Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:30:07 (886504): wrapper (7.7.26015): starting
19:30:07 (886504): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 19:30:07] Arguments: --nthreads 4
[2026-03-09 19:30:07] Threads: 4
[2026-03-09 19:30:07] Checking for CVMFS
[2026-03-09 19:30:07] No cvmfs_config command found, will try listing directly
[2026-03-09 19:30:07] CVMFS is ok
[2026-03-09 19:30:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 19:30:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 19:30:07] Further information can be found at the LHC@home message board.
[2026-03-09 19:30:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 19:30:07] Checking for apptainer binary...
[2026-03-09 19:30:07] which: no apptainer in ((null))
[2026-03-09 19:30:07] apptainer is not installed, using version from CVMFS
[2026-03-09 19:30:07] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 19:30:07] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot8/slots/3/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut07.grid.cesnet.cz
[2026-03-09 19:30:07] apptainer works
[2026-03-09 19:30:07] Set ATHENA_PROC_NUMBER=4
[2026-03-09 19:30:07] Set ATHENA_CORE_NUMBER=4
[2026-03-09 19:30:07] Starting ATLAS job with PandaID=7040370344
[2026-03-09 19:30:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot8/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 23:16:30]  *** The last 200 lines of the pilot log: ***
[2026-03-09 23:16:30] 2026-03-09 22:15:38,880 | INFO     | reading metadata from: /var/lib/boinc/var/slot8/slots/3/PanDA_Pilot-7040370344/jobReport.json
[2026-03-09 23:16:30] 2026-03-09 22:15:38,882 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot8/slots/3/workernode_map.json
[2026-03-09 23:16:30] 2026-03-09 22:15:38,882 | INFO     | this job has now completed (state=finished)
[2026-03-09 23:16:30] 2026-03-09 22:15:38,882 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-09 23:16:30] 2026-03-09 22:15:38,883 | INFO     | log transfer has been attempted: DONE
[2026-03-09 23:16:30] 2026-03-09 22:15:38,883 | INFO     | job 7040370344 has finished - writing final server update
[2026-03-09 23:16:30] 2026-03-09 22:15:38,883 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_464055/.job.ad'
[2026-03-09 23:16:30] 2026-03-09 22:15:38,883 | INFO     | total number of processed events: 400 (read)
[2026-03-09 23:16:30] 2026-03-09 22:15:38,895 | INFO     | using path: /var/lib/boinc/var/slot8/slots/3/PanDA_Pilot-7040370344/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 23:16:30] 2026-03-09 22:15:38,896 | INFO     | extracted standard info from prmon json
[2026-03-09 23:16:30] 2026-03-09 22:15:38,896 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 23:16:30] 2026-03-09 22:15:38,896 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 23:16:30] 2026-03-09 22:15:38,897 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 23:16:30] 2026-03-09 22:15:38,897 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 23:16:30] 2026-03-09 22:15:38,901 | INFO     | fitting pss+swap vs Time
[2026-03-09 23:16:30] 2026-03-09 22:15:38,902 | INFO     | sum of square deviations: 3301699115.0
[2026-03-09 23:16:30] 2026-03-09 22:15:38,903 | INFO     | sum of deviations: 16406895194.999994
[2026-03-09 23:16:30] 2026-03-09 22:15:38,903 | INFO     | mean x: 1773087806.5
