Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:25:44 (163524): wrapper (7.7.26015): starting
17:25:44 (163524): wrapper: running run_atlas (--nthreads 4)
[2026-03-05 17:25:44] Arguments: --nthreads 4
[2026-03-05 17:25:44] Threads: 4
[2026-03-05 17:25:44] Checking for CVMFS
[2026-03-05 17:25:44] No cvmfs_config command found, will try listing directly
[2026-03-05 17:25:44] CVMFS is ok
[2026-03-05 17:25:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-05 17:25:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-05 17:25:44] Further information can be found at the LHC@home message board.
[2026-03-05 17:25:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 17:25:44] Checking for apptainer binary...
[2026-03-05 17:25:44] which: no apptainer in ((null))
[2026-03-05 17:25:44] apptainer is not installed, using version from CVMFS
[2026-03-05 17:25:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 17:25:44] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot164/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut20.grid.cesnet.cz
[2026-03-05 17:25:44] apptainer works
[2026-03-05 17:25:44] Set ATHENA_PROC_NUMBER=4
[2026-03-05 17:25:44] Set ATHENA_CORE_NUMBER=4
[2026-03-05 17:25:44] Starting ATLAS job with PandaID=7040399002
[2026-03-05 17:25:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot164/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 18:57:29]  *** The last 200 lines of the pilot log: ***
[2026-03-05 18:57:29]  guid=5549fd70-4a67-4c3f-9bd6-8329ccf0b5f5
[2026-03-05 18:57:29]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-05 18:57:29]  is_altstaged=None
[2026-03-05 18:57:29]  is_tar=False
[2026-03-05 18:57:29]  lfn=log.48973452._000655.job.log.tgz.1
[2026-03-05 18:57:29]  mtime=0
[2026-03-05 18:57:29]  protocol_id=None
[2026-03-05 18:57:29]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-05 18:57:29]  replicas=None
[2026-03-05 18:57:29]  scope=mc23_13p6TeV
[2026-03-05 18:57:29]  status=None
[2026-03-05 18:57:29]  status_code=0
[2026-03-05 18:57:29]  storage_token=
[2026-03-05 18:57:29]  surl=/var/lib/boinc/var/slot164/slots/0/PanDA_Pilot-7040399002/log.48973452._000655.job.log.tgz.1
[2026-03-05 18:57:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b4/5a/log.48973452._000655.job.log.tgz.1
[2026-03-05 18:57:29]  workdir=None
[2026-03-05 18:57:29] ]
[2026-03-05 18:57:29] 2026-03-05 17:55:48,542 | INFO     | transferring file log.48973452._000655.job.log.tgz.1 from /var/lib/boinc/var/slot164/slots/0/PanDA_Pilot-7040399002/log.48973452._000655.job.log.tgz.1 to /var/lib/
[2026-03-05 18:57:29] 2026-03-05 17:55:48,542 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot164/slots/0/PanDA_Pilot-7040399002/log.48973452._000655.job.log.tgz.1 /var/lib/boinc/var/slot164/slots/0/
[2026-03-05 18:57:29] 2026-03-05 17:55:48,583 | INFO     | adding to output.list: log.48973452._000655.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b4/5a/log.48973452._000655.job.log.tg
[2026-03-05 18:57:29] 2026-03-05 17:55:48,584 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-05 18:57:29] 2026-03-05 17:55:48,584 | INFO     | summary of transferred files:
[2026-03-05 18:57:29] 2026-03-05 17:55:48,584 | INFO     |  -- lfn=log.48973452._000655.job.log.tgz.1, status_code=0, status=transferred
[2026-03-05 18:57:29] 2026-03-05 17:55:48,584 | INFO     | stage-out finished correctly
[2026-03-05 18:57:29] 2026-03-05 17:55:50,088 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-05 18:57:29] 2026-03-05 17:55:50,215 | INFO     | time since job start (5371s) is within the limit (349056.0s)
