Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:29:28 (972727): wrapper (7.7.26015): starting
11:29:28 (972727): wrapper: running run_atlas (--nthreads 3)
[2026-03-05 11:29:28] Arguments: --nthreads 3
[2026-03-05 11:29:28] Threads: 3
[2026-03-05 11:29:28] Checking for CVMFS
[2026-03-05 11:29:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-05 11:29:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-05 11:29:29] Running cvmfs_config stat atlas.cern.ch
[2026-03-05 11:29:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-05 11:29:29] 2.9.2.0 3705770 11252 85828 156916 3 49 35719868 36864000 0 130560 0 3998633 99.974 499713 4978 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-05 11:29:29] CVMFS is ok
[2026-03-05 11:29:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-05 11:29:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-05 11:29:29] Further information can be found at the LHC@home message board.
[2026-03-05 11:29:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 11:29:29] Checking for apptainer binary...
[2026-03-05 11:29:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-05 11:29:29] Running /usr/bin/apptainer --version
[2026-03-05 11:29:29] apptainer version 1.4.1-1.1
[2026-03-05 11:29:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 11:29:29] atlasA223
[2026-03-05 11:29:29] apptainer works
[2026-03-05 11:29:29] Set ATHENA_PROC_NUMBER=3
[2026-03-05 11:29:29] Set ATHENA_CORE_NUMBER=3
[2026-03-05 11:29:29] Starting ATLAS job with PandaID=7040464783
[2026-03-05 11:29:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
12:06:45 (986167): wrapper (7.7.26015): starting
12:06:45 (986167): wrapper: running run_atlas (--nthreads 3)
[2026-03-05 12:06:45] Arguments: --nthreads 3
[2026-03-05 12:06:45] Threads: 3
[2026-03-05 12:06:45] This job has been restarted, cleaning up previous attempt
[2026-03-05 12:06:45] Checking for CVMFS
[2026-03-05 12:06:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-05 12:06:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-05 12:06:46] Running cvmfs_config stat atlas.cern.ch
[2026-03-05 12:06:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-05 12:06:46] 2.9.2.0 986355 0 29640 156917 3 1 35726756 36864000 0 130560 0 0 0.000 1336 47714 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-05 12:06:46] CVMFS is ok
[2026-03-05 12:06:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-05 12:06:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-05 12:06:46] Further information can be found at the LHC@home message board.
[2026-03-05 12:06:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 12:06:46] Checking for apptainer binary...
[2026-03-05 12:06:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-05 12:06:46] Running /usr/bin/apptainer --version
[2026-03-05 12:06:46] apptainer version 1.4.1-1.1
[2026-03-05 12:06:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 12:06:46] atlasA223
[2026-03-05 12:06:46] apptainer works
[2026-03-05 12:06:46] Set ATHENA_PROC_NUMBER=3
[2026-03-05 12:06:46] Set ATHENA_CORE_NUMBER=3
[2026-03-05 12:06:46] Starting ATLAS job with PandaID=7040464783
[2026-03-05 12:06:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 13:48:05]  *** The last 200 lines of the pilot log: ***
[2026-03-05 13:48:05] 2026-03-05 12:47:03,808 | INFO     | ready for new job
[2026-03-05 13:48:05] 2026-03-05 12:47:03,808 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 13:48:05] 2026-03-05 12:47:03,809 | INFO     | **************************************
