Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:12:24 (31914): wrapper (7.7.26015): starting
10:12:24 (31914): wrapper: running run_atlas (--nthreads 8)
[2026-03-05 10:12:24] Arguments: --nthreads 8
[2026-03-05 10:12:24] Threads: 8
[2026-03-05 10:12:24] Checking for CVMFS
[2026-03-05 10:12:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-05 10:12:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-05 10:12:26] Running cvmfs_config stat atlas.cern.ch
[2026-03-05 10:12:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-05 10:12:27] 2.11.2.0 27707 114419 135672 156913 0 93 13180035 25165824 1088 130560 155 38113067 99.812 29433778 1003 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-05 10:12:27] CVMFS is ok
[2026-03-05 10:12:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 10:12:27] Checking for apptainer binary...
[2026-03-05 10:12:27] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-05 10:12:27] Running /usr/bin/apptainer --version
[2026-03-05 10:12:27] apptainer version 1.3.2-1.el7
[2026-03-05 10:12:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 10:12:34] cg-vwn470.simple-grid.lan
[2026-03-05 10:12:34] apptainer works
[2026-03-05 10:12:34] Set ATHENA_PROC_NUMBER=8
[2026-03-05 10:12:34] Set ATHENA_CORE_NUMBER=8
[2026-03-05 10:12:34] Starting ATLAS job with PandaID=7038522422
[2026-03-05 10:12:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 14:08:40]  *** The last 200 lines of the pilot log: ***
[2026-03-05 14:08:40] 2026-03-05 13:07:37,282 | INFO     | total number of processed events: 400 (read)
[2026-03-05 14:08:40] 2026-03-05 13:07:37,284 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-7038522422/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 14:08:40] 2026-03-05 13:07:37,285 | INFO     | extracted standard info from prmon json
[2026-03-05 14:08:40] 2026-03-05 13:07:37,285 | INFO     | extracted standard memory fields from prmon json
[2026-03-05 14:08:40] 2026-03-05 13:07:37,285 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-05 14:08:40] 2026-03-05 13:07:37,285 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-05 14:08:40] 2026-03-05 13:07:37,285 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-05 14:08:40] 2026-03-05 13:07:37,290 | INFO     | fitting pss+swap vs Time
[2026-03-05 14:08:40] 2026-03-05 13:07:37,290 | INFO     | sum of square deviations: 3301699115.0
[2026-03-05 14:08:40] 2026-03-05 13:07:37,292 | INFO     | sum of deviations: 51049286397.49997
[2026-03-05 14:08:40] 2026-03-05 13:07:37,292 | INFO     | mean x: 1772709340.5
[2026-03-05 14:08:40] 2026-03-05 13:07:37,292 | INFO     | mean y: 2453152.159090909
[2026-03-05 14:08:40] 2026-03-05 13:07:37,292 | INFO     | intersect: -27406327500.074203
[2026-03-05 14:08:40] 2026-03-05 13:07:37,293 | INFO     | chi2: 7.353376362548116
[2026-03-05 14:08:40] 2026-03-05 13:07:37,293 | INFO     | sum of square deviations: 3081657780.0
[2026-03-05 14:08:40] 2026-03-05 13:07:37,295 | INFO     | sum of deviations: 64758600582.999985
[2026-03-05 14:08:40] 2026-03-05 13:07:37,295 | INFO     | mean x: 1772709188.0
[2026-03-05 14:08:40] 2026-03-05 13:07:37,295 | INFO     | mean y: 2462464.2604651162
[2026-03-05 14:08:40] 2026-03-05 13:07:37,295 | INFO     | intersect: -37249618866.94634