[2026-03-05 18:57:29] 2026-03-05 17:55:50,434 | INFO     | job 7040399002 has state=finished
[2026-03-05 18:57:29] 2026-03-05 17:55:50,434 | INFO     | preparing for final server update for job 7040399002 in state='finished'
[2026-03-05 18:57:29] 2026-03-05 17:55:50,434 | INFO     | reading metadata from: /var/lib/boinc/var/slot164/slots/0/PanDA_Pilot-7040399002/jobReport.json
[2026-03-05 18:57:29] 2026-03-05 17:55:50,436 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot164/slots/0/workernode_map.json
[2026-03-05 18:57:29] 2026-03-05 17:55:50,436 | INFO     | this job has now completed (state=finished)
[2026-03-05 18:57:29] 2026-03-05 17:55:50,436 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-05 18:57:29] 2026-03-05 17:55:50,436 | INFO     | log transfer has been attempted: DONE
[2026-03-05 18:57:29] 2026-03-05 17:55:50,436 | INFO     | job 7040399002 has finished - writing final server update
[2026-03-05 18:57:29] 2026-03-05 17:55:50,436 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_546778/.job.ad'
[2026-03-05 18:57:29] 2026-03-05 17:55:50,436 | INFO     | total number of processed events: 400 (read)
[2026-03-05 18:57:29] 2026-03-05 17:55:50,455 | INFO     | using path: /var/lib/boinc/var/slot164/slots/0/PanDA_Pilot-7040399002/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 18:57:29] 2026-03-05 17:55:50,456 | INFO     | extracted standard info from prmon json
[2026-03-05 18:57:29] 2026-03-05 17:55:50,456 | INFO     | extracted standard memory fields from prmon json
[2026-03-05 18:57:29] 2026-03-05 17:55:50,456 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-05 18:57:29] 2026-03-05 17:55:50,456 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-05 18:57:29] 2026-03-05 17:55:50,456 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-05 18:57:29] 2026-03-05 17:55:50,457 | INFO     | fitting pss+swap vs Time
[2026-03-05 18:57:29] 2026-03-05 17:55:50,457 | INFO     | sum of square deviations: 164765880.0
[2026-03-05 18:57:29] 2026-03-05 17:55:50,458 | INFO     | sum of deviations: -656413679.9999999
[2026-03-05 18:57:29] 2026-03-05 17:55:50,458 | INFO     | mean x: 1772730758.0
[2026-03-05 18:57:29] 2026-03-05 17:55:50,458 | INFO     | mean y: 2343619.061728395
[2026-03-05 18:57:29] 2026-03-05 17:55:50,458 | INFO     | intersect: 7064756786.812049
[2026-03-05 18:57:29] 2026-03-05 17:55:50,458 | INFO     | chi2: 0.0005705931649373173
[2026-03-05 18:57:29] 2026-03-05 17:55:50,458 | INFO     | current memory leak: -3.98 B/s (using 81 data points, chi2=0.00)
[2026-03-05 18:57:29] 2026-03-05 17:55:50,458 | INFO     | could have reported an average CPU frequency of 3570 MHz (6 samples)
[2026-03-05 18:57:29] 2026-03-05 17:55:50,458 | INFO     | ..............................
[2026-03-05 18:57:29] 2026-03-05 17:55:50,458 | INFO     | . Timing measurements:
[2026-03-05 18:57:29] 2026-03-05 17:55:50,458 | INFO     | . get job = 0 s
[2026-03-05 18:57:29] 2026-03-05 17:55:50,458 | INFO     | . initial setup = 12 s
[2026-03-05 18:57:29] 2026-03-05 17:55:50,458 | INFO     | . payload setup = 12 s
[2026-03-05 18:57:29] 2026-03-05 17:55:50,458 | INFO     | . stage-in = 0 s
[2026-03-05 18:57:29] 2026-03-05 17:55:50,458 | INFO     | . payload execution = 5340 s
[2026-03-05 18:57:29] 2026-03-05 17:55:50,458 | INFO     | . stage-out = 0 s
[2026-03-05 18:57:29] 2026-03-05 17:55:50,458 | INFO     | . log creation = 0 s
[2026-03-05 18:57:29] 2026-03-05 17:55:50,458 | INFO     | ..............................