[2026-03-09 23:16:30] 2026-03-09 22:15:38,903 | INFO     | mean y: 2328716.4
[2026-03-09 23:16:30] 2026-03-09 22:15:38,903 | INFO     | intersect: -8808548592.381641
[2026-03-09 23:16:30] 2026-03-09 22:15:38,904 | INFO     | chi2: 1.4364734902014094
[2026-03-09 23:16:30] 2026-03-09 22:15:38,904 | INFO     | sum of square deviations: 3081657780.0
[2026-03-09 23:16:30] 2026-03-09 22:15:38,906 | INFO     | sum of deviations: 16010492977.999998
[2026-03-09 23:16:30] 2026-03-09 22:15:38,906 | INFO     | mean x: 1773087654.0
[2026-03-09 23:16:30] 2026-03-09 22:15:38,906 | INFO     | mean y: 2328441.418604651
[2026-03-09 23:16:30] 2026-03-09 22:15:38,906 | INFO     | intersect: -9209598858.875425
[2026-03-09 23:16:30] 2026-03-09 22:15:38,906 | INFO     | chi2: 1.4372271466749764
[2026-03-09 23:16:30] 2026-03-09 22:15:38,906 | INFO     | current chi2=1.4372271466749764 (change=-0.05246574188162671 %)
[2026-03-09 23:16:30] 2026-03-09 22:15:38,906 | INFO     | right removable region: 214
[2026-03-09 23:16:30] 2026-03-09 22:15:38,907 | INFO     | sum of square deviations: 3081657780.0
[2026-03-09 23:16:30] 2026-03-09 22:15:38,908 | INFO     | sum of deviations: -12623669400.000002
[2026-03-09 23:16:30] 2026-03-09 22:15:38,908 | INFO     | mean x: 1773087959.0
[2026-03-09 23:16:30] 2026-03-09 22:15:38,909 | INFO     | mean y: 2348598.1209302326
[2026-03-09 23:16:30] 2026-03-09 22:15:38,909 | INFO     | intersect: 7265606821.276637
[2026-03-09 23:16:30] 2026-03-09 22:15:38,909 | INFO     | chi2: 0.037870989342210885
[2026-03-09 23:16:30] 2026-03-09 22:15:38,909 | INFO     | current chi2=0.037870989342210885 (change=97.363613766593 %)
[2026-03-09 23:16:30] 2026-03-09 22:15:38,910 | INFO     | sum of square deviations: 2871616632.5
[2026-03-09 23:16:30] 2026-03-09 22:15:38,911 | INFO     | sum of deviations: -11439879518.499998
[2026-03-09 23:16:30] 2026-03-09 22:15:38,911 | INFO     | mean x: 1773088111.5
[2026-03-09 23:16:30] 2026-03-09 22:15:38,911 | INFO     | mean y: 2347728.5761904763
[2026-03-09 23:16:30] 2026-03-09 22:15:38,911 | INFO     | intersect: 7065934887.696982
[2026-03-09 23:16:30] 2026-03-09 22:15:38,912 | INFO     | chi2: 0.0366276018501189
[2026-03-09 23:16:30] 2026-03-09 22:15:38,912 | INFO     | current chi2=0.0366276018501189 (change=3.2832189327203767 %)
[2026-03-09 23:16:30] 2026-03-09 22:15:38,912 | INFO     | left removable region: 20
[2026-03-09 23:16:30] 2026-03-09 22:15:38,912 | INFO     | sum of square deviations: 2263977332.5
[2026-03-09 23:16:30] 2026-03-09 22:15:38,913 | INFO     | sum of deviations: -5788282375.000001
[2026-03-09 23:16:30] 2026-03-09 22:15:38,914 | INFO     | mean x: 1773088233.5
[2026-03-09 23:16:30] 2026-03-09 22:15:38,914 | INFO     | mean y: 2343467.618556701
[2026-03-09 23:16:30] 2026-03-09 22:15:38,914 | INFO     | intersect: 4535575856.45827
[2026-03-09 23:16:30] 2026-03-09 22:15:38,914 | INFO     | chi2: 0.028003597390353966
[2026-03-09 23:16:30] 2026-03-09 22:15:38,914 | INFO     | current memory leak: -2.56 B/s (using 194 data points, chi2=0.03)
[2026-03-09 23:16:30] 2026-03-09 22:15:38,915 | INFO     | could have reported an average CPU frequency of 2501 MHz (11 samples)
[2026-03-09 23:16:30] 2026-03-09 22:15:38,915 | INFO     | ..............................