[2026-03-05 14:08:40] 2026-03-05 13:07:37,295 | INFO     | chi2: 6.628580907555719
[2026-03-05 14:08:40] 2026-03-05 13:07:37,296 | INFO     | current chi2=6.628580907555719 (change=9.85663481994329 %)
[2026-03-05 14:08:40] 2026-03-05 13:07:37,296 | INFO     | right removable region: 214
[2026-03-05 14:08:40] 2026-03-05 13:07:37,296 | INFO     | sum of square deviations: 3081657780.0
[2026-03-05 14:08:40] 2026-03-05 13:07:37,298 | INFO     | sum of deviations: -24291401211.999992
[2026-03-05 14:08:40] 2026-03-05 13:07:37,298 | INFO     | mean x: 1772709493.0
[2026-03-05 14:08:40] 2026-03-05 13:07:37,298 | INFO     | mean y: 2505321.4046511627
[2026-03-05 14:08:40] 2026-03-05 13:07:37,298 | INFO     | intersect: 13976022370.00571
[2026-03-05 14:08:40] 2026-03-05 13:07:37,298 | INFO     | chi2: 2.568787364573115
[2026-03-05 14:08:40] 2026-03-05 13:07:37,299 | INFO     | current chi2=2.568787364573115 (change=65.06655938819688 %)
[2026-03-05 14:08:40] 2026-03-05 13:07:37,299 | INFO     | sum of square deviations: 2871616632.5
[2026-03-05 14:08:40] 2026-03-05 13:07:37,300 | INFO     | sum of deviations: -62775153497.0
[2026-03-05 14:08:40] 2026-03-05 13:07:37,301 | INFO     | mean x: 1772709645.5
[2026-03-05 14:08:40] 2026-03-05 13:07:37,301 | INFO     | mean y: 2533079.1428571427
[2026-03-05 14:08:40] 2026-03-05 13:07:37,301 | INFO     | intersect: 38754962230.86911
[2026-03-05 14:08:40] 2026-03-05 13:07:37,301 | INFO     | chi2: 1.0555776131613097
[2026-03-05 14:08:40] 2026-03-05 13:07:37,301 | INFO     | current chi2=1.0555776131613097 (change=58.9075519554836 %)
[2026-03-05 14:08:40] 2026-03-05 13:07:37,302 | INFO     | sum of square deviations: 2671343110.0
[2026-03-05 14:08:40] 2026-03-05 13:07:37,303 | INFO     | sum of deviations: -61469889649.00001
[2026-03-05 14:08:40] 2026-03-05 13:07:37,303 | INFO     | mean x: 1772709798.0
[2026-03-05 14:08:40] 2026-03-05 13:07:37,303 | INFO     | mean y: 2532039.9902439024
[2026-03-05 14:08:40] 2026-03-05 13:07:37,304 | INFO     | intersect: 40794100616.42859
[2026-03-05 14:08:40] 2026-03-05 13:07:37,304 | INFO     | chi2: 1.0356801723815112
[2026-03-05 14:08:40] 2026-03-05 13:07:37,304 | INFO     | current chi2=1.0356801723815112 (change=1.8849813156048654 %)
[2026-03-05 14:08:40] 2026-03-05 13:07:37,304 | INFO     | left removable region: 30
[2026-03-05 14:08:40] 2026-03-05 13:07:37,304 | INFO     | sum of square deviations: 1931608310.0
[2026-03-05 14:08:40] 2026-03-05 13:07:37,306 | INFO     | sum of deviations: -26997097295.499996
[2026-03-05 14:08:40] 2026-03-05 13:07:37,306 | INFO     | mean x: 1772710072.5
[2026-03-05 14:08:40] 2026-03-05 13:07:37,306 | INFO     | mean y: 2527193.570652174
[2026-03-05 14:08:40] 2026-03-05 13:07:37,306 | INFO     | intersect: 24778785431.968555
[2026-03-05 14:08:40] 2026-03-05 13:07:37,306 | INFO     | chi2: 0.1791948691086052
[2026-03-05 14:08:40] 2026-03-05 13:07:37,307 | INFO     | current memory leak: -13.98 B/s (using 184 data points, chi2=0.18)
[2026-03-05 14:08:40] 2026-03-05 13:07:37,307 | INFO     | could have reported an average CPU frequency of 2249 MHz (11 samples)
[2026-03-05 14:08:40] 2026-03-05 13:07:37,307 | INFO     | ..............................