[2026-03-05 18:57:29] 2026-03-05 17:55:50,507 | INFO     | 
[2026-03-05 18:57:29] 2026-03-05 17:55:50,508 | INFO     | job summary report
[2026-03-05 18:57:29] 2026-03-05 17:55:50,508 | INFO     | --------------------------------------------------
[2026-03-05 18:57:29] 2026-03-05 17:55:50,508 | INFO     | PanDA job id: 7040399002
[2026-03-05 18:57:29] 2026-03-05 17:55:50,508 | INFO     | task id: 48973452
[2026-03-05 18:57:29] 2026-03-05 17:55:50,508 | INFO     | errors: (none)
[2026-03-05 18:57:29] 2026-03-05 17:55:50,508 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-05 18:57:29] 2026-03-05 17:55:50,508 | INFO     | pilot state: finished 
[2026-03-05 18:57:29] 2026-03-05 17:55:50,508 | INFO     | transexitcode: 0
[2026-03-05 18:57:29] 2026-03-05 17:55:50,508 | INFO     | exeerrorcode: 0
[2026-03-05 18:57:29] 2026-03-05 17:55:50,508 | INFO     | exeerrordiag: 
[2026-03-05 18:57:29] 2026-03-05 17:55:50,508 | INFO     | exitcode: 0
[2026-03-05 18:57:29] 2026-03-05 17:55:50,508 | INFO     | exitmsg: OK
[2026-03-05 18:57:29] 2026-03-05 17:55:50,508 | INFO     | cpuconsumptiontime: 20352 s
[2026-03-05 18:57:29] 2026-03-05 17:55:50,508 | INFO     | nevents: 400
[2026-03-05 18:57:29] 2026-03-05 17:55:50,508 | INFO     | neventsw: 0
[2026-03-05 18:57:29] 2026-03-05 17:55:50,508 | INFO     | pid: 174620
[2026-03-05 18:57:29] 2026-03-05 17:55:50,508 | INFO     | pgrp: 174620
[2026-03-05 18:57:29] 2026-03-05 17:55:50,508 | INFO     | corecount: 4
[2026-03-05 18:57:29] 2026-03-05 17:55:50,508 | INFO     | event service: False
[2026-03-05 18:57:29] 2026-03-05 17:55:50,508 | INFO     | sizes: {0: 2295421, 1: 2295882, 12: 2295882, 5356: 2322368, 5357: 2331390, 5359: 2331768}
[2026-03-05 18:57:29] 2026-03-05 17:55:50,508 | INFO     | --------------------------------------------------
[2026-03-05 18:57:29] 2026-03-05 17:55:50,508 | INFO     | 
[2026-03-05 18:57:29] 2026-03-05 17:55:50,508 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot164/slots/0
[2026-03-05 18:57:29] 2026-03-05 17:55:50,524 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-05 18:57:29] 2026-03-05 17:55:50,524 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-05 18:57:29] 2026-03-05 17:55:50,524 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-05 18:57:29] 2026-03-05 17:55:50,524 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-05 18:57:29] 2026-03-05 17:55:50,524 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-05 18:57:29] 2026-03-05 17:55:50,524 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-05 18:57:29] 2026-03-05 17:55:50,524 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-05 18:57:29] 2026-03-05 17:55:50,524 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-05 18:57:29] 2026-03-05 17:55:50,524 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-05 18:57:29] 2026-03-05 17:55:50,524 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-05 18:57:29] 2026-03-05 17:55:50,524 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-05 18:57:29] 2026-03-05 17:55:50,524 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-05 18:57:29] 2026-03-05 17:55:50,524 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-05 18:57:29] 2026-03-05 17:55:50,524 