Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
18:30:58 (1129680): wrapper (7.7.26015): starting
18:30:58 (1129680): wrapper: running run_atlas (--nthreads 12)
[2026-03-04 18:30:58] Arguments: --nthreads 12
[2026-03-04 18:30:58] Threads: 12
[2026-03-04 18:30:58] Checking for CVMFS
[2026-03-04 18:30:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-04 18:30:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-04 18:30:58] Running cvmfs_config stat atlas.cern.ch
[2026-03-04 18:30:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-04 18:30:59] 2.13.2.0 3497 4737 58024 156897 2 11 12164020 16777217 916 130560 0 5367931 99.993 158004 749 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2026-03-04 18:30:59] CVMFS is ok
[2026-03-04 18:30:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 18:30:59] Checking for apptainer binary...
[2026-03-04 18:30:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-04 18:30:59] Running /usr/bin/apptainer --version
[2026-03-04 18:30:59] apptainer version 1.3.0-bp160.1.36
[2026-03-04 18:30:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 18:30:59] boinc-runner
[2026-03-04 18:30:59] apptainer works
[2026-03-04 18:30:59] Set ATHENA_PROC_NUMBER=12
[2026-03-04 18:30:59] Set ATHENA_CORE_NUMBER=12
[2026-03-04 18:30:59] Starting ATLAS job with PandaID=7040403703
[2026-03-04 18:30:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/24 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 19:03:22]  *** The last 200 lines of the pilot log: ***
[2026-03-04 19:03:22]  scope=mc23_13p6TeV
[2026-03-04 19:03:22]  status=None
[2026-03-04 19:03:22]  status_code=0
[2026-03-04 19:03:22]  storage_token=
[2026-03-04 19:03:22]  surl=/var/lib/boinc/slots/24/PanDA_Pilot-7040403703/log.48973452._000975.job.log.tgz.1
[2026-03-04 19:03:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9d/11/log.48973452._000975.job.log.tgz.1
[2026-03-04 19:03:22]  workdir=None
[2026-03-04 19:03:22] ]
[2026-03-04 19:03:22] 2026-03-05 01:02:47,924 | INFO     | transferring file log.48973452._000975.job.log.tgz.1 from /var/lib/boinc/slots/24/PanDA_Pilot-7040403703/log.48973452._000975.job.log.tgz.1 to /var/lib/boinc/slots
[2026-03-04 19:03:22] 2026-03-05 01:02:47,924 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/24/PanDA_Pilot-7040403703/log.48973452._000975.job.log.tgz.1 /var/lib/boinc/slots/24/log.48973452._000975.j
[2026-03-04 19:03:22] 2026-03-05 01:02:47,934 | INFO     | adding to output.list: log.48973452._000975.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9d/11/log.48973452._000975.job.log.tg
[2026-03-04 19:03:22] 2026-03-05 01:02:47,935 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-04 19:03:22] 2026-03-05 01:02:47,935 | INFO     | summary of transferred files:
[2026-03-04 19:03:22] 2026-03-05 01:02:47,935 | INFO     |  -- lfn=log.48973452._000975.job.log.tgz.1, status_code=0, status=transferred
[2026-03-04 19:03:22] 2026-03-05 01:02:47,935 | INFO     | stage-out finished correctly
[2026-03-04 19:03:22] 2026-03-05 01:02:49,232 | INFO     | time since job start (1897s) is within the limit (349056.0s)
[2026-03-04 19:03:22] 2026-03-05 01:02:49,781 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-04 19:03:22] 2026-03-05 01:02:49,817 | INFO     | job 7040403703 has state=finished
