Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:23:40 (1373): wrapper (7.7.26015): starting
01:23:40 (1373): wrapper: running run_atlas (--nthreads 8)
[2026-03-05 01:23:40] Arguments: --nthreads 8
[2026-03-05 01:23:40] Threads: 8
[2026-03-05 01:23:40] Checking for CVMFS
[2026-03-05 01:23:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-05 01:23:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-05 01:23:40] Running cvmfs_config stat atlas.cern.ch
[2026-03-05 01:23:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-05 01:23:41] 2.11.0.0 5737 923 57244 156897 2 49 1833132 4096000 917 130560 0 469487 98.605 695827 350 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-05 01:23:41] CVMFS is ok
[2026-03-05 01:23:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-05 01:23:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-05 01:23:41] Further information can be found at the LHC@home message board.
[2026-03-05 01:23:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 01:23:41] Checking for apptainer binary...
[2026-03-05 01:23:41] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-05 01:23:41] apptainer is not installed, using version from CVMFS
[2026-03-05 01:23:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 01:23:41] WARNING: Environment variable TMPDIR already has value [/tmp/job_11254584/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node421
[2026-03-05 01:23:41] apptainer works
[2026-03-05 01:23:45] Set ATHENA_PROC_NUMBER=8
[2026-03-05 01:23:45] Set ATHENA_CORE_NUMBER=8
[2026-03-05 01:23:45] Starting ATLAS job with PandaID=7040372321
[2026-03-05 01:23:45] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11254584/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 02:16:03]  *** The last 200 lines of the pilot log: ***
[2026-03-05 02:16:03]  filetype=log
[2026-03-05 02:16:03]  guid=55ba4a7c-28ee-4d47-bc79-fdb250c36fb2
[2026-03-05 02:16:03]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-05 02:16:03]  is_altstaged=None
[2026-03-05 02:16:03]  is_tar=False
[2026-03-05 02:16:03]  lfn=log.48973452._000319.job.log.tgz.1
[2026-03-05 02:16:03]  mtime=0
[2026-03-05 02:16:03]  protocol_id=None
[2026-03-05 02:16:03]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-05 02:16:03]  replicas=None
[2026-03-05 02:16:03]  scope=mc23_13p6TeV
[2026-03-05 02:16:03]  status=None
[2026-03-05 02:16:03]  status_code=0
[2026-03-05 02:16:03]  storage_token=
[2026-03-05 02:16:03]  surl=/tmp/job_11254584/atlas/pilot/slots/0/PanDA_Pilot-7040372321/log.48973452._000319.job.log.tgz.1
[2026-03-05 02:16:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/79/49/log.48973452._000319.job.log.tgz.1
[2026-03-05 02:16:03]  workdir=None
[2026-03-05 02:16:03] ]
[2026-03-05 02:16:03] 2026-03-05 01:15:16,772 | INFO     | transferring file log.48973452._000319.job.log.tgz.1 from /tmp/job_11254584/atlas/pilot/slots/0/PanDA_Pilot-7040372321/log.48973452._000319.job.log.tgz.1 to /tmp/j
[2026-03-05 02:16:03] 2026-03-05 01:15:16,772 | INFO     | executing command: /usr/bin/env mv /tmp/job_11254584/atlas/pilot/slots/0/PanDA_Pilot-7040372321/log.48973452._000319.job.log.tgz.1 /tmp/job_11254584/atlas/pilot/sl
[2026-03-05 02:16:03] 2026-03-05 01:15:16,779 | INFO     | adding to output.list: log.48973452._000319.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/79/49/log.48973452._000319.job.log.tg
[2026-03-05 02:16:03] 2026-03-05 01:15:16,780 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-05 02:16:03] 2026-03-05 01:15:16,780 | INFO     | summary of transferred files:
[2026-03-05 02:16:03] 2026-03-05 01:15:16,780 | INFO     |  -- lfn=log.48973452._000319.job.log.tgz.1, status_code=0, status=transferred