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-05 18:57:29] 2026-03-05 17:55:50,524 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-05 18:57:29] 2026-03-05 17:55:50,524 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-05 18:57:29] 2026-03-05 17:55:50,524 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-05 18:57:29] 2026-03-05 17:55:50,524 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-05 18:57:29] 2026-03-05 17:55:50,524 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-05 18:57:29] 2026-03-05 17:55:50,525 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-05 18:57:29] 2026-03-05 17:55:50,525 | INFO     | job 7040399002 has completed (purged errors)
[2026-03-05 18:57:29] 2026-03-05 17:55:50,525 | INFO     | overall cleanup function is called
[2026-03-05 18:57:29] 2026-03-05 17:55:51,531 | INFO     | --- collectZombieJob: --- 10, [174620]
[2026-03-05 18:57:29] 2026-03-05 17:55:51,531 | INFO     | zombie collector waiting for pid 174620
[2026-03-05 18:57:29] 2026-03-05 17:55:51,531 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 18:57:29] 2026-03-05 17:55:51,531 | INFO     | collected zombie processes
[2026-03-05 18:57:29] 2026-03-05 17:55:51,531 | INFO     | will attempt to kill all subprocesses of pid=174620
[2026-03-05 18:57:29] 2026-03-05 17:55:52,020 | INFO     | process IDs to be killed: [174620] (in reverse order)
[2026-03-05 18:57:29] 2026-03-05 17:55:52,276 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 18:57:29] 2026-03-05 17:55:52,277 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 18:57:29] 2026-03-05 17:55:52,306 | INFO     | did not find any defunct processes belonging to 174620
[2026-03-05 18:57:29] 2026-03-05 17:55:52,336 | INFO     | did not find any defunct processes belonging to 174620
[2026-03-05 18:57:29] 2026-03-05 17:55:52,336 | INFO     | ready for new job
[2026-03-05 18:57:29] 2026-03-05 17:55:52,336 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 18:57:29] 2026-03-05 17:55:52,337 | INFO     | **************************************
[2026-03-05 18:57:29] 2026-03-05 17:55:52,337 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 18:57:29] 2026-03-05 17:55:52,337 | INFO     | **************************************
[2026-03-05 18:57:29] 2026-03-05 17:55:52,337 | INFO     | 
[2026-03-05 18:57:29] 2026-03-05 17:55:52,343 | INFO     | architecture information:
[2026-03-05 18:57:29] 2026-03-05 17:55:52,343 | INFO     | executing command: cat /etc/os-release
[2026-03-05 18:57:29] 2026-03-05 17:55:52,360 | INFO     | cat /etc/os-release:
[2026-03-05 18:57:29] NAME="CentOS Linux"
[2026-03-05 18:57:29] VERSION="7 (Core)"
[2026-03-05 18:57:29] ID="centos"
[2026-03-05 18:57:29] ID_LIKE="rhel fedora"
[2026-03-05 18:57:29] VERSION_ID="7"
[2026-03-05 18:57:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 18:57:29] ANSI_COLOR="0;31"
[2026-03-05 18:57:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 18:57:29] HOME_URL="https://www.centos.org/"
[2026-03-05 18:57:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 18:57:29] 
[2026-03-05 18:57:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 18:57:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 18:57:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 18:57:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 18:57:29] 
