Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:35:50 (558910): wrapper (7.7.26015): starting
05:35:50 (558910): wrapper: running run_atlas (--nthreads 3)
[2026-03-05 05:35:50] Arguments: --nthreads 3
[2026-03-05 05:35:50] Threads: 3
[2026-03-05 05:35:50] Checking for CVMFS
[2026-03-05 05:35:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-05 05:35:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-05 05:35:51] Running cvmfs_config stat atlas.cern.ch
[2026-03-05 05:35:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-05 05:35:51] 2.9.2.0 12686 3950 78960 156903 1 50 28814686 36864001 0 130560 0 1525029 99.983 134465 15852 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-05 05:35:51] CVMFS is ok
[2026-03-05 05:35:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-05 05:35:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-05 05:35:51] Further information can be found at the LHC@home message board.
[2026-03-05 05:35:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 05:35:51] Checking for apptainer binary...
[2026-03-05 05:35:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-05 05:35:51] Running /usr/bin/apptainer --version
[2026-03-05 05:35:51] apptainer version 1.4.1-1.1
[2026-03-05 05:35:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 05:35:51] thA337a
[2026-03-05 05:35:51] apptainer works
[2026-03-05 05:35:51] Set ATHENA_PROC_NUMBER=3
[2026-03-05 05:35:51] Set ATHENA_CORE_NUMBER=3
[2026-03-05 05:35:51] Starting ATLAS job with PandaID=7038515454
[2026-03-05 05:35:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 06:49:17]  *** The last 200 lines of the pilot log: ***
[2026-03-05 06:49:17] 2026-03-05 05:48:59,009 | INFO     | will attempt to kill all subprocesses of pid=567367
[2026-03-05 06:49:17] 2026-03-05 05:48:59,049 | INFO     | process IDs to be killed: [567367] (in reverse order)
[2026-03-05 06:49:17] 2026-03-05 05:48:59,074 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 06:49:17] 2026-03-05 05:48:59,075 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 06:49:17] 2026-03-05 05:48:59,076 | INFO     | did not find any defunct processes belonging to 567367
[2026-03-05 06:49:17] 2026-03-05 05:48:59,077 | INFO     | did not find any defunct processes belonging to 567367
[2026-03-05 06:49:17] 2026-03-05 05:48:59,077 | INFO     | ready for new job
[2026-03-05 06:49:17] 2026-03-05 05:48:59,077 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 06:49:17] 2026-03-05 05:48:59,078 | INFO     | **************************************
[2026-03-05 06:49:17] 2026-03-05 05:48:59,078 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 06:49:17] 2026-03-05 05:48:59,078 | INFO     | **************************************
[2026-03-05 06:49:17] 2026-03-05 05:48:59,078 | INFO     | 
[2026-03-05 06:49:17] 2026-03-05 05:48:59,078 | INFO     | architecture information:
[2026-03-05 06:49:17] 2026-03-05 05:48:59,079 | INFO     | executing command: cat /etc/os-release
[2026-03-05 06:49:17] 2026-03-05 05:48:59,088 | INFO     | cat /etc/os-release:
[2026-03-05 06:49:17] NAME="CentOS Linux"
[2026-03-05 06:49:17] VERSION="7 (Core)"
[2026-03-05 06:49:17] ID="centos"
[2026-03-05 06:49:17] ID_LIKE="rhel fedora"
[2026-03-05 06:49:17] VERSION_ID="7"
[2026-03-05 06:49:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 06:49:17] ANSI_COLOR="0;31"
[2026-03-05 06:49:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 06:49:17] HOME_URL="https://www.centos.org/"
[2026-03-05 06:49:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 06:49:17] 
[2026-03-05 06:49:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 06:49:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 06:49:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 06:49:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 06:49:17] 
[2026-03-05 06:49:17] 2026-03-05 05:48:59,088 | INFO     | **************************************
[2026-03-05 06:49:17] 2026-03-05 05:48:59,592 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-05 06:49:17] 2026-03-05 05:48:59,606 | INFO     | sufficient remaining disk space (374737993728 B)
[2026-03-05 06:49:17] 2026-03-05 05:48:59,606 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 06:49:17] 2026-03-05 05:48:59,606 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 06:49:17] 2026-03-05 05:48:59,606 | INFO     | update_server=False