[2026-03-05 02:16:03] 2026-03-05 01:15:16,780 | INFO     | stage-out finished correctly
[2026-03-05 02:16:03] 2026-03-05 01:15:16,829 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-05 02:16:03] 2026-03-05 01:15:16,970 | INFO     | job 7040372321 has state=finished
[2026-03-05 02:16:03] 2026-03-05 01:15:16,970 | INFO     | preparing for final server update for job 7040372321 in state='finished'
[2026-03-05 02:16:03] 2026-03-05 01:15:16,970 | INFO     | reading metadata from: /tmp/job_11254584/atlas/pilot/slots/0/PanDA_Pilot-7040372321/jobReport.json
[2026-03-05 02:16:03] 2026-03-05 01:15:16,972 | INFO     | added worker_node to metadata from /tmp/job_11254584/atlas/pilot/slots/0/workernode_map.json
[2026-03-05 02:16:03] 2026-03-05 01:15:16,972 | INFO     | this job has now completed (state=finished)
[2026-03-05 02:16:03] 2026-03-05 01:15:16,972 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-05 02:16:03] 2026-03-05 01:15:16,972 | INFO     | log transfer has been attempted: DONE
[2026-03-05 02:16:03] 2026-03-05 01:15:16,972 | INFO     | job 7040372321 has finished - writing final server update
[2026-03-05 02:16:03] 2026-03-05 01:15:16,972 | INFO     | total number of processed events: 400 (read)
[2026-03-05 02:16:03] 2026-03-05 01:15:16,989 | INFO     | using path: /tmp/job_11254584/atlas/pilot/slots/0/PanDA_Pilot-7040372321/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 02:16:03] 2026-03-05 01:15:16,989 | INFO     | extracted standard info from prmon json
[2026-03-05 02:16:03] 2026-03-05 01:15:16,989 | INFO     | extracted standard memory fields from prmon json
[2026-03-05 02:16:03] 2026-03-05 01:15:16,990 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-05 02:16:03] 2026-03-05 01:15:16,990 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-05 02:16:03] 2026-03-05 01:15:16,990 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-05 02:16:03] 2026-03-05 01:15:16,990 | INFO     | fitting pss+swap vs Time
[2026-03-05 02:16:03] 2026-03-05 01:15:16,990 | INFO     | sum of square deviations: 26400495.0
[2026-03-05 02:16:03] 2026-03-05 01:15:16,991 | INFO     | sum of deviations: 513256653.5
[2026-03-05 02:16:03] 2026-03-05 01:15:16,991 | INFO     | mean x: 1772671863.5
[2026-03-05 02:16:03] 2026-03-05 01:15:16,991 | INFO     | mean y: 2928585.25
[2026-03-05 02:16:03] 2026-03-05 01:15:16,991 | INFO     | intersect: -34459896010.031975
[2026-03-05 02:16:03] 2026-03-05 01:15:16,991 | INFO     | chi2: 0.0008211574009773523
[2026-03-05 02:16:03] 2026-03-05 01:15:16,991 | INFO     | current memory leak: 19.44 B/s (using 44 data points, chi2=0.00)
[2026-03-05 02:16:03] 2026-03-05 01:15:16,991 | INFO     | could have reported an average CPU frequency of 2489 MHz (5 samples)
[2026-03-05 02:16:03] 2026-03-05 01:15:16,991 | INFO     | ..............................
[2026-03-05 02:16:03] 2026-03-05 01:15:16,991 | INFO     | . Timing measurements:
[2026-03-05 02:16:03] 2026-03-05 01:15:16,991 | INFO     | . get job = 0 s
[2026-03-05 02:16:03] 2026-03-05 01:15:16,991 | INFO     | . initial setup = 2 s
[2026-03-05 02:16:03] 2026-03-05 01:15:16,991 | INFO     | . payload setup = 2 s
[2026-03-05 02:16:03] 2026-03-05 01:15:16,991 | INFO     | . stage-in = 0 s
[2026-03-05 02:16:03] 2026-03-05 01:15:16,991 | INFO     | . payload execution = 3068 s
[2026-03-05 02:16:03] 2026-03-05 01:15:16,991 | INFO     | . stage-out = 0 s
[2026-03-05 02:16:03] 2026-03-05 01:15:16,991 | INFO     | . log creation = 0 s
[2026-03-05 02:16:03] 2026-03-05 01:15:16,991 | INFO     | ..............................