[2026-03-05 14:08:40] 2026-03-05 13:07:37,308 | INFO     | . Timing measurements:
[2026-03-05 14:08:40] 2026-03-05 13:07:37,308 | INFO     | . get job = 0 s
[2026-03-05 14:08:40] 2026-03-05 13:07:37,308 | INFO     | . initial setup = 122 s
[2026-03-05 14:08:40] 2026-03-05 13:07:37,308 | INFO     | . payload setup = 148 s
[2026-03-05 14:08:40] 2026-03-05 13:07:37,308 | INFO     | . stage-in = 0 s
[2026-03-05 14:08:40] 2026-03-05 13:07:37,308 | INFO     | . payload execution = 13536 s
[2026-03-05 14:08:40] 2026-03-05 13:07:37,308 | INFO     | . stage-out = 1 s
[2026-03-05 14:08:40] 2026-03-05 13:07:37,308 | INFO     | . log creation = 0 s
[2026-03-05 14:08:40] 2026-03-05 13:07:37,308 | INFO     | ..............................
[2026-03-05 14:08:40] 2026-03-05 13:07:37,416 | INFO     | 
[2026-03-05 14:08:40] 2026-03-05 13:07:37,416 | INFO     | job summary report
[2026-03-05 14:08:40] 2026-03-05 13:07:37,416 | INFO     | --------------------------------------------------
[2026-03-05 14:08:40] 2026-03-05 13:07:37,416 | INFO     | PanDA job id: 7038522422
[2026-03-05 14:08:40] 2026-03-05 13:07:37,416 | INFO     | task id: 48955015
[2026-03-05 14:08:40] 2026-03-05 13:07:37,416 | INFO     | errors: (none)
[2026-03-05 14:08:40] 2026-03-05 13:07:37,417 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-05 14:08:40] 2026-03-05 13:07:37,417 | INFO     | pilot state: finished 
[2026-03-05 14:08:40] 2026-03-05 13:07:37,417 | INFO     | transexitcode: 0
[2026-03-05 14:08:40] 2026-03-05 13:07:37,417 | INFO     | exeerrorcode: 0
[2026-03-05 14:08:40] 2026-03-05 13:07:37,417 | INFO     | exeerrordiag: 
[2026-03-05 14:08:40] 2026-03-05 13:07:37,417 | INFO     | exitcode: 0
[2026-03-05 14:08:40] 2026-03-05 13:07:37,417 | INFO     | exitmsg: OK
[2026-03-05 14:08:40] 2026-03-05 13:07:37,417 | INFO     | cpuconsumptiontime: 50508 s
[2026-03-05 14:08:40] 2026-03-05 13:07:37,417 | INFO     | nevents: 400
[2026-03-05 14:08:40] 2026-03-05 13:07:37,417 | INFO     | neventsw: 0
[2026-03-05 14:08:40] 2026-03-05 13:07:37,417 | INFO     | pid: 7977
[2026-03-05 14:08:40] 2026-03-05 13:07:37,418 | INFO     | pgrp: 7977
[2026-03-05 14:08:40] 2026-03-05 13:07:37,418 | INFO     | corecount: 8
[2026-03-05 14:08:40] 2026-03-05 13:07:37,418 | INFO     | event service: False
[2026-03-05 14:08:40] 2026-03-05 13:07:37,418 | INFO     | sizes: {0: 2294666, 1: 2295351, 2: 2295812, 13: 2295812, 13688: 2326193, 13689: 2335191, 13693: 2335569}
[2026-03-05 14:08:40] 2026-03-05 13:07:37,418 | INFO     | --------------------------------------------------
[2026-03-05 14:08:40] 2026-03-05 13:07:37,418 | INFO     | 
[2026-03-05 14:08:40] 2026-03-05 13:07:37,418 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2026-03-05 14:08:40] 2026-03-05 13:07:37,445 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-05 14:08:40] 2026-03-05 13:07:37,445 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-05 14:08:40] 2026-03-05 13:07:37,445 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-05 14:08:40] 2026-03-05 13:07:37,445 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-05 14:08:40] 2026-03-05 13:07:37,445 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-05 14:08:40] 2026-03-05 13:07:37,446 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-05 14:08:40] 2026-03-05 13:07:37,446 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-05 