[2026-03-04 19:03:22] 2026-03-05 01:02:49,817 | INFO     | preparing for final server update for job 7040403703 in state='finished'
[2026-03-04 19:03:22] 2026-03-05 01:02:49,817 | INFO     | reading metadata from: /var/lib/boinc/slots/24/PanDA_Pilot-7040403703/jobReport.json
[2026-03-04 19:03:22] 2026-03-05 01:02:49,818 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/24/workernode_map.json
[2026-03-04 19:03:22] 2026-03-05 01:02:49,818 | INFO     | this job has now completed (state=finished)
[2026-03-04 19:03:22] 2026-03-05 01:02:49,818 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-04 19:03:22] 2026-03-05 01:02:49,818 | INFO     | log transfer has been attempted: DONE
[2026-03-04 19:03:22] 2026-03-05 01:02:49,818 | INFO     | job 7040403703 has finished - writing final server update
[2026-03-04 19:03:22] 2026-03-05 01:02:49,818 | INFO     | total number of processed events: 400 (read)
[2026-03-04 19:03:22] 2026-03-05 01:02:49,820 | INFO     | using path: /var/lib/boinc/slots/24/PanDA_Pilot-7040403703/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 19:03:22] 2026-03-05 01:02:49,820 | INFO     | extracted standard info from prmon json
[2026-03-04 19:03:22] 2026-03-05 01:02:49,820 | INFO     | extracted standard memory fields from prmon json
[2026-03-04 19:03:22] 2026-03-05 01:02:49,820 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-04 19:03:22] 2026-03-05 01:02:49,820 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-04 19:03:22] 2026-03-05 01:02:49,820 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-04 19:03:22] 2026-03-05 01:02:49,821 | INFO     | fitting pss+swap vs Time
[2026-03-04 19:03:22] 2026-03-05 01:02:49,821 | INFO     | sum of square deviations: 4279150.0
[2026-03-04 19:03:22] 2026-03-05 01:02:49,821 | INFO     | sum of deviations: -753051496.5000001
[2026-03-04 19:03:22] 2026-03-05 01:02:49,821 | INFO     | mean x: 1772671696.5
[2026-03-04 19:03:22] 2026-03-05 01:02:49,821 | INFO     | mean y: 3010161.2083333335
[2026-03-04 19:03:22] 2026-03-05 01:02:49,821 | INFO     | intersect: 311960542346.92725
[2026-03-04 19:03:22] 2026-03-05 01:02:49,821 | INFO     | chi2: 0.005180432949619011
[2026-03-04 19:03:22] 2026-03-05 01:02:49,821 | INFO     | current memory leak: -175.98 B/s (using 24 data points, chi2=0.01)
[2026-03-04 19:03:22] 2026-03-05 01:02:49,821 | INFO     | could have reported an average CPU frequency of 4035 MHz (5 samples)
[2026-03-04 19:03:22] 2026-03-05 01:02:49,821 | INFO     | ..............................
[2026-03-04 19:03:22] 2026-03-05 01:02:49,822 | INFO     | . Timing measurements:
[2026-03-04 19:03:22] 2026-03-05 01:02:49,822 | INFO     | . get job = 0 s
[2026-03-04 19:03:22] 2026-03-05 01:02:49,822 | INFO     | . initial setup = 6 s
[2026-03-04 19:03:22] 2026-03-05 01:02:49,822 | INFO     | . payload setup = 3 s
[2026-03-04 19:03:22] 2026-03-05 01:02:49,822 | INFO     | . stage-in = 0 s
[2026-03-04 19:03:22] 2026-03-05 01:02:49,822 | INFO     | . payload execution = 1876 s
[2026-03-04 19:03:22] 2026-03-05 01:02:49,822 | INFO     | . stage-out = 0 s
[2026-03-04 19:03:22] 2026-03-05 01:02:49,822 | INFO     | . log creation = 0 s
[2026-03-04 19:03:22] 2026-03-05 01:02:49,822 | INFO     | ..............................
