Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:39:54 (590403): wrapper (7.7.26015): starting
07:39:54 (590403): wrapper: running run_atlas (--nthreads 3)
[2026-03-05 07:39:54] Arguments: --nthreads 3
[2026-03-05 07:39:54] Threads: 3
[2026-03-05 07:39:54] Checking for CVMFS
[2026-03-05 07:39:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-05 07:39:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-05 07:39:56] Running cvmfs_config stat atlas.cern.ch
[2026-03-05 07:39:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-05 07:39:56] 2.9.2.0 12702 4089 80780 156906 3 50 30428852 36864000 0 130560 0 1604394 99.982 142107 10073 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-05 07:39:56] CVMFS is ok
[2026-03-05 07:39:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-05 07:39:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-05 07:39:56] Further information can be found at the LHC@home message board.
[2026-03-05 07:39:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 07:39:56] Checking for apptainer binary...
[2026-03-05 07:39:56] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-05 07:39:56] Running /usr/bin/apptainer --version
[2026-03-05 07:39:56] apptainer version 1.4.1-1.1
[2026-03-05 07:39:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 07:39:56] thA349
[2026-03-05 07:39:56] apptainer works
[2026-03-05 07:39:56] Set ATHENA_PROC_NUMBER=3
[2026-03-05 07:39:56] Set ATHENA_CORE_NUMBER=3
[2026-03-05 07:39:56] Starting ATLAS job with PandaID=7030659078
[2026-03-05 07:39:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 09:15:36]  *** The last 200 lines of the pilot log: ***
[2026-03-05 09:15:36] 2026-03-05 08:15:05,901 | INFO     | cat /etc/os-release:
[2026-03-05 09:15:36] NAME="CentOS Linux"
[2026-03-05 09:15:36] VERSION="7 (Core)"
[2026-03-05 09:15:36] ID="centos"
[2026-03-05 09:15:36] ID_LIKE="rhel fedora"
[2026-03-05 09:15:36] VERSION_ID="7"
[2026-03-05 09:15:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 09:15:36] ANSI_COLOR="0;31"
[2026-03-05 09:15:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 09:15:36] HOME_URL="https://www.centos.org/"
[2026-03-05 09:15:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 09:15:36] 
[2026-03-05 09:15:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 09:15:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 09:15:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 09:15:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 09:15:36] 
[2026-03-05 09:15:36] 2026-03-05 08:15:05,901 | INFO     | **************************************
[2026-03-05 09:15:36] 2026-03-05 08:15:06,404 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-05 09:15:36] 2026-03-05 08:15:06,417 | INFO     | sufficient remaining disk space (272427384832 B)
[2026-03-05 09:15:36] 2026-03-05 08:15:06,417 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 09:15:36] 2026-03-05 08:15:06,417 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 09:15:36] 2026-03-05 08:15:06,417 | INFO     | update_server=False
[2026-03-05 09:15:36] 2026-03-05 08:15:06,417 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 09:15:36] 2026-03-05 08:15:06,418 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 09:15:36] 2026-03-05 08:15:06,418 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 09:15:36] 2026-03-05 08:15:06,832 | INFO     | job.realtimelogging is not enabled
[2026-03-05 09:15:36] 2026-03-05 08:15:06,963 | INFO     | all payload control threads have been joined
[2026-03-05 09:15:36] 2026-03-05 08:15:07,139 | INFO     | all job control threads have been joined
[2026-03-05 09:15:36] 2026-03-05 08:15:07,290 | INFO     | all data control threads have been joined
[2026-03-05 09:15:36] 2026-03-05 08:15:07,423 | INFO     | [job] retrieve thread has finished
[2026-03-05 09:15:36] 2026-03-05 08:15:07,423 | INFO     | [job] queue monitor thread has finished
[2026-03-05 09:15:36] 2026-03-05 08:15:07,487 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 09:15:36] 2026-03-05 08:15:07,759 | INFO     | [payload] failed_post thread has finished