[2026-03-05 02:16:03] 2026-03-05 01:15:17,493 | INFO     | 
[2026-03-05 02:16:03] 2026-03-05 01:15:17,493 | INFO     | job summary report
[2026-03-05 02:16:03] 2026-03-05 01:15:17,493 | INFO     | --------------------------------------------------
[2026-03-05 02:16:03] 2026-03-05 01:15:17,493 | INFO     | PanDA job id: 7040372321
[2026-03-05 02:16:03] 2026-03-05 01:15:17,494 | INFO     | task id: 48973452
[2026-03-05 02:16:03] 2026-03-05 01:15:17,494 | INFO     | errors: (none)
[2026-03-05 02:16:03] 2026-03-05 01:15:17,494 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-05 02:16:03] 2026-03-05 01:15:17,494 | INFO     | pilot state: finished 
[2026-03-05 02:16:03] 2026-03-05 01:15:17,494 | INFO     | transexitcode: 0
[2026-03-05 02:16:03] 2026-03-05 01:15:17,494 | INFO     | exeerrorcode: 0
[2026-03-05 02:16:03] 2026-03-05 01:15:17,494 | INFO     | exeerrordiag: 
[2026-03-05 02:16:03] 2026-03-05 01:15:17,494 | INFO     | exitcode: 0
[2026-03-05 02:16:03] 2026-03-05 01:15:17,494 | INFO     | exitmsg: OK
[2026-03-05 02:16:03] 2026-03-05 01:15:17,494 | INFO     | cpuconsumptiontime: 22333 s
[2026-03-05 02:16:03] 2026-03-05 01:15:17,494 | INFO     | nevents: 400
[2026-03-05 02:16:03] 2026-03-05 01:15:17,494 | INFO     | neventsw: 0
[2026-03-05 02:16:03] 2026-03-05 01:15:17,494 | INFO     | pid: 12146
[2026-03-05 02:16:03] 2026-03-05 01:15:17,494 | INFO     | pgrp: 12146
[2026-03-05 02:16:03] 2026-03-05 01:15:17,494 | INFO     | corecount: 8
[2026-03-05 02:16:03] 2026-03-05 01:15:17,494 | INFO     | event service: False
[2026-03-05 02:16:03] 2026-03-05 01:15:17,494 | INFO     | sizes: {0: 2295968, 11: 2295968, 3073: 2330587, 3074: 2330813}
[2026-03-05 02:16:03] 2026-03-05 01:15:17,494 | INFO     | --------------------------------------------------
[2026-03-05 02:16:03] 2026-03-05 01:15:17,494 | INFO     | 
[2026-03-05 02:16:03] 2026-03-05 01:15:17,494 | INFO     | executing command: ls -lF /tmp/job_11254584/atlas/pilot/slots/0
[2026-03-05 02:16:03] 2026-03-05 01:15:17,503 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-05 02:16:03] 2026-03-05 01:15:17,503 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-05 02:16:03] 2026-03-05 01:15:17,503 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-05 02:16:03] 2026-03-05 01:15:17,503 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-05 02:16:03] 2026-03-05 01:15:17,503 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-05 02:16:03] 2026-03-05 01:15:17,503 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-05 02:16:03] 2026-03-05 01:15:17,503 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-05 02:16:03] 2026-03-05 01:15:17,503 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-05 02:16:03] 2026-03-05 01:15:17,503 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-05 02:16:03] 2026-03-05 01:15:17,503 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-05 02:16:03] 2026-03-05 01:15:17,503 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-05 02:16:03] 2026-03-05 01:15:17,503 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-05 02:16:03] 2026-03-05 01:15:17,503 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-05 02:16:03] 2026-03-05 01:15:17,503 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-05 02:16:03] 2026-03-05 01:15:17,503 