[2026-03-09 23:16:30] 2026-03-09 22:15:38,915 | INFO     | . Timing measurements:
[2026-03-09 23:16:30] 2026-03-09 22:15:38,915 | INFO     | . get job = 0 s
[2026-03-09 23:16:30] 2026-03-09 22:15:38,915 | INFO     | . initial setup = 25 s
[2026-03-09 23:16:30] 2026-03-09 22:15:38,916 | INFO     | . payload setup = 24 s
[2026-03-09 23:16:30] 2026-03-09 22:15:38,916 | INFO     | . stage-in = 0 s
[2026-03-09 23:16:30] 2026-03-09 22:15:38,916 | INFO     | . payload execution = 13432 s
[2026-03-09 23:16:30] 2026-03-09 22:15:38,916 | INFO     | . stage-out = 1 s
[2026-03-09 23:16:30] 2026-03-09 22:15:38,916 | INFO     | . log creation = 0 s
[2026-03-09 23:16:30] 2026-03-09 22:15:38,916 | INFO     | ..............................
[2026-03-09 23:16:30] 2026-03-09 22:15:39,381 | INFO     | 
[2026-03-09 23:16:30] 2026-03-09 22:15:39,381 | INFO     | job summary report
[2026-03-09 23:16:30] 2026-03-09 22:15:39,381 | INFO     | --------------------------------------------------
[2026-03-09 23:16:30] 2026-03-09 22:15:39,381 | INFO     | PanDA job id: 7040370344
[2026-03-09 23:16:30] 2026-03-09 22:15:39,381 | INFO     | task id: 48973452
[2026-03-09 23:16:30] 2026-03-09 22:15:39,381 | INFO     | errors: (none)
[2026-03-09 23:16:30] 2026-03-09 22:15:39,381 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 23:16:30] 2026-03-09 22:15:39,382 | INFO     | pilot state: finished 
[2026-03-09 23:16:30] 2026-03-09 22:15:39,382 | INFO     | transexitcode: 0
[2026-03-09 23:16:30] 2026-03-09 22:15:39,382 | INFO     | exeerrorcode: 0
[2026-03-09 23:16:30] 2026-03-09 22:15:39,382 | INFO     | exeerrordiag: 
[2026-03-09 23:16:30] 2026-03-09 22:15:39,382 | INFO     | exitcode: 0
[2026-03-09 23:16:30] 2026-03-09 22:15:39,382 | INFO     | exitmsg: OK
[2026-03-09 23:16:30] 2026-03-09 22:15:39,382 | INFO     | cpuconsumptiontime: 48701 s
[2026-03-09 23:16:30] 2026-03-09 22:15:39,382 | INFO     | nevents: 400
[2026-03-09 23:16:30] 2026-03-09 22:15:39,382 | INFO     | neventsw: 0
[2026-03-09 23:16:30] 2026-03-09 22:15:39,382 | INFO     | pid: 895530
[2026-03-09 23:16:30] 2026-03-09 22:15:39,382 | INFO     | pgrp: 895530
[2026-03-09 23:16:30] 2026-03-09 22:15:39,382 | INFO     | corecount: 4
[2026-03-09 23:16:30] 2026-03-09 22:15:39,383 | INFO     | event service: False
[2026-03-09 23:16:30] 2026-03-09 22:15:39,383 | INFO     | sizes: {0: 2279899, 1: 2280303, 12: 2280303, 13460: 2310672, 13462: 2319746, 13465: 2319912}
[2026-03-09 23:16:30] 2026-03-09 22:15:39,383 | INFO     | --------------------------------------------------
[2026-03-09 23:16:30] 2026-03-09 22:15:39,383 | INFO     | 
[2026-03-09 23:16:30] 2026-03-09 22:15:39,383 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot8/slots/3
[2026-03-09 23:16:30] 2026-03-09 22:15:39,413 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 23:16:30] 2026-03-09 22:15:39,414 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 23:16:30] 2026-03-09 22:15:39,414 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 23:16:30] 2026-03-09 22:15:39,414 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 23:16:30] 2026-03-09 22:15:39,414 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 23:16:30] 2026-03-09 22:15:39,414 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 23:16:30] 2026-03-09 22:15:39,414 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 23:16:30] 