[2026-03-05 18:57:29] 2026-03-05 17:55:52,361 | INFO     | **************************************
[2026-03-05 18:57:29] 2026-03-05 17:55:52,863 | INFO     | executing command: df -mP /var/lib/boinc/var/slot164/slots/0
[2026-03-05 18:57:29] 2026-03-05 17:55:52,885 | INFO     | sufficient remaining disk space (20631781376 B)
[2026-03-05 18:57:29] 2026-03-05 17:55:52,885 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 18:57:29] 2026-03-05 17:55:52,885 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 18:57:29] 2026-03-05 17:55:52,885 | INFO     | update_server=False
[2026-03-05 18:57:29] 2026-03-05 17:55:52,885 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 18:57:29] 2026-03-05 17:55:53,132 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-05 18:57:29] 2026-03-05 17:55:53,132 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-05 18:57:29] 2026-03-05 17:55:53,132 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 18:57:29] 2026-03-05 17:55:53,132 | INFO     | will abort loop
[2026-03-05 18:57:29] 2026-03-05 17:55:53,180 | INFO     | all data control threads have been joined
[2026-03-05 18:57:29] 2026-03-05 17:55:53,280 | INFO     | all payload control threads have been joined
[2026-03-05 18:57:29] 2026-03-05 17:55:53,356 | INFO     | all job control threads have been joined
[2026-03-05 18:57:29] 2026-03-05 17:55:53,890 | INFO     | [job] retrieve thread has finished
[2026-03-05 18:57:29] 2026-03-05 17:55:54,137 | INFO     | [job] job monitor thread has finished
[2026-03-05 18:57:29] 2026-03-05 17:55:54,152 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 18:57:29] 2026-03-05 17:55:54,153 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 18:57:29] 2026-03-05 17:55:54,185 | INFO     | [data] control thread has finished
[2026-03-05 18:57:29] 2026-03-05 17:55:54,212 | INFO     | [data] copytool_in thread has finished
[2026-03-05 18:57:29] 2026-03-05 17:55:54,285 | INFO     | [payload] control thread has finished
[2026-03-05 18:57:29] 2026-03-05 17:55:54,343 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 18:57:29] 2026-03-05 17:55:54,361 | INFO     | [job] control thread has finished
[2026-03-05 18:57:29] 2026-03-05 17:55:54,420 | INFO     | [payload] failed_post thread has finished
[2026-03-05 18:57:29] 2026-03-05 17:55:54,729 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 18:57:29] 2026-03-05 17:55:55,177 | INFO     | [payload] validate_post thread has finished
[2026-03-05 18:57:29] 2026-03-05 17:55:55,379 | INFO     | [job] validate thread has finished
[2026-03-05 18:57:29] 2026-03-05 17:55:55,517 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 18:57:29] 2026-03-05 17:55:56,151 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 18:57:29] 2026-03-05 17:55:56,158 | INFO     | [data] copytool_out thread has finished
[2026-03-05 18:57:29] 2026-03-05 17:55:56,522 | INFO     | [job] queue monitor thread has finished
[2026-03-05 18:57:29] 2026-03-05 17:56:00,157 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 18:57:29] 2026-03-05 17:56:03,873 | INFO     | job.realtimelogging is not enabled