[2026-03-04 19:03:22] 2026-03-05 01:02:49,857 | INFO     | 
[2026-03-04 19:03:22] 2026-03-05 01:02:49,857 | INFO     | job summary report
[2026-03-04 19:03:22] 2026-03-05 01:02:49,857 | INFO     | --------------------------------------------------
[2026-03-04 19:03:22] 2026-03-05 01:02:49,857 | INFO     | PanDA job id: 7040403703
[2026-03-04 19:03:22] 2026-03-05 01:02:49,857 | INFO     | task id: 48973452
[2026-03-04 19:03:22] 2026-03-05 01:02:49,857 | INFO     | errors: (none)
[2026-03-04 19:03:22] 2026-03-05 01:02:49,857 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-04 19:03:22] 2026-03-05 01:02:49,857 | INFO     | pilot state: finished 
[2026-03-04 19:03:22] 2026-03-05 01:02:49,857 | INFO     | transexitcode: 0
[2026-03-04 19:03:22] 2026-03-05 01:02:49,857 | INFO     | exeerrorcode: 0
[2026-03-04 19:03:22] 2026-03-05 01:02:49,857 | INFO     | exeerrordiag: 
[2026-03-04 19:03:22] 2026-03-05 01:02:49,858 | INFO     | exitcode: 0
[2026-03-04 19:03:22] 2026-03-05 01:02:49,858 | INFO     | exitmsg: OK
[2026-03-04 19:03:22] 2026-03-05 01:02:49,858 | INFO     | cpuconsumptiontime: 20183 s
[2026-03-04 19:03:22] 2026-03-05 01:02:49,858 | INFO     | nevents: 400
[2026-03-04 19:03:22] 2026-03-05 01:02:49,858 | INFO     | neventsw: 0
[2026-03-04 19:03:22] 2026-03-05 01:02:49,858 | INFO     | pid: 1138428
[2026-03-04 19:03:22] 2026-03-05 01:02:49,858 | INFO     | pgrp: 1138428
[2026-03-04 19:03:22] 2026-03-05 01:02:49,858 | INFO     | corecount: 12
[2026-03-04 19:03:22] 2026-03-05 01:02:49,858 | INFO     | event service: False
[2026-03-04 19:03:22] 2026-03-05 01:02:49,858 | INFO     | sizes: {0: 2295843, 11: 2295843, 1883: 2320807, 1884: 2320806, 1885: 2329862, 1887: 2330272}
[2026-03-04 19:03:22] 2026-03-05 01:02:49,858 | INFO     | --------------------------------------------------
[2026-03-04 19:03:22] 2026-03-05 01:02:49,858 | INFO     | 
[2026-03-04 19:03:22] 2026-03-05 01:02:49,858 | INFO     | executing command: ls -lF /var/lib/boinc/slots/24
[2026-03-04 19:03:22] 2026-03-05 01:02:49,870 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-04 19:03:22] 2026-03-05 01:02:49,870 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-04 19:03:22] 2026-03-05 01:02:49,870 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-04 19:03:22] 2026-03-05 01:02:49,870 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-04 19:03:22] 2026-03-05 01:02:49,870 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-04 19:03:22] 2026-03-05 01:02:49,870 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-04 19:03:22] 2026-03-05 01:02:49,870 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-04 19:03:22] 2026-03-05 01:02:49,870 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-04 19:03:22] 2026-03-05 01:02:49,870 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-04 19:03:22] 2026-03-05 01:02:49,870 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-04 19:03:22] 2026-03-05 01:02:49,870 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-04 19:03:22] 2026-03-05 01:02:49,870 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-04 19:03:22] 2026-03-05 01:02:49,870 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 19:03:22] 2026-03-05 01:02:49,871 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 19:03:22] 2026-03-05 01:02:49,871 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 19:03:22] 2026-03-05 01:02:49,871 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 19:03:22] 2026-03-05 01:02:49,871 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 19:03:22] 2026-03-05 01:02:49,871 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 19:03:22] 2026-03-05 01:02:49,871 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 19:03:22] 2026-03-05 01:02:49,871 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 19:03:22] 2026-03-05 01:02:49,871 | INFO     | job 7040403703 has completed (purged errors)