14:08:40] 2026-03-05 13:07:37,446 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-05 14:08:40] 2026-03-05 13:07:37,446 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-05 14:08:40] 2026-03-05 13:07:37,446 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-05 14:08:40] 2026-03-05 13:07:37,446 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-05 14:08:40] 2026-03-05 13:07:37,446 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-05 14:08:40] 2026-03-05 13:07:37,446 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-05 14:08:40] 2026-03-05 13:07:37,447 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-05 14:08:40] 2026-03-05 13:07:37,447 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-05 14:08:40] 2026-03-05 13:07:37,447 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-05 14:08:40] 2026-03-05 13:07:37,447 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-05 14:08:40] 2026-03-05 13:07:37,447 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-05 14:08:40] 2026-03-05 13:07:37,447 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-05 14:08:40] 2026-03-05 13:07:37,447 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-05 14:08:40] 2026-03-05 13:07:37,448 | INFO     | job 7038522422 has completed (purged errors)
[2026-03-05 14:08:40] 2026-03-05 13:07:37,448 | INFO     | overall cleanup function is called
[2026-03-05 14:08:40] 2026-03-05 13:07:38,456 | INFO     | --- collectZombieJob: --- 10, [7977]
[2026-03-05 14:08:40] 2026-03-05 13:07:38,457 | INFO     | zombie collector waiting for pid 7977
[2026-03-05 14:08:40] 2026-03-05 13:07:38,457 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 14:08:40] 2026-03-05 13:07:38,457 | INFO     | collected zombie processes
[2026-03-05 14:08:40] 2026-03-05 13:07:38,457 | INFO     | will attempt to kill all subprocesses of pid=7977
[2026-03-05 14:08:40] 2026-03-05 13:07:38,517 | INFO     | process IDs to be killed: [7977] (in reverse order)
[2026-03-05 14:08:40] 2026-03-05 13:07:38,576 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 14:08:40] 2026-03-05 13:07:38,576 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 14:08:40] 2026-03-05 13:07:38,578 | INFO     | did not find any defunct processes belonging to 7977
[2026-03-05 14:08:40] 2026-03-05 13:07:38,579 | INFO     | did not find any defunct processes belonging to 7977
[2026-03-05 14:08:40] 2026-03-05 13:07:38,580 | INFO     | ready for new job
[2026-03-05 14:08:40] 2026-03-05 13:07:38,580 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 14:08:40] 2026-03-05 13:07:38,582 | INFO     | **************************************
[2026-03-05 14:08:40] 2026-03-05 13:07:38,582 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 14:08:40] 2026-03-05 13:07:38,582 | INFO     | **************************************
[2026-03-05 14:08:40] 2026-03-05 13:07:38,582 | INFO     | 
[2026-03-05 14:08:40] 2026-03-05 13:07:38,583 | INFO     | pilot is running in a VM
[2026-03-05 14:08:40] 2026-03-05 13:07:38,583 | INFO     | architecture information:
[2026-03-05 14:08:40] 2026-03-05 13:07:38,584 | INFO     | executing command: cat /etc/os-release
[2026-03-05 14:08:40] 2026-03-05 13:07:38,605 | INFO     | cat /etc/os-release:
[2026-03-05 14:08:40] NAME="CentOS Linux"
[2026-03-05 14:08:40] VERSION="7 (Core)"
[2026-03-05 14:08:40] ID="centos"