[2026-03-05 18:57:29] 2026-03-05 17:56:04,879 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 18:57:29] 2026-03-05 17:56:06,237 [wrapper] supervise_pilot (15 min periods counter: 7)
[2026-03-05 18:57:29] 2026-03-05 17:56:23,964 | INFO     | PID=168422 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-05 18:57:29] 2026-03-05 17:56:23,964 | INFO     | .. there are 46 such processes running
[2026-03-05 18:57:29] 2026-03-05 17:56:23,964 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 18:57:29] 2026-03-05 17:56:23,964 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 18:57:29] 2026-03-05 17:56:23,964 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 18:57:29] 2026-03-05 17:56:27,829 | INFO     | [monitor] cgroup control has ended
[2026-03-05 18:57:29] 2026-03-05 17:56:28,104 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22395826136896)>', '<ExcThread(monitor, started 22395590297344)>']
[2026-03-05 18:57:29] 2026-03-05 17:56:28,989 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 18:57:29] 2026-03-05 17:56:28,989 | INFO     | [monitor] control thread has ended
[2026-03-05 18:57:29] 2026-03-05 17:56:33,129 | INFO     | all workflow threads have been joined
[2026-03-05 18:57:29] 2026-03-05 17:56:33,129 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 18:57:29] 2026-03-05 17:56:33,129 | INFO     | traces error code: 0
[2026-03-05 18:57:29] 2026-03-05 17:56:33,129 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 18:57:29] 2026-03-05 17:56:33,284 [wrapper] ==== pilot stdout END ====
[2026-03-05 18:57:29] 2026-03-05 17:56:33,294 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 18:57:29] 2026-03-05 17:56:33,297 [wrapper] pilotpid: 168422
[2026-03-05 18:57:29] 2026-03-05 17:56:33,298 [wrapper] Pilot exit status: 0
[2026-03-05 18:57:29] 2026-03-05 17:56:33,337 [wrapper] pandaids: 7040399002
[2026-03-05 18:57:29] 2026-03-05 17:56:33,476 [wrapper] cleanup supervisor_pilot  850868 168423
[2026-03-05 18:57:29] 2026-03-05 17:56:33,479 [wrapper] Test setup, not cleaning
[2026-03-05 18:57:29] 2026-03-05 17:56:33,481 [wrapper] apfmon messages muted
[2026-03-05 18:57:29] 2026-03-05 17:56:33,483 [wrapper] ==== wrapper stdout END ====
[2026-03-05 18:57:29] 2026-03-05 17:56:33,485 [wrapper] ==== wrapper stderr END ====
[2026-03-05 18:57:29]  *** Error codes and diagnostics ***
[2026-03-05 18:57:29]     "exeErrorCode": 0,
[2026-03-05 18:57:29]     "exeErrorDiag": "",
[2026-03-05 18:57:29]     "pilotErrorCode": 0,
[2026-03-05 18:57:29]     "pilotErrorDiag": "",
[2026-03-05 18:57:29]  *** Listing of results directory ***
[2026-03-05 18:57:29] total 499960
[2026-03-05 18:57:29] -rw-r--r--. 1 boinc boinc    584627 Mar  4 18:22 pilot3.tar.gz
[2026-03-05 18:57:29] -rw-r--r--. 1 boinc boinc      5111 Mar  4 18:46 queuedata.json
[2026-03-05 18:57:29] -rwx------. 1 boinc boinc     36322 Mar  4 18:47 runpilot2-wrapper.sh
[2026-03-05 18:57:29] -rw-r--r--. 1 boinc boinc       100 Mar  5 17:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 18:57:29] -rwxr-xr-x. 1 boinc boinc      7986 Mar  5 17:25 run_atlas
[2026-03-05 18:57:29] -rw-r--r--. 1 boinc boinc       105 Mar  5 17:25 job.xml
[2026-03-05 18:57:29] -rw-r--r--. 1 boinc boinc      6708 Mar  5 17:25 init_data.xml