[2026-03-04 19:03:22] 2026-03-05 01:02:49,871 | INFO     | overall cleanup function is called
[2026-03-04 19:03:22] 2026-03-05 01:02:50,763 | WARNING  | process 1138428 can no longer be monitored (due to stat problems) - aborting
[2026-03-04 19:03:22] 2026-03-05 01:02:50,823 | INFO     | using path: /var/lib/boinc/slots/24/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 19:03:22] 2026-03-05 01:02:50,823 | INFO     | using path: /var/lib/boinc/slots/24/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 19:03:22] 2026-03-05 01:02:50,824 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-04 19:03:22] 2026-03-05 01:02:50,824 | WARNING  | maxPSS not found in memory monitor output
[2026-03-04 19:03:22] 2026-03-05 01:02:50,824 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/slots/24/PanDA_Pilot-7040403703/payload.stdout) since it has not been created yet
[2026-03-04 19:03:22] 2026-03-05 01:02:50,824 | INFO     | executing command: df -mP /var/lib/boinc/slots/24
[2026-03-04 19:03:22] 2026-03-05 01:02:50,833 | INFO     | sufficient remaining disk space (3867481735168 B)
[2026-03-04 19:03:22] 2026-03-05 01:02:50,833 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-04 19:03:22] 2026-03-05 01:02:50,833 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/24/PanDA_Pilot-7040403703/HITS.48973452._000975.pool.root.1 since it does not exist
[2026-03-04 19:03:22] 2026-03-05 01:02:50,878 | INFO     | --- collectZombieJob: --- 10, [1138428]
[2026-03-04 19:03:22] 2026-03-05 01:02:50,879 | INFO     | zombie collector waiting for pid 1138428
[2026-03-04 19:03:22] 2026-03-05 01:02:50,879 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 19:03:22] 2026-03-05 01:02:50,879 | INFO     | collected zombie processes
[2026-03-04 19:03:22] 2026-03-05 01:02:50,879 | INFO     | will attempt to kill all subprocesses of pid=1138428
[2026-03-04 19:03:22] 2026-03-05 01:02:50,928 | INFO     | number of running child processes to parent process 1138428: 1
[2026-03-04 19:03:22] 2026-03-05 01:02:50,928 | INFO     | maximum number of monitored processes: 6
[2026-03-04 19:03:22] 2026-03-05 01:02:50,928 | INFO     | aborting job monitoring since job object (job id=7040403703) has expired
[2026-03-04 19:03:22] 2026-03-05 01:02:50,973 | INFO     | process IDs to be killed: [1138428] (in reverse order)
[2026-03-04 19:03:22] 2026-03-05 01:02:51,011 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 19:03:22] 2026-03-05 01:02:51,011 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 19:03:22] 2026-03-05 01:02:51,014 | INFO     | did not find any defunct processes belonging to 1138428
[2026-03-04 19:03:22] 2026-03-05 01:02:51,016 | INFO     | did not find any defunct processes belonging to 1138428
[2026-03-04 19:03:22] 2026-03-05 01:02:51,016 | INFO     | ready for new job
[2026-03-04 19:03:22] 2026-03-05 01:02:51,016 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 19:03:22] 2026-03-05 01:02:51,017 | INFO     | **************************************
[2026-03-04 19:03:22] 2026-03-05 01:02:51,017 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 19:03:22] 2026-03-05 01:02:51,018 | INFO     | **************************************
