Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:34:36 (731910): wrapper (7.7.26015): starting
05:34:36 (731910): wrapper: running run_atlas (--nthreads 4)
[2026-03-07 05:34:36] Arguments: --nthreads 4
[2026-03-07 05:34:36] Threads: 4
[2026-03-07 05:34:36] Checking for CVMFS
[2026-03-07 05:34:36] No cvmfs_config command found, will try listing directly
[2026-03-07 05:34:36] CVMFS is ok
[2026-03-07 05:34:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 05:34:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-07 05:34:36] Further information can be found at the LHC@home message board.
[2026-03-07 05:34:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 05:34:36] Checking for apptainer binary...
[2026-03-07 05:34:36] which: no apptainer in ((null))
[2026-03-07 05:34:36] apptainer is not installed, using version from CVMFS
[2026-03-07 05:34:36] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 05:34:37] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot12/slots/2/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2026-03-07 05:34:37] apptainer works
[2026-03-07 05:34:37] Set ATHENA_PROC_NUMBER=4
[2026-03-07 05:34:37] Set ATHENA_CORE_NUMBER=4
[2026-03-07 05:34:38] Starting ATLAS job with PandaID=7038515401
[2026-03-07 05:34:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot12/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 09:08:57]  *** The last 200 lines of the pilot log: ***
[2026-03-07 09:08:57] 2026-03-07 08:07:57,934 | INFO     | sum of deviations: 19529091867.0
[2026-03-07 09:08:57] 2026-03-07 08:07:57,935 | INFO     | mean x: 1772864543.0
[2026-03-07 09:08:57] 2026-03-07 08:07:57,935 | INFO     | mean y: 2324767.729468599
[2026-03-07 09:08:57] 2026-03-07 08:07:57,935 | INFO     | intersect: -12586299689.817858
[2026-03-07 09:08:57] 2026-03-07 08:07:57,935 | INFO     | chi2: 1.7122723354580063
[2026-03-07 09:08:57] 2026-03-07 08:07:57,935 | INFO     | sum of square deviations: 2555770710.5
[2026-03-07 09:08:57] 2026-03-07 08:07:57,937 | INFO     | sum of deviations: 18961658002.499996
[2026-03-07 09:08:57] 2026-03-07 08:07:57,937 | INFO     | mean x: 1772864390.5
[2026-03-07 09:08:57] 2026-03-07 08:07:57,937 | INFO     | mean y: 2324322.797029703
[2026-03-07 09:08:57] 2026-03-07 08:07:57,937 | INFO     | intersect: -13150830660.693264
[2026-03-07 09:08:57] 2026-03-07 08:07:57,937 | INFO     | chi2: 1.713479688126319
[2026-03-07 09:08:57] 2026-03-07 08:07:57,937 | INFO     | current chi2=1.713479688126319 (change=-0.07051171962021947 %)
[2026-03-07 09:08:57] 2026-03-07 08:07:57,937 | INFO     | right removable region: 201
[2026-03-07 09:08:57] 2026-03-07 08:07:57,938 | INFO     | sum of square deviations: 2555770710.5
[2026-03-07 09:08:57] 2026-03-07 08:07:57,939 | INFO     | sum of deviations: -10085450280.500002
[2026-03-07 09:08:57] 2026-03-07 08:07:57,939 | INFO     | mean x: 1772864695.5
[2026-03-07 09:08:57] 2026-03-07 08:07:57,940 | INFO     | mean y: 2347700.7574257427
[2026-03-07 09:08:57] 2026-03-07 08:07:57,940 | INFO     | intersect: 6998334730.055931
[2026-03-07 09:08:57] 2026-03-07 08:07:57,940 | INFO     | chi2: 0.14333038758787203
