Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:27:16 (1538789): wrapper (7.7.26015): starting
16:27:16 (1538789): wrapper: running run_atlas (--nthreads 4)
[2026-03-07 16:27:16] Arguments: --nthreads 4
[2026-03-07 16:27:16] Threads: 4
[2026-03-07 16:27:16] Checking for CVMFS
[2026-03-07 16:27:16] No cvmfs_config command found, will try listing directly
[2026-03-07 16:27:16] CVMFS is ok
[2026-03-07 16:27:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 16:27:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-07 16:27:16] Further information can be found at the LHC@home message board.
[2026-03-07 16:27:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 16:27:16] Checking for apptainer binary...
[2026-03-07 16:27:16] which: no apptainer in ((null))
[2026-03-07 16:27:16] apptainer is not installed, using version from CVMFS
[2026-03-07 16:27:16] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 16:27:16] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot12/slots/3/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2026-03-07 16:27:16] apptainer works
[2026-03-07 16:27:16] Set ATHENA_PROC_NUMBER=4
[2026-03-07 16:27:16] Set ATHENA_CORE_NUMBER=4
[2026-03-07 16:27:16] Starting ATLAS job with PandaID=7040358260
[2026-03-07 16:27:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot12/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 21:46:11]  *** The last 200 lines of the pilot log: ***
[2026-03-07 21:46:11] 2026-03-07 20:45:15,021 | INFO     | job 7040358260 has state=finished
[2026-03-07 21:46:11] 2026-03-07 20:45:15,021 | INFO     | preparing for final server update for job 7040358260 in state='finished'
[2026-03-07 21:46:11] 2026-03-07 20:45:15,021 | INFO     | reading metadata from: /var/lib/boinc/var/slot12/slots/3/PanDA_Pilot-7040358260/jobReport.json
[2026-03-07 21:46:11] 2026-03-07 20:45:15,024 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot12/slots/3/workernode_map.json
[2026-03-07 21:46:11] 2026-03-07 20:45:15,024 | INFO     | this job has now completed (state=finished)
[2026-03-07 21:46:11] 2026-03-07 20:45:15,024 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-07 21:46:11] 2026-03-07 20:45:15,025 | INFO     | log transfer has been attempted: DONE
[2026-03-07 21:46:11] 2026-03-07 20:45:15,025 | INFO     | job 7040358260 has finished - writing final server update
[2026-03-07 21:46:11] 2026-03-07 20:45:15,025 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1504241/.job.ad'
[2026-03-07 21:46:11] 2026-03-07 20:45:15,025 | INFO     | total number of processed events: 400 (read)
[2026-03-07 21:46:11] 2026-03-07 20:45:15,029 | INFO     | time since job start (19062s) is within the limit (349056.0s)
[2026-03-07 21:46:11] 2026-03-07 20:45:15,039 | INFO     | using path: /var/lib/boinc/var/slot12/slots/3/PanDA_Pilot-7040358260/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 21:46:11] 2026-03-07 20:45:15,039 | INFO     | extracted standard info from prmon json
[2026-03-07 21:46:11] 2026-03-07 20:45:15,040 | INFO     | extracted standard memory fields from prmon json
[2026-03-07 21:46:11] 2026-03-07 20:45:15,040 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-07 21:46:11] 2026-03-07 20:45:15,040 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-07 21:46:11] 2026-03-07 20:45:15,040 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-07 21:46:11] 2026-03-07 20:45:15,053 | INFO     | fitting pss+swap vs Time
[2026-03-07 21:46:11] 2026-03-07 20:45:15,054 | INFO     | sum of square deviations: 9417545878.0