2026-03-09 22:15:39,414 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 23:16:30] 2026-03-09 22:15:39,414 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 23:16:30] 2026-03-09 22:15:39,414 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 23:16:30] 2026-03-09 22:15:39,414 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 23:16:30] 2026-03-09 22:15:39,415 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 23:16:30] 2026-03-09 22:15:39,415 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 23:16:30] 2026-03-09 22:15:39,415 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 23:16:30] 2026-03-09 22:15:39,415 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 23:16:30] 2026-03-09 22:15:39,415 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 23:16:30] 2026-03-09 22:15:39,415 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 23:16:30] 2026-03-09 22:15:39,415 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 23:16:30] 2026-03-09 22:15:39,415 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 23:16:30] 2026-03-09 22:15:39,415 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 23:16:30] 2026-03-09 22:15:39,416 | INFO     | job 7040370344 has completed (purged errors)
[2026-03-09 23:16:30] 2026-03-09 22:15:39,416 | INFO     | overall cleanup function is called
[2026-03-09 23:16:30] 2026-03-09 22:15:39,760 | INFO     | PID=890500 has CPU usage=15.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-09 23:16:30] 2026-03-09 22:15:39,760 | INFO     | .. there are 15 such processes running
[2026-03-09 23:16:30] 2026-03-09 22:15:40,426 | INFO     | --- collectZombieJob: --- 10, [895530]
[2026-03-09 23:16:30] 2026-03-09 22:15:40,426 | INFO     | zombie collector waiting for pid 895530
[2026-03-09 23:16:30] 2026-03-09 22:15:40,426 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 23:16:30] 2026-03-09 22:15:40,426 | INFO     | collected zombie processes
[2026-03-09 23:16:30] 2026-03-09 22:15:40,426 | INFO     | will attempt to kill all subprocesses of pid=895530
[2026-03-09 23:16:30] 2026-03-09 22:15:40,791 | INFO     | process IDs to be killed: [895530] (in reverse order)
[2026-03-09 23:16:30] 2026-03-09 22:15:40,917 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 23:16:30] 2026-03-09 22:15:40,917 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 23:16:30] 2026-03-09 22:15:40,928 | INFO     | did not find any defunct processes belonging to 895530
[2026-03-09 23:16:30] 2026-03-09 22:15:40,939 | INFO     | did not find any defunct processes belonging to 895530
[2026-03-09 23:16:30] 2026-03-09 22:15:40,940 | INFO     | ready for new job
[2026-03-09 23:16:30] 2026-03-09 22:15:40,940 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 23:16:30] 2026-03-09 22:15:40,943 | INFO     | **************************************
[2026-03-09 23:16:30] 2026-03-09 22:15:40,943 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 23:16:30] 2026-03-09 22:15:40,943 | INFO     | **************************************
[2026-03-09 23:16:30] 2026-03-09 22:15:40,944 | INFO     | 
[2026-03-09 23:16:30] 2026-03-09 22:15:40,947 | INFO     | architecture information:
[2026-03-09 23:16:30] 2026-03-09 22:15:40,948 | INFO     | executing command: cat /etc/os-release
[2026-03-09 23:16:30] 2026-03-09 22:15:40,964 | INFO     | cat /etc/os-release:
[2026-03-09 23:16:30] NAME="CentOS Linux"