[2026-03-05 09:15:36] 2026-03-05 08:15:07,838 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 09:15:36] 2026-03-05 08:15:07,969 | INFO     | [payload] control thread has finished
[2026-03-05 09:15:36] 2026-03-05 08:15:08,145 | INFO     | [job] control thread has finished
[2026-03-05 09:15:36] 2026-03-05 08:15:08,158 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 09:15:36] 2026-03-05 08:15:08,296 | INFO     | [data] control thread has finished
[2026-03-05 09:15:36] 2026-03-05 08:15:08,386 | INFO     | [payload] validate_post thread has finished
[2026-03-05 09:15:36] 2026-03-05 08:15:08,538 | INFO     | [job] validate thread has finished
[2026-03-05 09:15:36] 2026-03-05 08:15:08,581 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 09:15:36] 2026-03-05 08:15:08,621 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 09:15:36] 2026-03-05 08:15:08,783 | INFO     | [data] copytool_in thread has finished
[2026-03-05 09:15:36] 2026-03-05 08:15:09,493 | INFO     | [data] copytool_out thread has finished
[2026-03-05 09:15:36] 2026-03-05 08:15:10,425 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 09:15:36] 2026-03-05 08:15:12,495 | WARNING  | process 598886 can no longer be monitored (due to stat problems) - aborting
[2026-03-05 09:15:36] 2026-03-05 08:15:12,514 | INFO     | [monitor] cgroup control has ended
[2026-03-05 09:15:36] 2026-03-05 08:15:12,522 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 09:15:36] 2026-03-05 08:15:12,557 | INFO     | number of running child processes to parent process 598886: 1
[2026-03-05 09:15:36] 2026-03-05 08:15:12,557 | INFO     | maximum number of monitored processes: 6
[2026-03-05 09:15:36] 2026-03-05 08:15:12,557 | INFO     | aborting job monitoring since job object (job id=7030659078) has expired
[2026-03-05 09:15:36] 2026-03-05 08:15:12,557 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 09:15:36] 2026-03-05 08:15:12,557 | INFO     | will abort loop
[2026-03-05 09:15:36] 2026-03-05 08:15:13,563 | INFO     | [job] job monitor thread has finished
[2026-03-05 09:15:36] 2026-03-05 08:15:15,073 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139892260419392)>', '<ExcThread(monitor, started 139891614660352)>']
[2026-03-05 09:15:36] 2026-03-05 08:15:20,099 | INFO     | all workflow threads have been joined
[2026-03-05 09:15:36] 2026-03-05 08:15:20,099 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 09:15:36] 2026-03-05 08:15:20,099 | INFO     | traces error code: 0
[2026-03-05 09:15:36] 2026-03-05 08:15:20,100 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 09:15:36] 2026-03-05 08:15:36,037 | INFO     | PID=594454 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-05 09:15:36] 2026-03-05 08:15:36,037 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 09:15:36] 2026-03-05 08:15:36,037 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 09:15:36] 2026-03-05 08:15:36,038 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 09:15:36] 2026-03-05 08:15:36,038 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 09:15:36] 2026-03-05 08:15:36,038 | CRITICAL | thread 'MainThread' is not alive
[2026-03-05 09:15:36] 2026-03-05 08:15:36,038 | INFO     | [monitor] control thread has ended
[2026-03-05 09:15:36] 2026-03-05 08:15:36,083 [wrapper] ==== pilot stdout END ====
[2026-03-05 09:15:36] 2026-03-05 08:15:36,086 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 09:15:36] 2026-03-05 08:15:36,089 [wrapper] pilotpid: 594454
[2026-03-05 09:15:36] 2026-03-05 08:15:36,091 [wrapper] Pilot exit status: 0
[2026-03-05 09:15:36] 2026-03-05 08:15:36,099 [wrapper] pandaids: 7030659078
[2026-03-05 09:15:36] 2026-03-05 08:15:36,116 [wrapper] cleanup supervisor_pilot  604695 594455
[2026-03-05 09:15:36] 2026-03-05 08:15:36,118 [wrapper] Test setup, not cleaning
[2026-03-05 09:15:36] 2026-03-05 08:15:36,121 [wrapper] apfmon messages muted
[2026-03-05 09:15:36] 2026-03-05 08:15:36,123 [wrapper] ==== wrapper stdout END ====
[2026-03-05 09:15:36] 2026-03-05 08:15:36,125 [wrapper] ==== wrapper stderr END ====
[2026-03-05 09:15:36]  *** Error codes and diagnostics ***
[2026-03-05 09:15:36]     "exeErrorCode": 0,