[2026-03-07 21:46:11] 2026-03-07 20:45:15,057 | INFO     | sum of deviations: 16616083348.999992
[2026-03-07 21:46:11] 2026-03-07 20:45:15,057 | INFO     | mean x: 1772906762.5
[2026-03-07 21:46:11] 2026-03-07 20:45:15,057 | INFO     | mean y: 2335644.608974359
[2026-03-07 21:46:11] 2026-03-07 20:45:15,057 | INFO     | intersect: -3125736882.7065897
[2026-03-07 21:46:11] 2026-03-07 20:45:15,058 | INFO     | chi2: 1.365733042878984
[2026-03-07 21:46:11] 2026-03-07 20:45:15,058 | INFO     | sum of square deviations: 8971993338.0
[2026-03-07 21:46:11] 2026-03-07 20:45:15,065 | INFO     | sum of deviations: 16042915515.000004
[2026-03-07 21:46:11] 2026-03-07 20:45:15,065 | INFO     | mean x: 1772906610.0
[2026-03-07 21:46:11] 2026-03-07 20:45:15,065 | INFO     | mean y: 2335448.410423453
[2026-03-07 21:46:11] 2026-03-07 20:45:15,065 | INFO     | intersect: -3167817480.677169
[2026-03-07 21:46:11] 2026-03-07 20:45:15,065 | INFO     | chi2: 1.36588357210944
[2026-03-07 21:46:11] 2026-03-07 20:45:15,066 | INFO     | current chi2=1.36588357210944 (change=-0.011021863404482057 %)
[2026-03-07 21:46:11] 2026-03-07 20:45:15,066 | INFO     | right removable region: 306
[2026-03-07 21:46:11] 2026-03-07 20:45:15,066 | INFO     | sum of square deviations: 8971993338.0
[2026-03-07 21:46:11] 2026-03-07 20:45:15,069 | INFO     | sum of deviations: -23900046928.000008
[2026-03-07 21:46:11] 2026-03-07 20:45:15,069 | INFO     | mean x: 1772906915.0
[2026-03-07 21:46:11] 2026-03-07 20:45:15,069 | INFO     | mean y: 2349400.048859935
[2026-03-07 21:46:11] 2026-03-07 20:45:15,069 | INFO     | intersect: 4725107974.557703
[2026-03-07 21:46:11] 2026-03-07 20:45:15,070 | INFO     | chi2: 0.04542676154266946
[2026-03-07 21:46:11] 2026-03-07 20:45:15,070 | INFO     | current chi2=0.04542676154266946 (change=96.67381837325182 %)
[2026-03-07 21:46:11] 2026-03-07 20:45:15,070 | INFO     | sum of square deviations: 8540720135.5
[2026-03-07 21:46:11] 2026-03-07 20:45:15,073 | INFO     | sum of deviations: -23723297476.000004
[2026-03-07 21:46:11] 2026-03-07 20:45:15,073 | INFO     | mean x: 1772907067.5
[2026-03-07 21:46:11] 2026-03-07 20:45:15,073 | INFO     | mean y: 2349328.668874172
[2026-03-07 21:46:11] 2026-03-07 20:45:15,073 | INFO     | intersect: 4926899143.242916
[2026-03-07 21:46:11] 2026-03-07 20:45:15,074 | INFO     | chi2: 0.04132225505448478
[2026-03-07 21:46:11] 2026-03-07 20:45:15,074 | INFO     | current chi2=0.04132225505448478 (change=9.035437149375722 %)
[2026-03-07 21:46:11] 2026-03-07 20:45:15,074 | INFO     | left removable region: 20
[2026-03-07 21:46:11] 2026-03-07 20:45:15,074 | INFO     | sum of square deviations: 7253894147.5
[2026-03-07 21:46:11] 2026-03-07 20:45:15,077 | INFO     | sum of deviations: -16460113821.499998
[2026-03-07 21:46:11] 2026-03-07 20:45:15,077 | INFO     | mean x: 1772907189.5
[2026-03-07 21:46:11] 2026-03-07 20:45:15,077 | INFO     | mean y: 2346578.178321678
[2026-03-07 21:46:11] 2026-03-07 20:45:15,077 | INFO     | intersect: 4025324242.4144497
[2026-03-07 21:46:11] 2026-03-07 20:45:15,083 | INFO     | chi2: 0.03476111198497229
[2026-03-07 21:46:11] 2026-03-07 20:45:15,083 | INFO     | current memory leak: -2.27 B/s (using 286 data points, chi2=0.03)
[2026-03-07 21:46:11] 2026-03-07 20:45:15,084 | INFO     | could have reported an average CPU frequency of 2514 MHz (14 samples)
[2026-03-07 21:46:11] 2026-03-07 20:45:15,084 | INFO     | ..............................