[2026-03-05 18:57:29] -rw-r--r--. 2 boinc boinc 299384945 Mar  5 17:25 EVNT.48717224._000027.pool.root.1
[2026-03-05 18:57:29] -rw-r--r--. 2 boinc boinc     15845 Mar  5 17:25 start_atlas.sh
[2026-03-05 18:57:29] drwxrwx--x. 2 boinc boinc      4096 Mar  5 17:25 shared
[2026-03-05 18:57:29] -rw-r--r--. 2 boinc boinc    597957 Mar  5 17:25 input.tar.gz
[2026-03-05 18:57:29] -rw-r--r--. 1 boinc boinc         0 Mar  5 17:25 boinc_lockfile
[2026-03-05 18:57:29] -rw-r--r--. 1 boinc boinc      2593 Mar  5 17:25 pandaJob.out
[2026-03-05 18:57:29] -rw-------. 1 boinc boinc    998462 Mar  5 17:26 agis_schedconf.cvmfs.json
[2026-03-05 18:57:29] -rw-------. 1 boinc boinc   1521291 Mar  5 17:26 agis_ddmendpoints.agis.ALL.json
[2026-03-05 18:57:29] -rw-------. 1 boinc boinc       445 Mar  5 17:26 workernode_map.json
[2026-03-05 18:57:29] drwx------. 5 boinc boinc      4096 Mar  5 17:26 pilot3
[2026-03-05 18:57:29] -rw-r--r--. 1 boinc boinc       530 Mar  5 18:55 boinc_task_state.xml
[2026-03-05 18:57:29] -rw-------. 1 boinc boinc 206560449 Mar  5 18:55 HITS.48973452._000655.pool.root.1
[2026-03-05 18:57:29] -rw-------. 1 boinc boinc        95 Mar  5 18:55 pilot_heartbeat.json
[2026-03-05 18:57:29] -rw-------. 1 boinc boinc      1031 Mar  5 18:55 memory_monitor_summary.json
[2026-03-05 18:57:29] -rw-------. 1 boinc boinc    269692 Mar  5 18:55 log.48973452._000655.job.log.tgz.1
[2026-03-05 18:57:29] -rw-------. 1 boinc boinc      6352 Mar  5 18:55 heartbeat.json
[2026-03-05 18:57:29] -rw-------. 1 boinc boinc      5087 Mar  5 18:56 pilotlog.txt
[2026-03-05 18:57:29] -rw-------. 1 boinc boinc    778271 Mar  5 18:56 log.48973452._000655.job.log.1
[2026-03-05 18:57:29] -rw-------. 1 boinc boinc       357 Mar  5 18:56 output.list
[2026-03-05 18:57:29] -rw-r--r--. 1 boinc boinc       620 Mar  5 18:56 runtime_log
[2026-03-05 18:57:29] -rw-------. 1 boinc boinc   1064960 Mar  5 18:56 result.tar.gz
[2026-03-05 18:57:29] -rw-------. 1 boinc boinc       663 Mar  5 18:56 XVyMDmdU5H9n9Rq4apOajLDm4fhM0noT9bVooX4SDmGEJLDmRbE0yn.diag
[2026-03-05 18:57:29] -rw-r--r--. 1 boinc boinc      9221 Mar  5 18:56 runtime_log.err
[2026-03-05 18:57:29] -rw-r--r--. 1 boinc boinc        27 Mar  5 18:57 wrapper_checkpoint.txt
[2026-03-05 18:57:29] -rw-r--r--. 1 boinc boinc      8192 Mar  5 18:57 boinc_mmap_file
[2026-03-05 18:57:29] -rw-r--r--. 1 boinc boinc      1893 Mar  5 18:57 stderr.txt
[2026-03-05 18:57:29] HITS file was successfully produced:
[2026-03-05 18:57:29] -rw-------. 1 boinc boinc 206560449 Mar  5 18:55 shared/HITS.pool.root.1
[2026-03-05 18:57:29]  *** Contents of shared directory: ***
[2026-03-05 18:57:29] total 495740
[2026-03-05 18:57:29] -rw-r--r--. 2 boinc boinc 299384945 Mar  5 17:25 ATLAS.root_0
[2026-03-05 18:57:29] -rw-r--r--. 2 boinc boinc     15845 Mar  5 17:25 start_atlas.sh
[2026-03-05 18:57:29] -rw-r--r--. 2 boinc boinc    597957 Mar  5 17:25 input.tar.gz
[2026-03-05 18:57:29] -rw-------. 1 boinc boinc 206560449 Mar  5 18:55 HITS.pool.root.1
[2026-03-05 18:57:29] -rw-------. 1 boinc boinc   1064960 Mar  5 18:56 result.tar.gz
18:57:31 (163524): run_atlas exited; CPU time 20572.662571
18:57:31 (163524): called boinc_finish(0)

</stderr_txt>
]]>

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