[2026-03-05 06:49:17] 2026-03-05 05:48:59,606 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 06:49:17] 2026-03-05 05:48:59,606 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 06:49:17] 2026-03-05 05:48:59,606 | INFO     | aborting loop
[2026-03-05 06:49:17] 2026-03-05 05:48:59,607 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 06:49:17] 2026-03-05 05:48:59,607 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-05 06:49:17] 2026-03-05 05:48:59,607 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 06:49:17] 2026-03-05 05:48:59,607 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 06:49:17] 2026-03-05 05:48:59,607 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 06:49:17] 2026-03-05 05:48:59,607 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 06:49:17] 2026-03-05 05:48:59,756 | INFO     | all data control threads have been joined
[2026-03-05 06:49:17] 2026-03-05 05:48:59,949 | INFO     | all job control threads have been joined
[2026-03-05 06:49:17] 2026-03-05 05:49:00,612 | INFO     | [job] retrieve thread has finished
[2026-03-05 06:49:17] 2026-03-05 05:49:00,612 | INFO     | [job] job monitor thread has finished
[2026-03-05 06:49:17] 2026-03-05 05:49:00,612 | INFO     | [job] queue monitor thread has finished
[2026-03-05 06:49:17] 2026-03-05 05:49:00,653 | INFO     | all payload control threads have been joined
[2026-03-05 06:49:17] 2026-03-05 05:49:00,761 | INFO     | [data] control thread has finished
[2026-03-05 06:49:17] 2026-03-05 05:49:00,768 | INFO     | [payload] failed_post thread has finished
[2026-03-05 06:49:17] 2026-03-05 05:49:00,952 | INFO     | [job] control thread has finished
[2026-03-05 06:49:17] 2026-03-05 05:49:01,321 | INFO     | [payload] validate_post thread has finished
[2026-03-05 06:49:17] 2026-03-05 05:49:01,613 | INFO     | [data] copytool_out thread has finished
[2026-03-05 06:49:17] 2026-03-05 05:49:01,659 | INFO     | [payload] control thread has finished
[2026-03-05 06:49:17] 2026-03-05 05:49:01,795 | INFO     | [job] validate thread has finished
[2026-03-05 06:49:17] 2026-03-05 05:49:01,805 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 06:49:17] 2026-03-05 05:49:01,934 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 06:49:17] 2026-03-05 05:49:01,947 | INFO     | [data] copytool_in thread has finished
[2026-03-05 06:49:17] 2026-03-05 05:49:02,044 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 06:49:17] 2026-03-05 05:49:02,491 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 06:49:17] 2026-03-05 05:49:06,498 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 06:49:17] 2026-03-05 05:49:07,380 | INFO     | [monitor] cgroup control has ended
[2026-03-05 06:49:17] 2026-03-05 05:49:10,282 | INFO     | job.realtimelogging is not enabled
[2026-03-05 06:49:17] 2026-03-05 05:49:11,287 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 06:49:17] 2026-03-05 05:49:12,033 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139659275093824)>', '<ExcThread(monitor, started 139658604291840)>']
[2026-03-05 06:49:17] 2026-03-05 05:49:12,677 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 06:49:17] 2026-03-05 05:49:12,677 | INFO     | [monitor] control thread has ended
[2026-03-05 06:49:17] 2026-03-05 05:49:17,058 | INFO     | all workflow threads have been joined
[2026-03-05 06:49:17] 2026-03-05 05:49:17,058 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 06:49:17] 2026-03-05 05:49:17,059 | INFO     | traces error code: 0
[2026-03-05 06:49:17] 2026-03-05 05:49:17,059 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 06:49:17] 2026-03-05 05:49:17,107 [wrapper] ==== pilot stdout END ====
[2026-03-05 06:49:17] 2026-03-05 05:49:17,109 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 06:49:17] 2026-03-05 05:49:17,112 [wrapper] pilotpid: 562948
[2026-03-05 06:49:17] 2026-03-05 05:49:17,115 [wrapper] Pilot exit status: 0
[2026-03-05 06:49:17] 2026-03-05 05:49:17,123 [wrapper] pandaids: 7038515454
[2026-03-05 06:49:17] 2026-03-05 05:49:17,139 [wrapper] cleanup supervisor_pilot  572408 562949
[2026-03-05 06:49:17] 2026-03-05 05:49:17,142 [wrapper] Test setup, not cleaning
[2026-03-05 06:49:17] 2026-03-05 05:49:17,144 [wrapper] apfmon messages muted
[2026-03-05 06:49:17] 2026-03-05 05:49:17,147 [wrapper] ==== wrapper stdout END ====