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-05 02:16:03] 2026-03-05 01:15:17,503 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-05 02:16:03] 2026-03-05 01:15:17,503 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-05 02:16:03] 2026-03-05 01:15:17,503 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-05 02:16:03] 2026-03-05 01:15:17,503 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-05 02:16:03] 2026-03-05 01:15:17,503 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-05 02:16:03] 2026-03-05 01:15:17,504 | INFO     | job 7040372321 has completed (purged errors)
[2026-03-05 02:16:03] 2026-03-05 01:15:17,504 | INFO     | overall cleanup function is called
[2026-03-05 02:16:03] 2026-03-05 01:15:18,509 | INFO     | --- collectZombieJob: --- 10, [12146]
[2026-03-05 02:16:03] 2026-03-05 01:15:18,510 | INFO     | zombie collector waiting for pid 12146
[2026-03-05 02:16:03] 2026-03-05 01:15:18,510 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 02:16:03] 2026-03-05 01:15:18,510 | INFO     | collected zombie processes
[2026-03-05 02:16:03] 2026-03-05 01:15:18,510 | INFO     | will attempt to kill all subprocesses of pid=12146
[2026-03-05 02:16:03] 2026-03-05 01:15:18,599 | INFO     | process IDs to be killed: [12146] (in reverse order)
[2026-03-05 02:16:03] 2026-03-05 01:15:18,627 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 02:16:03] 2026-03-05 01:15:18,627 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 02:16:03] 2026-03-05 01:15:18,631 | INFO     | did not find any defunct processes belonging to 12146
[2026-03-05 02:16:03] 2026-03-05 01:15:18,633 | INFO     | did not find any defunct processes belonging to 12146
[2026-03-05 02:16:03] 2026-03-05 01:15:18,633 | INFO     | ready for new job
[2026-03-05 02:16:03] 2026-03-05 01:15:18,633 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 02:16:03] 2026-03-05 01:15:18,634 | INFO     | **************************************
[2026-03-05 02:16:03] 2026-03-05 01:15:18,634 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 02:16:03] 2026-03-05 01:15:18,634 | INFO     | **************************************
[2026-03-05 02:16:03] 2026-03-05 01:15:18,634 | INFO     | 
[2026-03-05 02:16:03] 2026-03-05 01:15:18,648 | INFO     | architecture information:
[2026-03-05 02:16:03] 2026-03-05 01:15:18,648 | INFO     | executing command: cat /etc/os-release
[2026-03-05 02:16:03] 2026-03-05 01:15:18,653 | INFO     | cat /etc/os-release:
[2026-03-05 02:16:03] NAME="CentOS Linux"
[2026-03-05 02:16:03] VERSION="7 (Core)"
[2026-03-05 02:16:03] ID="centos"
[2026-03-05 02:16:03] ID_LIKE="rhel fedora"
[2026-03-05 02:16:03] VERSION_ID="7"
[2026-03-05 02:16:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 02:16:03] ANSI_COLOR="0;31"
[2026-03-05 02:16:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 02:16:03] HOME_URL="https://www.centos.org/"
[2026-03-05 02:16:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 02:16:03] 
[2026-03-05 02:16:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 02:16:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 02:16:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 02:16:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 02:16:03] 
[2026-03-05 02:16:03] 2026-03-05 01:15:18,653 | INFO     | **************************************