[2026-03-07 09:08:57] 2026-03-07 08:07:57,940 | INFO     | current chi2=0.14333038758787203 (change=91.62922949698108 %)
[2026-03-07 09:08:57] 2026-03-07 08:07:57,941 | INFO     | sum of square deviations: 2370641658.0
[2026-03-07 09:08:57] 2026-03-07 08:07:57,942 | INFO     | sum of deviations: -1527149883.9999962
[2026-03-07 09:08:57] 2026-03-07 08:07:57,942 | INFO     | mean x: 1772864848.0
[2026-03-07 09:08:57] 2026-03-07 08:07:57,942 | INFO     | mean y: 2340625.5837563453
[2026-03-07 09:08:57] 2026-03-07 08:07:57,942 | INFO     | intersect: 1144407094.3114696
[2026-03-07 09:08:57] 2026-03-07 08:07:57,942 | INFO     | chi2: 0.0761169675782028
[2026-03-07 09:08:57] 2026-03-07 08:07:57,943 | INFO     | current chi2=0.0761169675782028 (change=46.89404748065896 %)
[2026-03-07 09:08:57] 2026-03-07 08:07:57,943 | INFO     | sum of square deviations: 2194675568.0
[2026-03-07 09:08:57] 2026-03-07 08:07:57,944 | INFO     | sum of deviations: 4682735577.000002
[2026-03-07 09:08:57] 2026-03-07 08:07:57,944 | INFO     | mean x: 1772865000.5
[2026-03-07 09:08:57] 2026-03-07 08:07:57,944 | INFO     | mean y: 2335305.2916666665
[2026-03-07 09:08:57] 2026-03-07 08:07:57,944 | INFO     | intersect: -3780391459.4779115
[2026-03-07 09:08:57] 2026-03-07 08:07:57,945 | INFO     | chi2: 0.0007564708916946792
[2026-03-07 09:08:57] 2026-03-07 08:07:57,945 | INFO     | current chi2=0.0007564708916946792 (change=99.00617310993441 %)
[2026-03-07 09:08:57] 2026-03-07 08:07:57,945 | INFO     | sum of square deviations: 2027639878.0
[2026-03-07 09:08:57] 2026-03-07 08:07:57,947 | INFO     | sum of deviations: 4008981610.0000005
[2026-03-07 09:08:57] 2026-03-07 08:07:57,947 | INFO     | mean x: 1772865153.0
[2026-03-07 09:08:57] 2026-03-07 08:07:57,947 | INFO     | mean y: 2335920.272727273
[2026-03-07 09:08:57] 2026-03-07 08:07:57,947 | INFO     | intersect: -3502913642.286348
[2026-03-07 09:08:57] 2026-03-07 08:07:57,947 | INFO     | chi2: 0.0006355338340277317
[2026-03-07 09:08:57] 2026-03-07 08:07:57,947 | INFO     | current chi2=0.0006355338340277317 (change=15.98700743078415 %)
[2026-03-07 09:08:57] 2026-03-07 08:07:57,948 | INFO     | left removable region: 40
[2026-03-07 09:08:57] 2026-03-07 08:07:57,948 | INFO     | sum of square deviations: 1294014960.0
[2026-03-07 09:08:57] 2026-03-07 08:07:57,949 | INFO     | sum of deviations: 1933660838.0000002
[2026-03-07 09:08:57] 2026-03-07 08:07:57,949 | INFO     | mean x: 1772865580.0
[2026-03-07 09:08:57] 2026-03-07 08:07:57,949 | INFO     | mean y: 2337754.4409937887
[2026-03-07 09:08:57] 2026-03-07 08:07:57,949 | INFO     | intersect: -2646874850.554049
[2026-03-07 09:08:57] 2026-03-07 08:07:57,949 | INFO     | chi2: 0.000356720608806043
[2026-03-07 09:08:57] 2026-03-07 08:07:57,949 | INFO     | current memory leak: 1.49 B/s (using 161 data points, chi2=0.00)
[2026-03-07 09:08:57] 2026-03-07 08:07:57,950 | INFO     | could have reported an average CPU frequency of 2499 MHz (11 samples)
[2026-03-07 09:08:57] 2026-03-07 08:07:57,950 | INFO     | ..............................