[2026-03-05 09:15:36]     "exeErrorDiag": "",
[2026-03-05 09:15:36]     "pilotErrorCode": 0,
[2026-03-05 09:15:36]     "pilotErrorDiag": "",
[2026-03-05 09:15:36]  *** Listing of results directory ***
[2026-03-05 09:15:36] total 505116
[2026-03-05 09:15:36] -rw-r--r-- 1 boinc boinc    584627 Feb 26 13:16 pilot3.tar.gz
[2026-03-05 09:15:36] -rwx------ 1 boinc boinc     36322 Feb 26 13:16 runpilot2-wrapper.sh
[2026-03-05 09:15:36] -rw-r--r-- 1 boinc boinc      5111 Feb 26 13:17 queuedata.json
[2026-03-05 09:15:36] -rw-r--r-- 1 boinc boinc       100 Mar  5 07:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 09:15:36] -rwxr-xr-x 1 boinc boinc      7986 Mar  5 07:39 run_atlas
[2026-03-05 09:15:36] -rw-r--r-- 1 boinc boinc       105 Mar  5 07:39 job.xml
[2026-03-05 09:15:36] -rw-r--r-- 2 boinc boinc 289699967 Mar  5 07:39 EVNT.48220085._000227.pool.root.1
[2026-03-05 09:15:36] -rw-r--r-- 2 boinc boinc    597963 Mar  5 07:39 input.tar.gz
[2026-03-05 09:15:36] -rw-r--r-- 2 boinc boinc     15845 Mar  5 07:39 start_atlas.sh
[2026-03-05 09:15:36] drwxrwx--x 2 boinc boinc      4096 Mar  5 07:39 shared
[2026-03-05 09:15:36] -rw-r--r-- 1 boinc boinc         0 Mar  5 07:39 boinc_setup_complete
[2026-03-05 09:15:36] -rw-r--r-- 1 boinc boinc      6447 Mar  5 07:39 init_data.xml
[2026-03-05 09:15:36] -rw-r--r-- 1 boinc boinc         0 Mar  5 07:39 boinc_lockfile
[2026-03-05 09:15:36] -rw-r--r-- 1 boinc boinc      2567 Mar  5 07:39 pandaJob.out
[2026-03-05 09:15:36] -rw------- 1 boinc boinc    997749 Mar  5 07:40 agis_schedconf.cvmfs.json
[2026-03-05 09:15:36] -rw------- 1 boinc boinc   1521291 Mar  5 07:40 agis_ddmendpoints.agis.ALL.json
[2026-03-05 09:15:36] -rw------- 1 boinc boinc       423 Mar  5 07:40 workernode_map.json
[2026-03-05 09:15:36] drwx------ 5 boinc boinc      4096 Mar  5 07:40 pilot3
[2026-03-05 09:15:36] -rw------- 1 boinc boinc 221416864 Mar  5 09:14 HITS.48838416._005396.pool.root.1
[2026-03-05 09:15:36] -rw-r--r-- 1 boinc boinc       529 Mar  5 09:14 boinc_task_state.xml
[2026-03-05 09:15:36] -rw------- 1 boinc boinc      1021 Mar  5 09:15 memory_monitor_summary.json
[2026-03-05 09:15:36] -rw------- 1 boinc boinc    272752 Mar  5 09:15 log.48838416._005396.job.log.tgz.1
[2026-03-05 09:15:36] -rw------- 1 boinc boinc      6302 Mar  5 09:15 heartbeat.json
[2026-03-05 09:15:36] -rw-r--r-- 1 boinc boinc      8192 Mar  5 09:15 boinc_mmap_file
[2026-03-05 09:15:36] -rw-r--r-- 1 boinc boinc        27 Mar  5 09:15 wrapper_checkpoint.txt
[2026-03-05 09:15:36] -rw------- 1 boinc boinc       816 Mar  5 09:15 pilotlog.txt
[2026-03-05 09:15:36] -rw------- 1 boinc boinc        95 Mar  5 09:15 pilot_heartbeat.json
[2026-03-05 09:15:36] -rw------- 1 boinc boinc    828198 Mar  5 09:15 log.48838416._005396.job.log.1
[2026-03-05 09:15:36] -rw------- 1 boinc boinc       357 Mar  5 09:15 output.list
[2026-03-05 09:15:36] -rw-r--r-- 1 boinc boinc       620 Mar  5 09:15 runtime_log
[2026-03-05 09:15:36] -rw------- 1 boinc boinc   1116160 Mar  5 09:15 result.tar.gz
[2026-03-05 09:15:36] -rw-r--r-- 1 boinc boinc      8896 Mar  5 09:15 runtime_log.err
[2026-03-05 09:15:36] -rw------- 1 boinc boinc       657 Mar  5 09:15 ataNDmYTpF9n9Rq4apOajLDm4fhM0noT9bVooX4SDmz10KDmMKzZTn.diag
[2026-03-05 09:15:36] -rw-r--r-- 1 boinc boinc      9599 Mar  5 09:15 stderr.txt
[2026-03-05 09:15:36] HITS file was successfully produced:
[2026-03-05 09:15:36] -rw------- 1 boinc boinc 221416864 Mar  5 09:14 shared/HITS.pool.root.1
[2026-03-05 09:15:36]  *** Contents of shared directory: ***
[2026-03-05 09:15:36] total 500840
[2026-03-05 09:15:36] -rw-r--r-- 2 boinc boinc 289699967 Mar  5 07:39 ATLAS.root_0
[2026-03-05 09:15:36] -rw-r--r-- 2 boinc boinc    597963 Mar  5 07:39 input.tar.gz
[2026-03-05 09:15:36] -rw-r--r-- 2 boinc boinc     15845 Mar  5 07:39 start_atlas.sh
[2026-03-05 09:15:36] -rw------- 1 boinc boinc 221416864 Mar  5 09:14 HITS.pool.root.1
[2026-03-05 09:15:36] -rw------- 1 boinc boinc   1116160 Mar  5 09:15 result.tar.gz
09:15:37 (590403): run_atlas exited; CPU time 16459.435348
09:15:37 (590403): called boinc_finish(0)

</stderr_txt>
]]>

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