[2026-03-05 02:16:03] 2026-03-05 01:15:19,156 | INFO     | executing command: df -mP /tmp/job_11254584/atlas/pilot/slots/0
[2026-03-05 02:16:03] 2026-03-05 01:15:19,162 | INFO     | sufficient remaining disk space (229284773888 B)
[2026-03-05 02:16:03] 2026-03-05 01:15:19,162 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 02:16:03] 2026-03-05 01:15:19,162 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 02:16:03] 2026-03-05 01:15:19,162 | INFO     | update_server=False
[2026-03-05 02:16:03] 2026-03-05 01:15:19,162 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 02:16:03] 2026-03-05 01:15:19,162 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 02:16:03] 2026-03-05 01:15:19,734 | INFO     | all data control threads have been joined
[2026-03-05 02:16:03] 2026-03-05 01:15:19,834 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 02:16:03] 2026-03-05 01:15:20,090 | INFO     | all job control threads have been joined
[2026-03-05 02:16:03] 2026-03-05 01:15:20,167 | INFO     | [job] retrieve thread has finished
[2026-03-05 02:16:03] 2026-03-05 01:15:20,349 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 02:16:03] 2026-03-05 01:15:20,495 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 02:16:03] 2026-03-05 01:15:20,495 | INFO     | [job] validate thread has finished
[2026-03-05 02:16:03] 2026-03-05 01:15:20,507 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 02:16:03] 2026-03-05 01:15:20,542 | INFO     | job.realtimelogging is not enabled
[2026-03-05 02:16:03] 2026-03-05 01:15:20,596 | INFO     | [payload] validate_post thread has finished
[2026-03-05 02:16:03] 2026-03-05 01:15:20,637 | INFO     | all payload control threads have been joined
[2026-03-05 02:16:03] 2026-03-05 01:15:20,739 | INFO     | [data] control thread has finished
[2026-03-05 02:16:03] 2026-03-05 01:15:20,998 | INFO     | [data] copytool_in thread has finished
[2026-03-05 02:16:03] 2026-03-05 01:15:21,095 | INFO     | [job] control thread has finished
[2026-03-05 02:16:03] 2026-03-05 01:15:21,316 | INFO     | [payload] failed_post thread has finished
[2026-03-05 02:16:03] 2026-03-05 01:15:21,547 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 02:16:03] 2026-03-05 01:15:21,642 | INFO     | [payload] control thread has finished
[2026-03-05 02:16:03] 2026-03-05 01:15:21,840 | INFO     | [data] copytool_out thread has finished
[2026-03-05 02:16:03] 2026-03-05 01:15:22,049 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 02:16:03] 2026-03-05 01:15:22,132 | WARNING  | process 12146 can no longer be monitored (due to stat problems) - aborting
[2026-03-05 02:16:03] 2026-03-05 01:15:22,206 | INFO     | using path: /tmp/job_11254584/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 02:16:03] 2026-03-05 01:15:22,290 | INFO     | number of running child processes to parent process 12146: 1
[2026-03-05 02:16:03] 2026-03-05 01:15:22,290 | INFO     | maximum number of monitored processes: 6
[2026-03-05 02:16:03] 2026-03-05 01:15:22,290 | INFO     | aborting job monitoring since job object (job id=7040372321) has expired
[2026-03-05 02:16:03] 2026-03-05 01:15:22,290 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 02:16:03] 2026-03-05 01:15:22,291 | INFO     | will abort loop