[2026-03-05 13:48:05] 2026-03-05 12:47:03,809 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 13:48:05] 2026-03-05 12:47:03,809 | INFO     | **************************************
[2026-03-05 13:48:05] 2026-03-05 12:47:03,809 | INFO     | 
[2026-03-05 13:48:05] 2026-03-05 12:47:03,809 | INFO     | architecture information:
[2026-03-05 13:48:05] 2026-03-05 12:47:03,809 | INFO     | executing command: cat /etc/os-release
[2026-03-05 13:48:05] 2026-03-05 12:47:03,818 | INFO     | cat /etc/os-release:
[2026-03-05 13:48:05] NAME="CentOS Linux"
[2026-03-05 13:48:05] VERSION="7 (Core)"
[2026-03-05 13:48:05] ID="centos"
[2026-03-05 13:48:05] ID_LIKE="rhel fedora"
[2026-03-05 13:48:05] VERSION_ID="7"
[2026-03-05 13:48:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 13:48:05] ANSI_COLOR="0;31"
[2026-03-05 13:48:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 13:48:05] HOME_URL="https://www.centos.org/"
[2026-03-05 13:48:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 13:48:05] 
[2026-03-05 13:48:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 13:48:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 13:48:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 13:48:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 13:48:05] 
[2026-03-05 13:48:05] 2026-03-05 12:47:03,819 | INFO     | **************************************
[2026-03-05 13:48:05] 2026-03-05 12:47:04,322 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-05 13:48:05] 2026-03-05 12:47:04,333 | INFO     | sufficient remaining disk space (367028862976 B)
[2026-03-05 13:48:05] 2026-03-05 12:47:04,334 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 13:48:05] 2026-03-05 12:47:04,334 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 13:48:05] 2026-03-05 12:47:04,334 | INFO     | update_server=False
[2026-03-05 13:48:05] 2026-03-05 12:47:04,334 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 13:48:05] 2026-03-05 12:47:04,334 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 13:48:05] 2026-03-05 12:47:04,334 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 13:48:05] 2026-03-05 12:47:04,334 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-05 13:48:05] 2026-03-05 12:47:04,334 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 13:48:05] 2026-03-05 12:47:04,334 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 13:48:05] 2026-03-05 12:47:04,335 | INFO     | aborting loop
[2026-03-05 13:48:05] 2026-03-05 12:47:04,335 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 13:48:05] 2026-03-05 12:47:04,335 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 13:48:05] 2026-03-05 12:47:04,610 | INFO     | all data control threads have been joined
[2026-03-05 13:48:05] 2026-03-05 12:47:04,812 | INFO     | all payload control threads have been joined
[2026-03-05 13:48:05] 2026-03-05 12:47:05,339 | INFO     | [job] retrieve thread has finished
[2026-03-05 13:48:05] 2026-03-05 12:47:05,339 | INFO     | [job] queue monitor thread has finished
[2026-03-05 13:48:05] 2026-03-05 12:47:05,340 | INFO     | [job] job monitor thread has finished
[2026-03-05 13:48:05] 2026-03-05 12:47:05,396 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 13:48:05] 2026-03-05 12:47:05,463 | INFO     | [data] copytool_in thread has finished
[2026-03-05 13:48:05] 2026-03-05 12:47:05,611 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 13:48:05] 2026-03-05 12:47:05,616 | INFO     | [data] control thread has finished