[2026-03-05 14:08:40] ID_LIKE="rhel fedora"
[2026-03-05 14:08:40] VERSION_ID="7"
[2026-03-05 14:08:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 14:08:40] ANSI_COLOR="0;31"
[2026-03-05 14:08:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 14:08:40] HOME_URL="https://www.centos.org/"
[2026-03-05 14:08:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 14:08:40] 
[2026-03-05 14:08:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 14:08:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 14:08:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 14:08:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 14:08:40] 
[2026-03-05 14:08:40] 2026-03-05 13:07:38,605 | INFO     | **************************************
[2026-03-05 14:08:40] 2026-03-05 13:07:39,108 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2026-03-05 14:08:40] 2026-03-05 13:07:39,134 | INFO     | sufficient remaining disk space (494894317568 B)
[2026-03-05 14:08:40] 2026-03-05 13:07:39,134 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 14:08:40] 2026-03-05 13:07:39,134 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 14:08:40] 2026-03-05 13:07:39,135 | INFO     | update_server=False
[2026-03-05 14:08:40] 2026-03-05 13:07:39,135 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 14:08:40] 2026-03-05 13:07:39,135 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 14:08:40] 2026-03-05 13:07:39,135 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 14:08:40] 2026-03-05 13:07:39,142 | INFO     | all data control threads have been joined
[2026-03-05 14:08:40] 2026-03-05 13:07:39,495 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 14:08:40] 2026-03-05 13:07:39,704 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 14:08:40] 2026-03-05 13:07:39,704 | INFO     | aborting loop
[2026-03-05 14:08:40] 2026-03-05 13:07:40,136 | INFO     | [job] retrieve thread has finished
[2026-03-05 14:08:40] 2026-03-05 13:07:40,136 | INFO     | [job] queue monitor thread has finished
[2026-03-05 14:08:40] 2026-03-05 13:07:40,148 | INFO     | [data] control thread has finished
[2026-03-05 14:08:40] 2026-03-05 13:07:40,162 | INFO     | all job control threads have been joined
[2026-03-05 14:08:40] 2026-03-05 13:07:40,198 | INFO     | [data] copytool_in thread has finished
[2026-03-05 14:08:40] 2026-03-05 13:07:40,329 | INFO     | [job] validate thread has finished
[2026-03-05 14:08:40] 2026-03-05 13:07:40,336 | INFO     | all payload control threads have been joined
[2026-03-05 14:08:40] 2026-03-05 13:07:40,704 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 14:08:40] 2026-03-05 13:07:40,710 | INFO     | [job] job monitor thread has finished
[2026-03-05 14:08:40] 2026-03-05 13:07:41,140 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 14:08:40] 2026-03-05 13:07:41,168 | INFO     | [job] control thread has finished
[2026-03-05 14:08:40] 2026-03-05 13:07:41,227 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 14:08:40] 2026-03-05 13:07:41,328 | INFO     | [payload] validate_post thread has finished
[2026-03-05 14:08:40] 2026-03-05 13:07:41,342 | INFO     | [payload] control thread has finished
[2026-03-05 14:08:40] 2026-03-05 13:07:41,501 | INFO     | [data] copytool_out thread has finished
[2026-03-05 14:08:40] 2026-03-05 13:07:41,584 | INFO     | [payload] failed_post thread has finished