[2026-03-04 19:03:22] 2026-03-05 01:02:51,018 | INFO     | 
[2026-03-04 19:03:22] 2026-03-05 01:02:51,019 | INFO     | architecture information:
[2026-03-04 19:03:22] 2026-03-05 01:02:51,019 | INFO     | executing command: cat /etc/os-release
[2026-03-04 19:03:22] 2026-03-05 01:02:51,025 | INFO     | cat /etc/os-release:
[2026-03-04 19:03:22] NAME="CentOS Linux"
[2026-03-04 19:03:22] VERSION="7 (Core)"
[2026-03-04 19:03:22] ID="centos"
[2026-03-04 19:03:22] ID_LIKE="rhel fedora"
[2026-03-04 19:03:22] VERSION_ID="7"
[2026-03-04 19:03:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 19:03:22] ANSI_COLOR="0;31"
[2026-03-04 19:03:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 19:03:22] HOME_URL="https://www.centos.org/"
[2026-03-04 19:03:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 19:03:22] 
[2026-03-04 19:03:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 19:03:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 19:03:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 19:03:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 19:03:22] 
[2026-03-04 19:03:22] 2026-03-05 01:02:51,025 | INFO     | **************************************
[2026-03-04 19:03:22] 2026-03-05 01:02:51,528 | INFO     | executing command: df -mP /var/lib/boinc/slots/24
[2026-03-04 19:03:22] 2026-03-05 01:02:51,536 | INFO     | sufficient remaining disk space (3867481735168 B)
[2026-03-04 19:03:22] 2026-03-05 01:02:51,536 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 19:03:22] 2026-03-05 01:02:51,537 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 19:03:22] 2026-03-05 01:02:51,537 | INFO     | update_server=False
[2026-03-04 19:03:22] 2026-03-05 01:02:51,537 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 19:03:22] 2026-03-05 01:02:51,537 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 19:03:22] 2026-03-05 01:02:51,537 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 19:03:22] 2026-03-05 01:02:51,537 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 19:03:22] 2026-03-05 01:02:51,537 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 19:03:22] 2026-03-05 01:02:51,537 | INFO     | will abort loop
[2026-03-04 19:03:22] 2026-03-05 01:02:51,860 | INFO     | all data control threads have been joined
[2026-03-04 19:03:22] 2026-03-05 01:02:52,542 | INFO     | [job] queue monitor thread has finished
[2026-03-04 19:03:22] 2026-03-05 01:02:52,542 | INFO     | [job] retrieve thread has finished
[2026-03-04 19:03:22] 2026-03-05 01:02:52,543 | INFO     | [job] job monitor thread has finished
[2026-03-04 19:03:22] 2026-03-05 01:02:52,599 | INFO     | all job control threads have been joined
[2026-03-04 19:03:22] 2026-03-05 01:02:52,803 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 19:03:22] 2026-03-05 01:02:52,866 | INFO     | [data] control thread has finished
[2026-03-04 19:03:22] 2026-03-05 01:02:52,918 | INFO     | [payload] validate_post thread has finished
[2026-03-04 19:03:22] 2026-03-05 01:02:52,957 | INFO     | all payload control threads have been joined
[2026-03-04 19:03:22] 2026-03-05 01:02:53,510 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 19:03:22] 2026-03-05 01:02:53,543 | INFO     | [data] copytool_out thread has finished
[2026-03-04 19:03:22] 2026-03-05 01:02:53,604 | INFO     | [job] control thread has finished
[2026-03-04 19:03:22] 2026-03-05 01:02:53,636 | INFO     | [job] validate thread has finished