[2026-03-05 13:48:05] 2026-03-05 12:47:05,736 | INFO     | all job control threads have been joined
[2026-03-05 13:48:05] 2026-03-05 12:47:05,739 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 13:48:05] 2026-03-05 12:47:05,816 | INFO     | [payload] control thread has finished
[2026-03-05 13:48:05] 2026-03-05 12:47:05,941 | INFO     | [payload] validate_post thread has finished
[2026-03-05 13:48:05] 2026-03-05 12:47:06,049 | INFO     | [payload] failed_post thread has finished
[2026-03-05 13:48:05] 2026-03-05 12:47:06,340 | INFO     | [data] copytool_out thread has finished
[2026-03-05 13:48:05] 2026-03-05 12:47:06,731 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 13:48:05] 2026-03-05 12:47:06,740 | INFO     | [job] validate thread has finished
[2026-03-05 13:48:05] 2026-03-05 12:47:06,741 | INFO     | [job] control thread has finished
[2026-03-05 13:48:05] 2026-03-05 12:47:07,411 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 13:48:05] 2026-03-05 12:47:11,417 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 13:48:05] 2026-03-05 12:47:59,273 | INFO     | [monitor] cgroup control has ended
[2026-03-05 13:48:05] 2026-03-05 12:48:00,262 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140446083102528)>', '<ExcThread(monitor, started 140445581547264)>']
[2026-03-05 13:48:05] 2026-03-05 12:48:00,607 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 13:48:05] 2026-03-05 12:48:00,607 | INFO     | [monitor] control thread has ended
[2026-03-05 13:48:05] 2026-03-05 12:48:05,288 | INFO     | all workflow threads have been joined
[2026-03-05 13:48:05] 2026-03-05 12:48:05,288 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 13:48:05] 2026-03-05 12:48:05,288 | INFO     | traces error code: 0
[2026-03-05 13:48:05] 2026-03-05 12:48:05,288 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 13:48:05] 2026-03-05 12:48:05,335 [wrapper] ==== pilot stdout END ====
[2026-03-05 13:48:05] 2026-03-05 12:48:05,338 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 13:48:05] 2026-03-05 12:48:05,340 [wrapper] pilotpid: 990360
[2026-03-05 13:48:05] 2026-03-05 12:48:05,342 [wrapper] Pilot exit status: 0
[2026-03-05 13:48:05] 2026-03-05 12:48:05,350 [wrapper] pandaids: 7040464783 7040464783
[2026-03-05 13:48:05] 2026-03-05 12:48:05,369 [wrapper] cleanup supervisor_pilot  998797 990361
[2026-03-05 13:48:05] 2026-03-05 12:48:05,371 [wrapper] Test setup, not cleaning
[2026-03-05 13:48:05] 2026-03-05 12:48:05,374 [wrapper] apfmon messages muted
[2026-03-05 13:48:05] 2026-03-05 12:48:05,376 [wrapper] ==== wrapper stdout END ====
[2026-03-05 13:48:05] 2026-03-05 12:48:05,378 [wrapper] ==== wrapper stderr END ====
[2026-03-05 13:48:05]  *** Error codes and diagnostics ***
[2026-03-05 13:48:05]     "exeErrorCode": 0,
[2026-03-05 13:48:05]     "exeErrorDiag": "",
[2026-03-05 13:48:05]     "pilotErrorCode": 0,
[2026-03-05 13:48:05]     "pilotErrorDiag": "",
[2026-03-05 13:48:05]  *** Listing of results directory ***
[2026-03-05 13:48:05] total 738184
[2026-03-05 13:48:05] drwx------ 5 boinc boinc      4096 Feb  2 16:00 pilot3
[2026-03-05 13:48:05] -rw-r--r-- 1 boinc boinc    584627 Mar  4 19:40 pilot3.tar.gz
[2026-03-05 13:48:05] -rwx------ 1 boinc boinc     36322 Mar  4 20:38 runpilot2-wrapper.sh
[2026-03-05 13:48:05] -rw-r--r-- 1 boinc boinc      5111 Mar  4 20:39 queuedata.json
[2026-03-05 13:48:05] -rw-r--r-- 1 boinc boinc       100 Mar  5 11:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 13:48:05] -rwxr-xr-x 1 boinc boinc      7986 Mar  5 11:29 run_atlas