[2026-03-09 23:16:30] VERSION="7 (Core)"
[2026-03-09 23:16:30] ID="centos"
[2026-03-09 23:16:30] ID_LIKE="rhel fedora"
[2026-03-09 23:16:30] VERSION_ID="7"
[2026-03-09 23:16:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 23:16:30] ANSI_COLOR="0;31"
[2026-03-09 23:16:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 23:16:30] HOME_URL="https://www.centos.org/"
[2026-03-09 23:16:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 23:16:30] 
[2026-03-09 23:16:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 23:16:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 23:16:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 23:16:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 23:16:30] 
[2026-03-09 23:16:30] 2026-03-09 22:15:40,964 | INFO     | **************************************
[2026-03-09 23:16:30] 2026-03-09 22:15:41,468 | INFO     | executing command: df -mP /var/lib/boinc/var/slot8/slots/3
[2026-03-09 23:16:30] 2026-03-09 22:15:41,497 | INFO     | sufficient remaining disk space (20249051136 B)
[2026-03-09 23:16:30] 2026-03-09 22:15:41,498 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 23:16:30] 2026-03-09 22:15:41,498 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 23:16:30] 2026-03-09 22:15:41,498 | INFO     | update_server=False
[2026-03-09 23:16:30] 2026-03-09 22:15:41,498 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 23:16:30] 2026-03-09 22:15:41,603 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 23:16:30] 2026-03-09 22:15:41,833 | INFO     | all payload control threads have been joined
[2026-03-09 23:16:30] 2026-03-09 22:15:41,837 | INFO     | all data control threads have been joined
[2026-03-09 23:16:30] 2026-03-09 22:15:42,276 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 23:16:30] 2026-03-09 22:15:42,276 | INFO     | aborting loop
[2026-03-09 23:16:30] 2026-03-09 22:15:42,503 | INFO     | [job] retrieve thread has finished
[2026-03-09 23:16:30] 2026-03-09 22:15:42,597 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 23:16:30] 2026-03-09 22:15:42,677 | INFO     | [data] copytool_in thread has finished
[2026-03-09 23:16:30] 2026-03-09 22:15:42,835 | INFO     | all job control threads have been joined
[2026-03-09 23:16:30] 2026-03-09 22:15:42,838 | INFO     | [payload] control thread has finished
[2026-03-09 23:16:30] 2026-03-09 22:15:42,842 | INFO     | [data] control thread has finished
[2026-03-09 23:16:30] 2026-03-09 22:15:42,995 | INFO     | [payload] validate_post thread has finished
[2026-03-09 23:16:30] 2026-03-09 22:15:43,281 | INFO     | [job] job monitor thread has finished
[2026-03-09 23:16:30] 2026-03-09 22:15:43,309 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 23:16:30] 2026-03-09 22:15:43,608 | INFO     | [data] copytool_out thread has finished
[2026-03-09 23:16:30] 2026-03-09 22:15:43,725 | INFO     | [job] validate thread has finished
[2026-03-09 23:16:30] 2026-03-09 22:15:43,840 | INFO     | [job] control thread has finished
[2026-03-09 23:16:30] 2026-03-09 22:15:43,897 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 23:16:30] 2026-03-09 22:15:43,991 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 23:16:30] 2026-03-09 22:15:44,018 | INFO     | [payload] failed_post thread has finished
