2026-03-05 02:51:43] -rw-r--r--. 1 boinc boinc      8192 Mar  5 02:51 boinc_mmap_file
[2026-03-05 02:51:43] -rw-r--r--. 1 boinc boinc     22255 Mar  5 02:51 stderr.txt
[2026-03-05 02:51:43] HITS file was successfully produced:
[2026-03-05 02:51:43] -rw-------. 1 boinc boinc 205515901 Mar  5 02:46 shared/HITS.pool.root.1
[2026-03-05 02:51:43]  *** Contents of shared directory: ***
[2026-03-05 02:51:43] total 469028
[2026-03-05 02:51:43] -rw-r--r--. 2 boinc boinc 272982826 Mar  5 01:06 ATLAS.root_0
[2026-03-05 02:51:43] -rw-r--r--. 2 boinc boinc     15845 Mar  5 01:06 start_atlas.sh
[2026-03-05 02:51:43] -rw-r--r--. 2 boinc boinc    597936 Mar  5 01:06 input.tar.gz
[2026-03-05 02:51:43] -rw-------. 1 boinc boinc 205515901 Mar  5 02:46 HITS.pool.root.1
[2026-03-05 02:51:43] -rw-------. 1 boinc boinc   1157120 Mar  5 02:48 result.tar.gz
02:51:44 (915018): run_atlas exited; CPU time 23394.183282
02:51:44 (915018): called boinc_finish(0)

</stderr_txt>
]]>

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