[2026-03-07 09:08:57] 2026-03-07 08:07:57,950 | INFO     | . Timing measurements:
[2026-03-07 09:08:57] 2026-03-07 08:07:57,950 | INFO     | . get job = 0 s
[2026-03-07 09:08:57] 2026-03-07 08:07:57,950 | INFO     | . initial setup = 35 s
[2026-03-07 09:08:57] 2026-03-07 08:07:57,950 | INFO     | . payload setup = 43 s
[2026-03-07 09:08:57] 2026-03-07 08:07:57,950 | INFO     | . stage-in = 0 s
[2026-03-07 09:08:57] 2026-03-07 08:07:57,951 | INFO     | . payload execution = 12635 s
[2026-03-07 09:08:57] 2026-03-07 08:07:57,951 | INFO     | . stage-out = 1 s
[2026-03-07 09:08:57] 2026-03-07 08:07:57,951 | INFO     | . log creation = 0 s
[2026-03-07 09:08:57] 2026-03-07 08:07:57,951 | INFO     | ..............................
[2026-03-07 09:08:57] 2026-03-07 08:07:58,339 | INFO     | 
[2026-03-07 09:08:57] 2026-03-07 08:07:58,339 | INFO     | job summary report
[2026-03-07 09:08:57] 2026-03-07 08:07:58,339 | INFO     | --------------------------------------------------
[2026-03-07 09:08:57] 2026-03-07 08:07:58,339 | INFO     | PanDA job id: 7038515401
[2026-03-07 09:08:57] 2026-03-07 08:07:58,339 | INFO     | task id: 48955010
[2026-03-07 09:08:57] 2026-03-07 08:07:58,339 | INFO     | errors: (none)
[2026-03-07 09:08:57] 2026-03-07 08:07:58,340 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 09:08:57] 2026-03-07 08:07:58,340 | INFO     | pilot state: finished 
[2026-03-07 09:08:57] 2026-03-07 08:07:58,340 | INFO     | transexitcode: 0
[2026-03-07 09:08:57] 2026-03-07 08:07:58,340 | INFO     | exeerrorcode: 0
[2026-03-07 09:08:57] 2026-03-07 08:07:58,340 | INFO     | exeerrordiag: 
[2026-03-07 09:08:57] 2026-03-07 08:07:58,340 | INFO     | exitcode: 0
[2026-03-07 09:08:57] 2026-03-07 08:07:58,340 | INFO     | exitmsg: OK
[2026-03-07 09:08:57] 2026-03-07 08:07:58,340 | INFO     | cpuconsumptiontime: 41995 s
[2026-03-07 09:08:57] 2026-03-07 08:07:58,340 | INFO     | nevents: 400
[2026-03-07 09:08:57] 2026-03-07 08:07:58,340 | INFO     | neventsw: 0
[2026-03-07 09:08:57] 2026-03-07 08:07:58,340 | INFO     | pid: 741617
[2026-03-07 09:08:57] 2026-03-07 08:07:58,340 | INFO     | pgrp: 741617
[2026-03-07 09:08:57] 2026-03-07 08:07:58,340 | INFO     | corecount: 4
[2026-03-07 09:08:57] 2026-03-07 08:07:58,341 | INFO     | event service: False
[2026-03-07 09:08:57] 2026-03-07 08:07:58,341 | INFO     | sizes: {0: 2295322, 1: 2295783, 12683: 2326008, 12684: 2335028, 12685: 2335084, 12687: 2335278}
[2026-03-07 09:08:57] 2026-03-07 08:07:58,341 | INFO     | --------------------------------------------------
[2026-03-07 09:08:57] 2026-03-07 08:07:58,341 | INFO     | 
[2026-03-07 09:08:57] 2026-03-07 08:07:58,341 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot12/slots/2
[2026-03-07 09:08:57] 2026-03-07 08:07:58,549 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 09:08:57] 2026-03-07 08:07:58,550 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 09:08:57] 2026-03-07 08:07:58,550 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 09:08:57] 2026-03-07 08:07:58,550 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 09:08:57] 2026-03-07 08:07:58,550 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 09:08:57] 2026-03-07 08:07:58,550 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 09:08:57] 2026-03-07 08:07:58,550 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 09:08:57] 2026-03-07 08:07:58,550 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 