[2026-03-09 23:16:30] 2026-03-09 22:15:44,023 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 23:16:30] 2026-03-09 22:15:45,028 | INFO     | [job] queue monitor thread has finished
[2026-03-09 23:16:30] 2026-03-09 22:15:46,603 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 23:16:30] 2026-03-09 22:15:51,854 | INFO     | job.realtimelogging is not enabled
[2026-03-09 23:16:30] 2026-03-09 22:15:52,859 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 23:16:30] 2026-03-09 22:16:12,276 | INFO     | PID=890500 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-09 23:16:30] 2026-03-09 22:16:12,276 | INFO     | .. there are 15 such processes running
[2026-03-09 23:16:30] 2026-03-09 22:16:12,276 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 23:16:30] 2026-03-09 22:16:12,276 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 23:16:30] 2026-03-09 22:16:12,276 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 23:16:30] 2026-03-09 22:16:24,221 | INFO     | [monitor] cgroup control has ended
[2026-03-09 23:16:30] 2026-03-09 22:16:24,947 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23367347705664)>', '<ExcThread(monitor, started 23367110637312)>']
[2026-03-09 23:16:30] 2026-03-09 22:16:25,341 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 23:16:30] 2026-03-09 22:16:25,341 | INFO     | [monitor] control thread has ended
[2026-03-09 23:16:30] 2026-03-09 22:16:29,972 | INFO     | all workflow threads have been joined
[2026-03-09 23:16:30] 2026-03-09 22:16:29,972 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 23:16:30] 2026-03-09 22:16:29,972 | INFO     | traces error code: 0
[2026-03-09 23:16:30] 2026-03-09 22:16:29,972 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 23:16:30] 2026-03-09 22:16:30,159 [wrapper] ==== pilot stdout END ====
[2026-03-09 23:16:30] 2026-03-09 22:16:30,163 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 23:16:30] 2026-03-09 22:16:30,165 [wrapper] pilotpid: 890500
[2026-03-09 23:16:30] 2026-03-09 22:16:30,168 [wrapper] Pilot exit status: 0
[2026-03-09 23:16:30] 2026-03-09 22:16:30,194 [wrapper] pandaids: 7040370344
[2026-03-09 23:16:30] 2026-03-09 22:16:30,277 [wrapper] cleanup supervisor_pilot 1160004 890501
[2026-03-09 23:16:30] 2026-03-09 22:16:30,280 [wrapper] Test setup, not cleaning
[2026-03-09 23:16:30] 2026-03-09 22:16:30,283 [wrapper] apfmon messages muted
[2026-03-09 23:16:30] 2026-03-09 22:16:30,285 [wrapper] ==== wrapper stdout END ====
[2026-03-09 23:16:30] 2026-03-09 22:16:30,288 [wrapper] ==== wrapper stderr END ====
[2026-03-09 23:16:30]  *** Error codes and diagnostics ***
[2026-03-09 23:16:30]     "exeErrorCode": 0,
[2026-03-09 23:16:30]     "exeErrorDiag": "",
[2026-03-09 23:16:30]     "pilotErrorCode": 0,
[2026-03-09 23:16:30]     "pilotErrorDiag": "",
[2026-03-09 23:16:30]  *** Listing of results directory ***
[2026-03-09 23:16:30] total 502780
[2026-03-09 23:16:30] -rw-r--r--. 1 boinc boinc      5111 Mar  4 18:22 queuedata.json
[2026-03-09 23:16:30] -rw-r--r--. 1 boinc boinc    584627 Mar  4 18:22 pilot3.tar.gz
[2026-03-09 23:16:30] -rwx------. 1 boinc boinc     36322 Mar  4 18:22 runpilot2-wrapper.sh
[2026-03-09 23:16:30] -rw-r--r--. 1 boinc boinc       100 Mar  9 19:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 23:16:30] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 19:30 run_atlas
[2026-03-09 23:16:30] -rw-r--r--. 1 boinc boinc       105 Mar  9 19:30 job.xml