[2026-03-04 19:03:22] 2026-03-05 01:02:53,681 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 19:03:22] 2026-03-05 01:02:53,781 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 19:03:22] 2026-03-05 01:02:53,897 | INFO     | [data] copytool_in thread has finished
[2026-03-04 19:03:22] 2026-03-05 01:02:53,962 | INFO     | [payload] control thread has finished
[2026-03-04 19:03:22] 2026-03-05 01:02:54,051 | INFO     | [payload] failed_post thread has finished
[2026-03-04 19:03:22] 2026-03-05 01:02:55,543 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 19:03:22] 2026-03-05 01:03:14,541 | INFO     | [monitor] cgroup control has ended
[2026-03-04 19:03:22] 2026-03-05 01:03:15,562 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139915210434368)>', '<ExcThread(monitor, started 139914574284544)>']
[2026-03-04 19:03:22] 2026-03-05 01:03:20,586 | INFO     | all workflow threads have been joined
[2026-03-04 19:03:22] 2026-03-05 01:03:20,587 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 19:03:22] 2026-03-05 01:03:20,587 | INFO     | traces error code: 0
[2026-03-04 19:03:22] 2026-03-05 01:03:20,587 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 19:03:22] 2026-03-05 01:03:22,385 | INFO     | PID=1133608 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-04 19:03:22] 2026-03-05 01:03:22,385 | INFO     | .. there are 2 such processes running
[2026-03-04 19:03:22] 2026-03-05 01:03:22,386 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 19:03:22] 2026-03-05 01:03:22,386 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 19:03:22] 2026-03-05 01:03:22,386 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 19:03:22] 2026-03-05 01:03:22,386 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 19:03:22] 2026-03-05 01:03:22,386 | CRITICAL | thread 'MainThread' is not alive
[2026-03-04 19:03:22] 2026-03-05 01:03:22,386 | INFO     | [monitor] control thread has ended
[2026-03-04 19:03:22] 2026-03-05 01:03:22,445 [wrapper] ==== pilot stdout END ====
[2026-03-04 19:03:22] 2026-03-05 01:03:22,447 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 19:03:22] 2026-03-05 01:03:22,449 [wrapper] pilotpid: 1133608
[2026-03-04 19:03:22] 2026-03-05 01:03:22,450 [wrapper] Pilot exit status: 0
[2026-03-04 19:03:22] 2026-03-05 01:03:22,456 [wrapper] pandaids: 7040403703
[2026-03-04 19:03:22] 2026-03-05 01:03:22,476 [wrapper] cleanup supervisor_pilot 1177977 1133609
[2026-03-04 19:03:22] 2026-03-05 01:03:22,478 [wrapper] Test setup, not cleaning
[2026-03-04 19:03:22] 2026-03-05 01:03:22,479 [wrapper] apfmon messages muted
[2026-03-04 19:03:22] 2026-03-05 01:03:22,480 [wrapper] ==== wrapper stdout END ====
[2026-03-04 19:03:22] 2026-03-05 01:03:22,481 [wrapper] ==== wrapper stderr END ====
[2026-03-04 19:03:22]  *** Error codes and diagnostics ***
[2026-03-04 19:03:22]     "exeErrorCode": 0,
[2026-03-04 19:03:22]     "exeErrorDiag": "",
[2026-03-04 19:03:22]     "pilotErrorCode": 0,
[2026-03-04 19:03:22]     "pilotErrorDiag": "",
[2026-03-04 19:03:22]  *** Listing of results directory ***
[2026-03-04 19:03:22] total 509088
[2026-03-04 19:03:22] -rw-r--r--. 1 boinc boinc    584627 Mar  4 11:22 pilot3.tar.gz
[2026-03-04 19:03:22] -rwx------. 1 boinc boinc     36322 Mar  4 11:49 runpilot2-wrapper.sh
[2026-03-04 19:03:22] -rw-r--r--. 1 boinc boinc      5111 Mar  4 11:51 queuedata.json
[2026-03-04 19:03:22] -rw-r--r--. 1 boinc boinc       100 Mar  4 18:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 19:03:22] -rwxr-xr-x. 1 boinc boinc      7986 Mar  4 18:30 run_atlas
[2026-03-04 19:03:22] -rw-r--r--. 1 boinc boinc       105 Mar  4 18:30 job.xml