09:08:57] 2026-03-07 08:07:58,550 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 09:08:57] 2026-03-07 08:07:58,550 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 09:08:57] 2026-03-07 08:07:58,550 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 09:08:57] 2026-03-07 08:07:58,550 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 09:08:57] 2026-03-07 08:07:58,551 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 09:08:57] 2026-03-07 08:07:58,551 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 09:08:57] 2026-03-07 08:07:58,551 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 09:08:57] 2026-03-07 08:07:58,554 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 09:08:57] 2026-03-07 08:07:58,554 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 09:08:57] 2026-03-07 08:07:58,554 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 09:08:57] 2026-03-07 08:07:58,554 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 09:08:57] 2026-03-07 08:07:58,554 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 09:08:57] 2026-03-07 08:07:58,555 | INFO     | job 7038515401 has completed (purged errors)
[2026-03-07 09:08:57] 2026-03-07 08:07:58,555 | INFO     | overall cleanup function is called
[2026-03-07 09:08:57] 2026-03-07 08:07:58,670 | WARNING  | process 741617 can no longer be monitored (due to stat problems) - aborting
[2026-03-07 09:08:57] 2026-03-07 08:07:58,976 | INFO     | using path: /var/lib/boinc/var/slot12/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 09:08:57] 2026-03-07 08:07:59,344 | INFO     | number of running child processes to parent process 741617: 1
[2026-03-07 09:08:57] 2026-03-07 08:07:59,344 | INFO     | maximum number of monitored processes: 6
[2026-03-07 09:08:57] 2026-03-07 08:07:59,344 | INFO     | aborting job monitoring since job object (job id=7038515401) has expired
[2026-03-07 09:08:57] 2026-03-07 08:07:59,563 | INFO     | --- collectZombieJob: --- 10, [741617]
[2026-03-07 09:08:57] 2026-03-07 08:07:59,563 | INFO     | zombie collector waiting for pid 741617
[2026-03-07 09:08:57] 2026-03-07 08:07:59,563 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 09:08:57] 2026-03-07 08:07:59,563 | INFO     | collected zombie processes
[2026-03-07 09:08:57] 2026-03-07 08:07:59,563 | INFO     | will attempt to kill all subprocesses of pid=741617
[2026-03-07 09:08:57] 2026-03-07 08:07:59,961 | INFO     | process IDs to be killed: [741617] (in reverse order)
[2026-03-07 09:08:57] 2026-03-07 08:08:00,157 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 09:08:57] 2026-03-07 08:08:00,157 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 09:08:57] 2026-03-07 08:08:00,230 | INFO     | did not find any defunct processes belonging to 741617
[2026-03-07 09:08:57] 2026-03-07 08:08:00,284 | INFO     | did not find any defunct processes belonging to 741617
[2026-03-07 09:08:57] 2026-03-07 08:08:00,284 | INFO     | ready for new job
[2026-03-07 09:08:57] 2026-03-07 08:08:00,284 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 09:08:57] 2026-03-07 08:08:00,286 | INFO     | **************************************
[2026-03-07 09:08:57] 2026-03-07 08:08:00,286 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 09:08:57] 2026-03-07 08:08:00,286 | INFO     | **************************************
[2026-03-07 09:08:57] 2026-03-07 08:08:00,286 | INFO     | 