[2026-03-05 14:08:40] 2026-03-05 13:07:43,146 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 14:08:40] 2026-03-05 13:07:49,997 | INFO     | job.realtimelogging is not enabled
[2026-03-05 14:08:40] 2026-03-05 13:07:51,002 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 14:08:40] 2026-03-05 13:08:08,536 | INFO     | 13829s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-03-05 14:08:40] 2026-03-05 13:08:09,614 | INFO     | PID=3521 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-05 14:08:40] 2026-03-05 13:08:09,614 | INFO     | .. there are 2 such processes running
[2026-03-05 14:08:40] 2026-03-05 13:08:09,614 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 14:08:40] 2026-03-05 13:08:09,614 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 14:08:40] 2026-03-05 13:08:09,614 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 14:08:40] 2026-03-05 13:08:34,669 | INFO     | [monitor] cgroup control has ended
[2026-03-05 14:08:40] 2026-03-05 13:08:35,234 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140628000577344)>', '<ExcThread(monitor, started 140627421423360)>']
[2026-03-05 14:08:40] 2026-03-05 13:08:35,728 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 14:08:40] 2026-03-05 13:08:35,729 | INFO     | [monitor] control thread has ended
[2026-03-05 14:08:40] 2026-03-05 13:08:40,259 | INFO     | all workflow threads have been joined
[2026-03-05 14:08:40] 2026-03-05 13:08:40,260 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 14:08:40] 2026-03-05 13:08:40,260 | INFO     | traces error code: 0
[2026-03-05 14:08:40] 2026-03-05 13:08:40,260 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 14:08:40] 2026-03-05 13:08:40,403 [wrapper] ==== pilot stdout END ====
[2026-03-05 14:08:40] 2026-03-05 13:08:40,417 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 14:08:40] 2026-03-05 13:08:40,424 [wrapper] pilotpid: 3521
[2026-03-05 14:08:40] 2026-03-05 13:08:40,429 [wrapper] Pilot exit status: 0
[2026-03-05 14:08:40] 2026-03-05 13:08:40,449 [wrapper] pandaids: 7038522422
[2026-03-05 14:08:40] 2026-03-05 13:08:40,486 [wrapper] cleanup supervisor_pilot 14840 3522
[2026-03-05 14:08:40] 2026-03-05 13:08:40,492 [wrapper] Test setup, not cleaning
[2026-03-05 14:08:40] 2026-03-05 13:08:40,500 [wrapper] apfmon messages muted
[2026-03-05 14:08:40] 2026-03-05 13:08:40,504 [wrapper] ==== wrapper stdout END ====
[2026-03-05 14:08:40] 2026-03-05 13:08:40,509 [wrapper] ==== wrapper stderr END ====
[2026-03-05 14:08:40]  *** Error codes and diagnostics ***
[2026-03-05 14:08:40]     "exeErrorCode": 0,
[2026-03-05 14:08:40]     "exeErrorDiag": "",
[2026-03-05 14:08:40]     "pilotErrorCode": 0,
[2026-03-05 14:08:40]     "pilotErrorDiag": "",
[2026-03-05 14:08:40]  *** Listing of results directory ***
[2026-03-05 14:08:40] total 621012
[2026-03-05 14:08:40] -rw-r--r--. 1 boinc boinc    584627 Mar  4 22:47 pilot3.tar.gz
[2026-03-05 14:08:40] -rwx------. 1 boinc boinc     36322 Mar  4 22:50 runpilot2-wrapper.sh
[2026-03-05 14:08:40] -rw-r--r--. 1 boinc boinc      5111 Mar  4 22:51 queuedata.json
[2026-03-05 14:08:40] -rw-r--r--. 1 boinc boinc       100 Mar  5 10:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 14:08:40] -rwxr-xr-x. 1 boinc boinc      7986 Mar  5 10:12 run_atlas
[2026-03-05 14:08:40] -rw-r--r--. 1 boinc boinc       105 Mar  5 10:12 job.xml