[2026-03-05 02:16:03] 2026-03-05 01:15:23,055 | INFO     | [job] queue monitor thread has finished
[2026-03-05 02:16:03] 2026-03-05 01:15:23,167 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 02:16:03] 2026-03-05 01:15:23,296 | INFO     | [job] job monitor thread has finished
[2026-03-05 02:16:03] 2026-03-05 01:15:49,744 | INFO     | PID=6217 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-05 02:16:03] 2026-03-05 01:15:49,744 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 02:16:03] 2026-03-05 01:15:49,744 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 02:16:03] 2026-03-05 01:15:49,744 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 02:16:03] 2026-03-05 01:15:56,369 | INFO     | [monitor] cgroup control has ended
[2026-03-05 02:16:03] 2026-03-05 01:15:58,112 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456061073152)>']
[2026-03-05 02:16:03] 2026-03-05 01:15:58,790 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 02:16:03] 2026-03-05 01:15:58,790 | INFO     | [monitor] control thread has ended
[2026-03-05 02:16:03] 2026-03-05 01:16:03,137 | INFO     | all workflow threads have been joined
[2026-03-05 02:16:03] 2026-03-05 01:16:03,137 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 02:16:03] 2026-03-05 01:16:03,137 | INFO     | traces error code: 0
[2026-03-05 02:16:03] 2026-03-05 01:16:03,137 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 02:16:03] 2026-03-05 01:16:03,189 [wrapper] ==== pilot stdout END ====
[2026-03-05 02:16:03] 2026-03-05 01:16:03,190 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 02:16:03] 2026-03-05 01:16:03,191 [wrapper] pilotpid: 6217
[2026-03-05 02:16:03] 2026-03-05 01:16:03,192 [wrapper] Pilot exit status: 0
[2026-03-05 02:16:03] 2026-03-05 01:16:03,196 [wrapper] pandaids: 7040372321
[2026-03-05 02:16:03] 2026-03-05 01:16:03,216 [wrapper] cleanup supervisor_pilot 25847 6218
[2026-03-05 02:16:03] 2026-03-05 01:16:03,217 [wrapper] Test setup, not cleaning
[2026-03-05 02:16:03] 2026-03-05 01:16:03,218 [wrapper] apfmon messages muted
[2026-03-05 02:16:03] 2026-03-05 01:16:03,219 [wrapper] ==== wrapper stdout END ====
[2026-03-05 02:16:03] 2026-03-05 01:16:03,220 [wrapper] ==== wrapper stderr END ====
[2026-03-05 02:16:03]  *** Error codes and diagnostics ***
[2026-03-05 02:16:03]     "exeErrorCode": 0,
[2026-03-05 02:16:03]     "exeErrorDiag": "",
[2026-03-05 02:16:03]     "pilotErrorCode": 0,
[2026-03-05 02:16:03]     "pilotErrorDiag": "",
[2026-03-05 02:16:03]  *** Listing of results directory ***
[2026-03-05 02:16:03] total 508220
[2026-03-05 02:16:03] -rw------- 1 mf493845 unix-user    584627 Mar  4 18:22 pilot3.tar.gz
[2026-03-05 02:16:03] -rw------- 1 mf493845 unix-user      5111 Mar  4 18:25 queuedata.json
[2026-03-05 02:16:03] -rwx------ 1 mf493845 unix-user     36322 Mar  4 18:25 runpilot2-wrapper.sh
[2026-03-05 02:16:03] -rw------- 1 mf493845 unix-user       100 Mar  5 00:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 02:16:03] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar  5 00:07 run_atlas
[2026-03-05 02:16:03] -rw------- 1 mf493845 unix-user       105 Mar  5 00:07 job.xml
[2026-03-05 02:16:03] -rw-r--r-- 2 mf493845 unix-user 300011313 Mar  5 01:23 EVNT.48717224._000013.pool.root.1