[2026-03-07 09:08:57] 2026-03-07 08:08:00,290 | INFO     | architecture information:
[2026-03-07 09:08:57] 2026-03-07 08:08:00,293 | INFO     | executing command: cat /etc/os-release
[2026-03-07 09:08:57] 2026-03-07 08:08:00,318 | INFO     | cat /etc/os-release:
[2026-03-07 09:08:57] NAME="CentOS Linux"
[2026-03-07 09:08:57] VERSION="7 (Core)"
[2026-03-07 09:08:57] ID="centos"
[2026-03-07 09:08:57] ID_LIKE="rhel fedora"
[2026-03-07 09:08:57] VERSION_ID="7"
[2026-03-07 09:08:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 09:08:57] ANSI_COLOR="0;31"
[2026-03-07 09:08:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 09:08:57] HOME_URL="https://www.centos.org/"
[2026-03-07 09:08:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 09:08:57] 
[2026-03-07 09:08:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 09:08:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 09:08:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 09:08:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 09:08:57] 
[2026-03-07 09:08:57] 2026-03-07 08:08:00,318 | INFO     | **************************************
[2026-03-07 09:08:57] 2026-03-07 08:08:00,821 | INFO     | executing command: df -mP /var/lib/boinc/var/slot12/slots/2
[2026-03-07 09:08:57] 2026-03-07 08:08:00,836 | INFO     | sufficient remaining disk space (20628635648 B)
[2026-03-07 09:08:57] 2026-03-07 08:08:00,836 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 09:08:57] 2026-03-07 08:08:00,837 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 09:08:57] 2026-03-07 08:08:00,837 | INFO     | update_server=False
[2026-03-07 09:08:57] 2026-03-07 08:08:00,837 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 09:08:57] 2026-03-07 08:08:00,837 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 09:08:57] 2026-03-07 08:08:00,837 | INFO     | aborting loop
[2026-03-07 09:08:57] 2026-03-07 08:08:00,837 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 09:08:57] 2026-03-07 08:08:01,380 | INFO     | all data control threads have been joined
[2026-03-07 09:08:57] 2026-03-07 08:08:01,665 | INFO     | all job control threads have been joined
[2026-03-07 09:08:57] 2026-03-07 08:08:01,842 | INFO     | [job] retrieve thread has finished
[2026-03-07 09:08:57] 2026-03-07 08:08:01,845 | INFO     | [job] job monitor thread has finished
[2026-03-07 09:08:57] 2026-03-07 08:08:01,863 | INFO     | [job] validate thread has finished
[2026-03-07 09:08:57] 2026-03-07 08:08:01,879 | INFO     | all payload control threads have been joined
[2026-03-07 09:08:57] 2026-03-07 08:08:01,892 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 09:08:57] 2026-03-07 08:08:02,063 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 09:08:57] 2026-03-07 08:08:02,091 | INFO     | [data] copytool_in thread has finished
[2026-03-07 09:08:57] 2026-03-07 08:08:02,218 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 09:08:57] 2026-03-07 08:08:02,385 | INFO     | [payload] failed_post thread has finished
[2026-03-07 09:08:57] 2026-03-07 08:08:02,386 | INFO     | [data] control thread has finished
[2026-03-07 09:08:57] 2026-03-07 08:08:02,445 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 09:08:57] 2026-03-07 08:08:02,671 | INFO     | [job] control thread has finished
[2026-03-07 09:08:57] 2026-03-07 08:08:02,847 | INFO     | [data] copytool_out thread has finished