[2026-03-05 13:48:05] -rw-r--r-- 1 boinc boinc       105 Mar  5 11:29 job.xml
[2026-03-05 13:48:05] -rw-r--r-- 3 boinc boinc 273524676 Mar  5 11:29 EVNT.48958625._000032.pool.root.1
[2026-03-05 13:48:05] -rw-r--r-- 3 boinc boinc 273524676 Mar  5 11:29 ATLAS.root_0
[2026-03-05 13:48:05] -rw-r--r-- 2 boinc boinc    597939 Mar  5 11:29 input.tar.gz
[2026-03-05 13:48:05] -rw-r--r-- 2 boinc boinc     15845 Mar  5 11:29 start_atlas.sh
[2026-03-05 13:48:05] drwxrwx--x 2 boinc boinc      4096 Mar  5 11:29 shared
[2026-03-05 13:48:05] -rw-r--r-- 1 boinc boinc         0 Mar  5 11:29 boinc_setup_complete
[2026-03-05 13:48:05] -rw-r--r-- 1 boinc boinc         0 Mar  5 11:29 boinc_lockfile
[2026-03-05 13:48:05] -rw------- 1 boinc boinc   1521291 Mar  5 11:29 agis_ddmendpoints.agis.ALL.json
[2026-03-05 13:48:05] -rw-r--r-- 1 boinc boinc      6451 Mar  5 12:06 init_data.xml
[2026-03-05 13:48:05] -rw-r--r-- 1 boinc boinc      2518 Mar  5 12:06 pandaJob.out
[2026-03-05 13:48:05] -rw------- 1 boinc boinc    998505 Mar  5 12:06 agis_schedconf.cvmfs.json
[2026-03-05 13:48:05] -rw------- 1 boinc boinc       426 Mar  5 12:06 workernode_map.json
[2026-03-05 13:48:05] -rw------- 1 boinc boinc        97 Mar  5 13:46 pilot_heartbeat.json
[2026-03-05 13:48:05] -rw------- 1 boinc boinc 202639813 Mar  5 13:46 HITS.48958627._000786.pool.root.1
[2026-03-05 13:48:05] -rw-r--r-- 1 boinc boinc       530 Mar  5 13:46 boinc_task_state.xml
[2026-03-05 13:48:05] -rw------- 1 boinc boinc      1020 Mar  5 13:46 memory_monitor_summary.json
[2026-03-05 13:48:05] -rw------- 1 boinc boinc    267684 Mar  5 13:47 log.48958627._000786.job.log.tgz.1
[2026-03-05 13:48:05] -rw------- 1 boinc boinc      6300 Mar  5 13:47 heartbeat.json
[2026-03-05 13:48:05] -rw-r--r-- 1 boinc boinc      8192 Mar  5 13:47 boinc_mmap_file
[2026-03-05 13:48:05] -rw-r--r-- 1 boinc boinc        27 Mar  5 13:47 wrapper_checkpoint.txt
[2026-03-05 13:48:05] -rw------- 1 boinc boinc      4552 Mar  5 13:48 pilotlog.txt
[2026-03-05 13:48:05] -rw------- 1 boinc boinc    868836 Mar  5 13:48 log.48958627._000786.job.log.1
[2026-03-05 13:48:05] -rw------- 1 boinc boinc       357 Mar  5 13:48 output.list
[2026-03-05 13:48:05] -rw-r--r-- 1 boinc boinc       620 Mar  5 13:48 runtime_log
[2026-03-05 13:48:05] -rw------- 1 boinc boinc   1157120 Mar  5 13:48 result.tar.gz
[2026-03-05 13:48:05] -rw------- 1 boinc boinc       785 Mar  5 13:48 vtQMDmEE7H9n9Rq4apOajLDm4fhM0noT9bVooX4SDmaZJLDmYTClEo.diag
[2026-03-05 13:48:05] -rw-r--r-- 1 boinc boinc      8996 Mar  5 13:48 runtime_log.err
[2026-03-05 13:48:05] -rw-r--r-- 1 boinc boinc     11566 Mar  5 13:48 stderr.txt
[2026-03-05 13:48:05] HITS file was successfully produced:
[2026-03-05 13:48:05] -rw------- 1 boinc boinc 202639813 Mar  5 13:46 shared/HITS.pool.root.1
[2026-03-05 13:48:05]  *** Contents of shared directory: ***
[2026-03-05 13:48:05] total 466748
[2026-03-05 13:48:05] -rw-r--r-- 3 boinc boinc 273524676 Mar  5 11:29 ATLAS.root_0
[2026-03-05 13:48:05] -rw-r--r-- 2 boinc boinc    597939 Mar  5 11:29 input.tar.gz
[2026-03-05 13:48:05] -rw-r--r-- 2 boinc boinc     15845 Mar  5 11:29 start_atlas.sh
[2026-03-05 13:48:05] -rw------- 1 boinc boinc 202639813 Mar  5 13:46 HITS.pool.root.1
[2026-03-05 13:48:05] -rw------- 1 boinc boinc   1157120 Mar  5 13:48 result.tar.gz
13:48:06 (986167): run_atlas exited; CPU time 17246.177814
13:48:06 (986167): called boinc_finish(0)

</stderr_txt>
]]>

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