[2026-03-05 14:08:40] -rw-r--r--. 1 boinc boinc      6390 Mar  5 10:12 init_data.xml
[2026-03-05 14:08:40] -rw-r--r--. 2 boinc boinc 438203585 Mar  5 10:12 EVNT.46701403._002067.pool.root.1
[2026-03-05 14:08:40] -rw-r--r--. 2 boinc boinc     15845 Mar  5 10:12 start_atlas.sh
[2026-03-05 14:08:40] drwxrwx--x. 2 boinc boinc        68 Mar  5 10:12 shared
[2026-03-05 14:08:40] -rw-r--r--. 2 boinc boinc    597958 Mar  5 10:12 input.tar.gz
[2026-03-05 14:08:40] -rw-r--r--. 1 boinc boinc         0 Mar  5 10:12 boinc_lockfile
[2026-03-05 14:08:40] -rw-r--r--. 1 boinc boinc      2568 Mar  5 10:12 pandaJob.out
[2026-03-05 14:08:40] -rw-------. 1 boinc boinc       415 Mar  5 10:19 workernode_map.json
[2026-03-05 14:08:40] -rw-------. 1 boinc boinc    998505 Mar  5 10:19 agis_schedconf.cvmfs.json
[2026-03-05 14:08:40] drwx------. 5 boinc boinc      4096 Mar  5 10:19 pilot3
[2026-03-05 14:08:40] -rw-------. 1 boinc boinc 188993635 Mar  5 14:06 HITS.48955015._001226.pool.root.1
[2026-03-05 14:08:40] -rw-r--r--. 1 boinc boinc       531 Mar  5 14:07 boinc_task_state.xml
[2026-03-05 14:08:40] -rw-------. 1 boinc boinc      1014 Mar  5 14:07 memory_monitor_summary.json
[2026-03-05 14:08:40] -rw-------. 1 boinc boinc   1521291 Mar  5 14:07 agis_ddmendpoints.agis.ALL.json
[2026-03-05 14:08:40] -rw-------. 1 boinc boinc    470881 Mar  5 14:07 log.48955015._001226.job.log.tgz.1
[2026-03-05 14:08:40] -rw-------. 1 boinc boinc      6340 Mar  5 14:07 heartbeat.json
[2026-03-05 14:08:40] -rw-------. 1 boinc boinc        95 Mar  5 14:07 pilot_heartbeat.json
[2026-03-05 14:08:40] -rw-r--r--. 1 boinc boinc        28 Mar  5 14:08 wrapper_checkpoint.txt
[2026-03-05 14:08:40] -rw-r--r--. 1 boinc boinc      8192 Mar  5 14:08 boinc_mmap_file
[2026-03-05 14:08:40] -rw-------. 1 boinc boinc      5067 Mar  5 14:08 pilotlog.txt
[2026-03-05 14:08:40] -rw-------. 1 boinc boinc   1928150 Mar  5 14:08 log.48955015._001226.job.log.1
[2026-03-05 14:08:40] -rw-------. 1 boinc boinc       357 Mar  5 14:08 output.list
[2026-03-05 14:08:40] -rw-r--r--. 1 boinc boinc       620 Mar  5 14:08 runtime_log
[2026-03-05 14:08:40] -rw-------. 1 boinc boinc   2416640 Mar  5 14:08 result.tar.gz
[2026-03-05 14:08:40] -rw-r--r--. 1 boinc boinc      8816 Mar  5 14:08 runtime_log.err
[2026-03-05 14:08:40] -rw-------. 1 boinc boinc       656 Mar  5 14:08 7QTNDmAI9H9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmJ4LLDmbJdBmm.diag
[2026-03-05 14:08:40] -rw-r--r--. 1 boinc boinc     20705 Mar  5 14:08 stderr.txt
[2026-03-05 14:08:40] HITS file was successfully produced:
[2026-03-05 14:08:40] -rw-------. 1 boinc boinc 188993635 Mar  5 14:06 shared/HITS.pool.root.1
[2026-03-05 14:08:40]  *** Contents of shared directory: ***
[2026-03-05 14:08:40] total 615464
[2026-03-05 14:08:40] -rw-r--r--. 2 boinc boinc 438203585 Mar  5 10:12 ATLAS.root_0
[2026-03-05 14:08:40] -rw-r--r--. 2 boinc boinc     15845 Mar  5 10:12 start_atlas.sh
[2026-03-05 14:08:40] -rw-r--r--. 2 boinc boinc    597958 Mar  5 10:12 input.tar.gz
[2026-03-05 14:08:40] -rw-------. 1 boinc boinc 188993635 Mar  5 14:06 HITS.pool.root.1
[2026-03-05 14:08:40] -rw-------. 1 boinc boinc   2416640 Mar  5 14:08 result.tar.gz
14:08:42 (31914): run_atlas exited; CPU time 50652.502401
14:08:42 (31914): called boinc_finish(0)

</stderr_txt>
]]>

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