[2026-03-04 19:03:22] -rw-r--r--. 2 boinc boinc    597966 Mar  4 18:30 input.tar.gz
[2026-03-04 19:03:22] -rw-r--r--. 2 boinc boinc 299246203 Mar  4 18:30 EVNT.48717224._000039.pool.root.1
[2026-03-04 19:03:22] -rw-r--r--. 2 boinc boinc     15845 Mar  4 18:30 start_atlas.sh
[2026-03-04 19:03:22] drwxrwx--x. 1 boinc boinc        76 Mar  4 18:30 shared
[2026-03-04 19:03:22] -rw-r--r--. 1 boinc boinc     10053 Mar  4 18:30 init_data.xml
[2026-03-04 19:03:22] -rw-r--r--. 1 boinc boinc         0 Mar  4 18:30 boinc_setup_complete
[2026-03-04 19:03:22] -rw-r--r--. 1 boinc boinc         0 Mar  4 18:30 boinc_lockfile
[2026-03-04 19:03:22] -rw-r--r--. 1 boinc boinc      2593 Mar  4 18:30 pandaJob.out
[2026-03-04 19:03:22] -rw-------. 1 boinc boinc        63 Mar  4 18:30 setup.sh.local
[2026-03-04 19:03:22] -rw-------. 1 boinc boinc    997749 Mar  4 18:31 agis_schedconf.cvmfs.json
[2026-03-04 19:03:22] -rw-------. 1 boinc boinc   1521291 Mar  4 18:31 agis_ddmendpoints.agis.ALL.json
[2026-03-04 19:03:22] -rw-------. 1 boinc boinc       432 Mar  4 18:31 workernode_map.json
[2026-03-04 19:03:22] drwx------. 1 boinc boinc       414 Mar  4 18:31 pilot3
[2026-03-04 19:03:22] -rw-------. 1 boinc boinc 216776807 Mar  4 19:02 HITS.48973452._000975.pool.root.1
[2026-03-04 19:03:22] -rw-------. 1 boinc boinc      1025 Mar  4 19:02 memory_monitor_summary.json
[2026-03-04 19:03:22] -rw-------. 1 boinc boinc    362177 Mar  4 19:02 log.48973452._000975.job.log.tgz.1
[2026-03-04 19:03:22] -rw-r--r--. 1 boinc boinc       529 Mar  4 19:02 boinc_task_state.xml
[2026-03-04 19:03:22] -rw-------. 1 boinc boinc      6343 Mar  4 19:02 heartbeat.json
[2026-03-04 19:03:22] -rw-------. 1 boinc boinc       892 Mar  4 19:03 pilotlog.txt
[2026-03-04 19:03:22] -rw-------. 1 boinc boinc        95 Mar  4 19:03 pilot_heartbeat.json
[2026-03-04 19:03:22] -rw-r--r--. 1 boinc boinc      8192 Mar  4 19:03 boinc_mmap_file
[2026-03-04 19:03:22] -rw-r--r--. 1 boinc boinc        27 Mar  4 19:03 wrapper_checkpoint.txt
[2026-03-04 19:03:22] -rw-------. 1 boinc boinc    315397 Mar  4 19:03 log.48973452._000975.job.log.1
[2026-03-04 19:03:22] -rw-------. 1 boinc boinc       357 Mar  4 19:03 output.list
[2026-03-04 19:03:22] -rw-r--r--. 1 boinc boinc       620 Mar  4 19:03 runtime_log
[2026-03-04 19:03:22] -rw-------. 1 boinc boinc    696320 Mar  4 19:03 result.tar.gz
[2026-03-04 19:03:22] -rw-r--r--. 1 boinc boinc      9413 Mar  4 19:03 runtime_log.err
[2026-03-04 19:03:22] -rw-------. 1 boinc boinc       652 Mar  4 19:03 kpzNDmiW5H9n9Rq4apOajLDm4fhM0noT9bVooX4SDmUJJLDmIV94qm.diag
[2026-03-04 19:03:22] -rw-r--r--. 1 boinc boinc     21796 Mar  4 19:03 stderr.txt
[2026-03-04 19:03:22] HITS file was successfully produced:
[2026-03-04 19:03:22] -rw-------. 1 boinc boinc 216776807 Mar  4 19:02 shared/HITS.pool.root.1
[2026-03-04 19:03:22]  *** Contents of shared directory: ***
[2026-03-04 19:03:22] total 505216
[2026-03-04 19:03:22] -rw-r--r--. 2 boinc boinc    597966 Mar  4 18:30 input.tar.gz
[2026-03-04 19:03:22] -rw-r--r--. 2 boinc boinc 299246203 Mar  4 18:30 ATLAS.root_0
[2026-03-04 19:03:22] -rw-r--r--. 2 boinc boinc     15845 Mar  4 18:30 start_atlas.sh
[2026-03-04 19:03:22] -rw-------. 1 boinc boinc 216776807 Mar  4 19:02 HITS.pool.root.1
[2026-03-04 19:03:22] -rw-------. 1 boinc boinc    696320 Mar  4 19:03 result.tar.gz
19:03:24 (1129680): run_atlas exited; CPU time 20192.677985
19:03:24 (1129680): called boinc_finish(0)

</stderr_txt>
]]>

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