[2026-03-05 02:16:03] -rw-r--r-- 2 mf493845 unix-user     15845 Mar  5 01:23 start_atlas.sh
[2026-03-05 02:16:03] drwxrwx--x 2 mf493845 unix-user       100 Mar  5 01:23 shared
[2026-03-05 02:16:03] -rw-r--r-- 2 mf493845 unix-user    597956 Mar  5 01:23 input.tar.gz
[2026-03-05 02:16:03] -rw------- 1 mf493845 unix-user      6391 Mar  5 01:23 init_data.xml
[2026-03-05 02:16:03] -rw------- 1 mf493845 unix-user         0 Mar  5 01:23 boinc_setup_complete
[2026-03-05 02:16:03] -rw------- 1 mf493845 unix-user      8192 Mar  5 01:23 boinc_mmap_file
[2026-03-05 02:16:03] -rw------- 1 mf493845 unix-user         0 Mar  5 01:23 boinc_lockfile
[2026-03-05 02:16:03] -rw------- 1 mf493845 unix-user      2593 Mar  5 01:23 pandaJob.out
[2026-03-05 02:16:03] -rw------- 1 mf493845 unix-user    997749 Mar  5 01:23 agis_schedconf.cvmfs.json
[2026-03-05 02:16:03] -rw------- 1 mf493845 unix-user   1521291 Mar  5 01:23 agis_ddmendpoints.agis.ALL.json
[2026-03-05 02:16:03] -rw------- 1 mf493845 unix-user       412 Mar  5 01:23 workernode_map.json
[2026-03-05 02:16:03] drwx------ 5 mf493845 unix-user       440 Mar  5 01:23 pilot3
[2026-03-05 02:16:03] -rw------- 1 mf493845 unix-user 214909985 Mar  5 02:14 HITS.48973452._000319.pool.root.1
[2026-03-05 02:16:03] -rw------- 1 mf493845 unix-user      1026 Mar  5 02:15 memory_monitor_summary.json
[2026-03-05 02:16:03] -rw------- 1 mf493845 unix-user    309300 Mar  5 02:15 log.48973452._000319.job.log.tgz.1
[2026-03-05 02:16:03] -rw------- 1 mf493845 unix-user      6299 Mar  5 02:15 heartbeat.json
[2026-03-05 02:16:03] -rw------- 1 mf493845 unix-user        95 Mar  5 02:15 pilot_heartbeat.json
[2026-03-05 02:16:03] -rw------- 1 mf493845 unix-user      5359 Mar  5 02:16 pilotlog.txt
[2026-03-05 02:16:03] -rw------- 1 mf493845 unix-user    486384 Mar  5 02:16 log.48973452._000319.job.log.1
[2026-03-05 02:16:03] -rw------- 1 mf493845 unix-user       357 Mar  5 02:16 output.list
[2026-03-05 02:16:03] -rw------- 1 mf493845 unix-user       620 Mar  5 02:16 runtime_log
[2026-03-05 02:16:03] -rw------- 1 mf493845 unix-user    808960 Mar  5 02:16 result.tar.gz
[2026-03-05 02:16:03] -rw------- 1 mf493845 unix-user       644 Mar  5 02:16 x1eNDmj94H9n9Rq4apOajLDm4fhM0noT9bVooX4SDmpAJLDmwLcKpn.diag
[2026-03-05 02:16:03] -rw------- 1 mf493845 unix-user      9219 Mar  5 02:16 runtime_log.err
[2026-03-05 02:16:03] -rw------- 1 mf493845 unix-user     21770 Mar  5 02:16 stderr.txt
[2026-03-05 02:16:03] HITS file was successfully produced:
[2026-03-05 02:16:03] -rw------- 1 mf493845 unix-user 214909985 Mar  5 02:14 shared/HITS.pool.root.1
[2026-03-05 02:16:03]  *** Contents of shared directory: ***
[2026-03-05 02:16:03] total 504248
[2026-03-05 02:16:03] -rw-r--r-- 2 mf493845 unix-user 300011313 Mar  5 01:23 ATLAS.root_0
[2026-03-05 02:16:03] -rw-r--r-- 2 mf493845 unix-user     15845 Mar  5 01:23 start_atlas.sh
[2026-03-05 02:16:03] -rw-r--r-- 2 mf493845 unix-user    597956 Mar  5 01:23 input.tar.gz
[2026-03-05 02:16:03] -rw------- 1 mf493845 unix-user 214909985 Mar  5 02:14 HITS.pool.root.1
[2026-03-05 02:16:03] -rw------- 1 mf493845 unix-user    808960 Mar  5 02:16 result.tar.gz
02:16:04 (1373): run_atlas exited; CPU time 22371.651273
02:16:04 (1373): called boinc_finish(0)

</stderr_txt>
]]>

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