[2026-03-07 09:08:57] 2026-03-07 08:08:02,884 | INFO     | [payload] control thread has finished
[2026-03-07 09:08:57] 2026-03-07 08:08:02,902 | INFO     | [payload] validate_post thread has finished
[2026-03-07 09:08:57] 2026-03-07 08:08:03,115 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 09:08:57] 2026-03-07 08:08:03,215 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 09:08:57] 2026-03-07 08:08:04,120 | INFO     | [job] queue monitor thread has finished
[2026-03-07 09:08:57] 2026-03-07 08:08:06,076 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 09:08:57] 2026-03-07 08:08:30,201 | INFO     | PID=736490 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-07 09:08:57] 2026-03-07 08:08:30,201 | INFO     | .. there are 13 such processes running
[2026-03-07 09:08:57] 2026-03-07 08:08:30,202 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 09:08:57] 2026-03-07 08:08:30,202 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 09:08:57] 2026-03-07 08:08:30,203 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 09:08:57] 2026-03-07 08:08:50,578 | INFO     | [monitor] cgroup control has ended
[2026-03-07 09:08:57] 2026-03-07 08:08:51,997 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22575619839808)>', '<ExcThread(monitor, started 22575377028864)>']
[2026-03-07 09:08:57] 2026-03-07 08:08:52,322 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 09:08:57] 2026-03-07 08:08:52,322 | INFO     | [monitor] control thread has ended
[2026-03-07 09:08:57] 2026-03-07 08:08:57,023 | INFO     | all workflow threads have been joined
[2026-03-07 09:08:57] 2026-03-07 08:08:57,023 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 09:08:57] 2026-03-07 08:08:57,023 | INFO     | traces error code: 0
[2026-03-07 09:08:57] 2026-03-07 08:08:57,024 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 09:08:57] 2026-03-07 08:08:57,146 [wrapper] ==== pilot stdout END ====
[2026-03-07 09:08:57] 2026-03-07 08:08:57,149 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 09:08:57] 2026-03-07 08:08:57,151 [wrapper] pilotpid: 736490
[2026-03-07 09:08:57] 2026-03-07 08:08:57,153 [wrapper] Pilot exit status: 0
[2026-03-07 09:08:57] 2026-03-07 08:08:57,165 [wrapper] pandaids: 7038515401
[2026-03-07 09:08:57] 2026-03-07 08:08:57,239 [wrapper] cleanup supervisor_pilot  966974 736491
[2026-03-07 09:08:57] 2026-03-07 08:08:57,243 [wrapper] Test setup, not cleaning
[2026-03-07 09:08:57] 2026-03-07 08:08:57,246 [wrapper] apfmon messages muted
[2026-03-07 09:08:57] 2026-03-07 08:08:57,248 [wrapper] ==== wrapper stdout END ====
[2026-03-07 09:08:57] 2026-03-07 08:08:57,250 [wrapper] ==== wrapper stderr END ====
[2026-03-07 09:08:57]  *** Error codes and diagnostics ***
[2026-03-07 09:08:57]     "exeErrorCode": 0,
[2026-03-07 09:08:57]     "exeErrorDiag": "",
[2026-03-07 09:08:57]     "pilotErrorCode": 0,
[2026-03-07 09:08:57]     "pilotErrorDiag": "",
[2026-03-07 09:08:57]  *** Listing of results directory ***
[2026-03-07 09:08:57] total 619564
[2026-03-07 09:08:57] -rw-r--r--. 1 boinc boinc    584627 Mar  4 17:22 pilot3.tar.gz
[2026-03-07 09:08:57] -rw-r--r--. 1 boinc boinc      5111 Mar  4 17:23 queuedata.json
[2026-03-07 09:08:57] -rwx------. 1 boinc boinc     36322 Mar  4 17:23 runpilot2-wrapper.sh
[2026-03-07 09:08:57] -rw-r--r--. 1 boinc boinc       100 Mar  7 05:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 09:08:57] -rwxr-xr-x. 1 boinc boinc      7986 Mar  7 05:34 run_atlas