[2026-03-05 06:49:17] 2026-03-05 05:49:17,149 [wrapper] ==== wrapper stderr END ====
[2026-03-05 06:49:17]  *** Error codes and diagnostics ***
[2026-03-05 06:49:17]     "exeErrorCode": 0,
[2026-03-05 06:49:17]     "exeErrorDiag": "",
[2026-03-05 06:49:17]     "pilotErrorCode": 0,
[2026-03-05 06:49:17]     "pilotErrorDiag": "",
[2026-03-05 06:49:17]  *** Listing of results directory ***
[2026-03-05 06:49:17] total 605316
[2026-03-05 06:49:17] -rw-r--r-- 1 boinc boinc    584627 Mar  4 17:22 pilot3.tar.gz
[2026-03-05 06:49:17] -rw-r--r-- 1 boinc boinc      5111 Mar  4 17:23 queuedata.json
[2026-03-05 06:49:17] -rwx------ 1 boinc boinc     36322 Mar  4 17:23 runpilot2-wrapper.sh
[2026-03-05 06:49:17] -rw-r--r-- 1 boinc boinc       100 Mar  5 05:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 06:49:17] -rwxr-xr-x 1 boinc boinc      7986 Mar  5 05:35 run_atlas
[2026-03-05 06:49:17] -rw-r--r-- 1 boinc boinc       105 Mar  5 05:35 job.xml
[2026-03-05 06:49:17] -rw-r--r-- 2 boinc boinc 435683028 Mar  5 05:35 EVNT.46701403._001041.pool.root.1
[2026-03-05 06:49:17] -rw-r--r-- 2 boinc boinc    597941 Mar  5 05:35 input.tar.gz
[2026-03-05 06:49:17] -rw-r--r-- 2 boinc boinc     15845 Mar  5 05:35 start_atlas.sh
[2026-03-05 06:49:17] drwxrwx--x 2 boinc boinc      4096 Mar  5 05:35 shared
[2026-03-05 06:49:17] -rw-r--r-- 1 boinc boinc         0 Mar  5 05:35 boinc_setup_complete
[2026-03-05 06:49:17] -rw-r--r-- 1 boinc boinc      6448 Mar  5 05:35 init_data.xml
[2026-03-05 06:49:17] -rw-r--r-- 1 boinc boinc         0 Mar  5 05:35 boinc_lockfile
[2026-03-05 06:49:17] -rw-r--r-- 1 boinc boinc      2559 Mar  5 05:35 pandaJob.out
[2026-03-05 06:49:17] -rw------- 1 boinc boinc    997749 Mar  5 05:35 agis_schedconf.cvmfs.json
[2026-03-05 06:49:17] -rw------- 1 boinc boinc   1521291 Mar  5 05:35 agis_ddmendpoints.agis.ALL.json
[2026-03-05 06:49:17] -rw------- 1 boinc boinc       423 Mar  5 05:36 workernode_map.json
[2026-03-05 06:49:17] drwx------ 5 boinc boinc      4096 Mar  5 05:36 pilot3
[2026-03-05 06:49:17] -rw------- 1 boinc boinc        95 Mar  5 06:48 pilot_heartbeat.json
[2026-03-05 06:49:17] -rw-r--r-- 1 boinc boinc       530 Mar  5 06:48 boinc_task_state.xml
[2026-03-05 06:49:17] -rw------- 1 boinc boinc 178472009 Mar  5 06:48 HITS.48955010._002005.pool.root.1
[2026-03-05 06:49:17] -rw------- 1 boinc boinc      1017 Mar  5 06:48 memory_monitor_summary.json
[2026-03-05 06:49:17] -rw------- 1 boinc boinc    234977 Mar  5 06:48 log.48955010._002005.job.log.tgz.1
[2026-03-05 06:49:17] -rw------- 1 boinc boinc      6303 Mar  5 06:48 heartbeat.json
[2026-03-05 06:49:17] -rw-r--r-- 1 boinc boinc      8192 Mar  5 06:49 boinc_mmap_file
[2026-03-05 06:49:17] -rw-r--r-- 1 boinc boinc        27 Mar  5 06:49 wrapper_checkpoint.txt
[2026-03-05 06:49:17] -rw------- 1 boinc boinc      4624 Mar  5 06:49 pilotlog.txt
[2026-03-05 06:49:17] -rw------- 1 boinc boinc    647383 Mar  5 06:49 log.48955010._002005.job.log.1
[2026-03-05 06:49:17] -rw------- 1 boinc boinc       357 Mar  5 06:49 output.list
[2026-03-05 06:49:17] -rw-r--r-- 1 boinc boinc       620 Mar  5 06:49 runtime_log
[2026-03-05 06:49:17] -rw------- 1 boinc boinc    901120 Mar  5 06:49 result.tar.gz
[2026-03-05 06:49:17] -rw-r--r-- 1 boinc boinc      8901 Mar  5 06:49 runtime_log.err
[2026-03-05 06:49:17] -rw------- 1 boinc boinc       658 Mar  5 06:49 6aLMDm6B4H9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmCsKLDmB0tTNm.diag
[2026-03-05 06:49:17] -rw-r--r-- 1 boinc boinc     10200 Mar  5 06:49 stderr.txt
[2026-03-05 06:49:17] HITS file was successfully produced:
[2026-03-05 06:49:17] -rw------- 1 boinc boinc 178472009 Mar  5 06:48 shared/HITS.pool.root.1
[2026-03-05 06:49:17]  *** Contents of shared directory: ***
[2026-03-05 06:49:17] total 601248
[2026-03-05 06:49:17] -rw-r--r-- 2 boinc boinc 435683028 Mar  5 05:35 ATLAS.root_0
[2026-03-05 06:49:17] -rw-r--r-- 2 boinc boinc    597941 Mar  5 05:35 input.tar.gz
[2026-03-05 06:49:17] -rw-r--r-- 2 boinc boinc     15845 Mar  5 05:35 start_atlas.sh
[2026-03-05 06:49:17] -rw------- 1 boinc boinc 178472009 Mar  5 06:48 HITS.pool.root.1
[2026-03-05 06:49:17] -rw------- 1 boinc boinc    901120 Mar  5 06:49 result.tar.gz
06:49:19 (558910): run_atlas exited; CPU time 12439.387481
06:49:19 (558910): called boinc_finish(0)

</stderr_txt>
]]>

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