[2026-03-09 23:16:30] -rw-r--r--. 2 boinc boinc 296246438 Mar  9 19:30 EVNT.48717224._000007.pool.root.1
[2026-03-09 23:16:30] -rw-r--r--. 1 boinc boinc      6557 Mar  9 19:30 init_data.xml
[2026-03-09 23:16:30] -rw-r--r--. 2 boinc boinc     15845 Mar  9 19:30 start_atlas.sh
[2026-03-09 23:16:30] drwxrwx--x. 2 boinc boinc      4096 Mar  9 19:30 shared
[2026-03-09 23:16:30] -rw-r--r--. 2 boinc boinc    597951 Mar  9 19:30 input.tar.gz
[2026-03-09 23:16:30] -rw-r--r--. 1 boinc boinc         0 Mar  9 19:30 boinc_lockfile
[2026-03-09 23:16:30] -rw-r--r--. 1 boinc boinc      2592 Mar  9 19:30 pandaJob.out
[2026-03-09 23:16:30] -rw-------. 1 boinc boinc   1002738 Mar  9 19:30 agis_schedconf.cvmfs.json
[2026-03-09 23:16:30] -rw-------. 1 boinc boinc       451 Mar  9 19:31 workernode_map.json
[2026-03-09 23:16:30] drwx------. 5 boinc boinc      4096 Mar  9 19:31 pilot3
[2026-03-09 23:16:30] -rw-------. 1 boinc boinc 210131779 Mar  9 23:14 HITS.48973452._000156.pool.root.1
[2026-03-09 23:16:30] -rw-r--r--. 1 boinc boinc       530 Mar  9 23:15 boinc_task_state.xml
[2026-03-09 23:16:30] -rw-------. 1 boinc boinc        95 Mar  9 23:15 pilot_heartbeat.json
[2026-03-09 23:16:30] -rw-------. 1 boinc boinc      1030 Mar  9 23:15 memory_monitor_summary.json
[2026-03-09 23:16:30] -rw-------. 1 boinc boinc   1511578 Mar  9 23:15 agis_ddmendpoints.agis.ALL.json
[2026-03-09 23:16:30] -rw-------. 1 boinc boinc    382667 Mar  9 23:15 log.48973452._000156.job.log.tgz.1
[2026-03-09 23:16:30] -rw-------. 1 boinc boinc      6393 Mar  9 23:15 heartbeat.json
[2026-03-09 23:16:30] -rw-r--r--. 1 boinc boinc      8192 Mar  9 23:16 boinc_mmap_file
[2026-03-09 23:16:30] -rw-r--r--. 1 boinc boinc        28 Mar  9 23:16 wrapper_checkpoint.txt
[2026-03-09 23:16:30] -rw-------. 1 boinc boinc      4899 Mar  9 23:16 pilotlog.txt
[2026-03-09 23:16:30] -rw-------. 1 boinc boinc   1885649 Mar  9 23:16 log.48973452._000156.job.log.1
[2026-03-09 23:16:30] -rw-------. 1 boinc boinc       357 Mar  9 23:16 output.list
[2026-03-09 23:16:30] -rw-r--r--. 1 boinc boinc       620 Mar  9 23:16 runtime_log
[2026-03-09 23:16:30] -rw-------. 1 boinc boinc   2283520 Mar  9 23:16 result.tar.gz
[2026-03-09 23:16:30] -rw-r--r--. 1 boinc boinc      9188 Mar  9 23:16 runtime_log.err
[2026-03-09 23:16:30] -rw-------. 1 boinc boinc       665 Mar  9 23:16 SyPLDm964H9n9Rq4apOajLDm4fhM0noT9bVooX4SDmv6ILDmplHgUo.diag
[2026-03-09 23:16:30] -rw-r--r--. 1 boinc boinc     21172 Mar  9 23:16 stderr.txt
[2026-03-09 23:16:30] HITS file was successfully produced:
[2026-03-09 23:16:30] -rw-------. 1 boinc boinc 210131779 Mar  9 23:14 shared/HITS.pool.root.1
[2026-03-09 23:16:30]  *** Contents of shared directory: ***
[2026-03-09 23:16:30] total 497352
[2026-03-09 23:16:30] -rw-r--r--. 2 boinc boinc 296246438 Mar  9 19:30 ATLAS.root_0
[2026-03-09 23:16:30] -rw-r--r--. 2 boinc boinc     15845 Mar  9 19:30 start_atlas.sh
[2026-03-09 23:16:30] -rw-r--r--. 2 boinc boinc    597951 Mar  9 19:30 input.tar.gz
[2026-03-09 23:16:30] -rw-------. 1 boinc boinc 210131779 Mar  9 23:14 HITS.pool.root.1
[2026-03-09 23:16:30] -rw-------. 1 boinc boinc   2283520 Mar  9 23:16 result.tar.gz
23:16:31 (886504): run_atlas exited; CPU time 49238.321686
23:16:31 (886504): called boinc_finish(0)

</stderr_txt>
]]>

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