[2026-03-07 09:08:57] -rw-r--r--. 1 boinc boinc       105 Mar  7 05:34 job.xml
[2026-03-07 09:08:57] -rw-r--r--. 1 boinc boinc      6559 Mar  7 05:34 init_data.xml
[2026-03-07 09:08:57] -rw-r--r--. 2 boinc boinc 437740517 Mar  7 05:34 EVNT.46701403._001040.pool.root.1
[2026-03-07 09:08:57] -rw-r--r--. 2 boinc boinc     15845 Mar  7 05:34 start_atlas.sh
[2026-03-07 09:08:57] drwxrwx--x. 2 boinc boinc      4096 Mar  7 05:34 shared
[2026-03-07 09:08:57] -rw-r--r--. 2 boinc boinc    597941 Mar  7 05:34 input.tar.gz
[2026-03-07 09:08:57] -rw-r--r--. 1 boinc boinc         0 Mar  7 05:34 boinc_lockfile
[2026-03-07 09:08:57] -rw-r--r--. 1 boinc boinc      2558 Mar  7 05:34 pandaJob.out
[2026-03-07 09:08:57] -rw-------. 1 boinc boinc    999155 Mar  7 05:35 agis_schedconf.cvmfs.json
[2026-03-07 09:08:57] -rw-------. 1 boinc boinc       452 Mar  7 05:36 workernode_map.json
[2026-03-07 09:08:57] drwx------. 5 boinc boinc      4096 Mar  7 05:36 pilot3
[2026-03-07 09:08:57] -rw-------. 1 boinc boinc 188450769 Mar  7 09:07 HITS.48955010._001952.pool.root.1
[2026-03-07 09:08:57] -rw-r--r--. 1 boinc boinc       532 Mar  7 09:07 boinc_task_state.xml
[2026-03-07 09:08:57] -rw-------. 1 boinc boinc      1034 Mar  7 09:07 memory_monitor_summary.json
[2026-03-07 09:08:57] -rw-------. 1 boinc boinc   1521291 Mar  7 09:07 agis_ddmendpoints.agis.ALL.json
[2026-03-07 09:08:57] -rw-------. 1 boinc boinc    368661 Mar  7 09:07 log.48955010._001952.job.log.tgz.1
[2026-03-07 09:08:57] -rw-------. 1 boinc boinc      6404 Mar  7 09:07 heartbeat.json
[2026-03-07 09:08:57] -rw-r--r--. 1 boinc boinc      8192 Mar  7 09:08 boinc_mmap_file
[2026-03-07 09:08:57] -rw-r--r--. 1 boinc boinc        28 Mar  7 09:08 wrapper_checkpoint.txt
[2026-03-07 09:08:57] -rw-------. 1 boinc boinc        95 Mar  7 09:08 pilot_heartbeat.json
[2026-03-07 09:08:57] -rw-------. 1 boinc boinc      4828 Mar  7 09:08 pilotlog.txt
[2026-03-07 09:08:57] -rw-------. 1 boinc boinc   1779307 Mar  7 09:08 log.48955010._001952.job.log.1
[2026-03-07 09:08:57] -rw-------. 1 boinc boinc       357 Mar  7 09:08 output.list
[2026-03-07 09:08:57] -rw-r--r--. 1 boinc boinc       620 Mar  7 09:08 runtime_log
[2026-03-07 09:08:57] -rw-------. 1 boinc boinc   2170880 Mar  7 09:08 result.tar.gz
[2026-03-07 09:08:57] -rw-r--r--. 1 boinc boinc      9205 Mar  7 09:08 runtime_log.err
[2026-03-07 09:08:57] -rw-------. 1 boinc boinc       665 Mar  7 09:08 9TYLDmyB4H9n9Rq4apOajLDm4fhM0noT9bVooX4SDmWqILDmZYPpUo.diag
[2026-03-07 09:08:57] -rw-r--r--. 1 boinc boinc     20829 Mar  7 09:08 stderr.txt
[2026-03-07 09:08:57] HITS file was successfully produced:
[2026-03-07 09:08:57] -rw-------. 1 boinc boinc 188450769 Mar  7 09:07 shared/HITS.pool.root.1
[2026-03-07 09:08:57]  *** Contents of shared directory: ***
[2026-03-07 09:08:57] total 614248
[2026-03-07 09:08:57] -rw-r--r--. 2 boinc boinc 437740517 Mar  7 05:34 ATLAS.root_0
[2026-03-07 09:08:57] -rw-r--r--. 2 boinc boinc     15845 Mar  7 05:34 start_atlas.sh
[2026-03-07 09:08:57] -rw-r--r--. 2 boinc boinc    597941 Mar  7 05:34 input.tar.gz
[2026-03-07 09:08:57] -rw-------. 1 boinc boinc 188450769 Mar  7 09:07 HITS.pool.root.1
[2026-03-07 09:08:57] -rw-------. 1 boinc boinc   2170880 Mar  7 09:08 result.tar.gz
09:08:59 (731910): run_atlas exited; CPU time 42466.388124
09:08:59 (731910): called boinc_finish(0)

</stderr_txt>
]]>

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