[2026-03-07 21:46:11] 2026-03-07 20:45:15,084 | INFO     | . Timing measurements:
[2026-03-07 21:46:11] 2026-03-07 20:45:15,084 | INFO     | . get job = 0 s
[2026-03-07 21:46:11] 2026-03-07 20:45:15,084 | INFO     | . initial setup = 6 s
[2026-03-07 21:46:11] 2026-03-07 20:45:15,084 | INFO     | . payload setup = 6 s
[2026-03-07 21:46:11] 2026-03-07 20:45:15,084 | INFO     | . stage-in = 0 s
[2026-03-07 21:46:11] 2026-03-07 20:45:15,085 | INFO     | . payload execution = 19035 s
[2026-03-07 21:46:11] 2026-03-07 20:45:15,085 | INFO     | . stage-out = 1 s
[2026-03-07 21:46:11] 2026-03-07 20:45:15,085 | INFO     | . log creation = 0 s
[2026-03-07 21:46:11] 2026-03-07 20:45:15,085 | INFO     | ..............................
[2026-03-07 21:46:11] 2026-03-07 20:45:15,203 | INFO     | 
[2026-03-07 21:46:11] 2026-03-07 20:45:15,204 | INFO     | job summary report
[2026-03-07 21:46:11] 2026-03-07 20:45:15,204 | INFO     | --------------------------------------------------
[2026-03-07 21:46:11] 2026-03-07 20:45:15,204 | INFO     | PanDA job id: 7040358260
[2026-03-07 21:46:11] 2026-03-07 20:45:15,204 | INFO     | task id: 48973281
[2026-03-07 21:46:11] 2026-03-07 20:45:15,204 | INFO     | errors: (none)
[2026-03-07 21:46:11] 2026-03-07 20:45:15,204 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 21:46:11] 2026-03-07 20:45:15,204 | INFO     | pilot state: finished 
[2026-03-07 21:46:11] 2026-03-07 20:45:15,204 | INFO     | transexitcode: 0
[2026-03-07 21:46:11] 2026-03-07 20:45:15,204 | INFO     | exeerrorcode: 0
[2026-03-07 21:46:11] 2026-03-07 20:45:15,204 | INFO     | exeerrordiag: 
[2026-03-07 21:46:11] 2026-03-07 20:45:15,205 | INFO     | exitcode: 0
[2026-03-07 21:46:11] 2026-03-07 20:45:15,205 | INFO     | exitmsg: OK
[2026-03-07 21:46:11] 2026-03-07 20:45:15,205 | INFO     | cpuconsumptiontime: 50383 s
[2026-03-07 21:46:11] 2026-03-07 20:45:15,205 | INFO     | nevents: 400
[2026-03-07 21:46:11] 2026-03-07 20:45:15,205 | INFO     | neventsw: 0
[2026-03-07 21:46:11] 2026-03-07 20:45:15,205 | INFO     | pid: 1547470
[2026-03-07 21:46:11] 2026-03-07 20:45:15,205 | INFO     | pgrp: 1547470
[2026-03-07 21:46:11] 2026-03-07 20:45:15,205 | INFO     | corecount: 4
[2026-03-07 21:46:11] 2026-03-07 20:45:15,205 | INFO     | event service: False
[2026-03-07 21:46:11] 2026-03-07 20:45:15,205 | INFO     | sizes: {0: 2295426, 1: 2295887, 12: 2295887, 19045: 2329341, 19047: 2338361, 19050: 2338739}
[2026-03-07 21:46:11] 2026-03-07 20:45:15,205 | INFO     | --------------------------------------------------
[2026-03-07 21:46:11] 2026-03-07 20:45:15,205 | INFO     | 
[2026-03-07 21:46:11] 2026-03-07 20:45:15,206 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot12/slots/3
[2026-03-07 21:46:11] 2026-03-07 20:45:15,233 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 21:46:11] 2026-03-07 20:45:15,233 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 21:46:11] 2026-03-07 20:45:15,233 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 21:46:11] 2026-03-07 20:45:15,233 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 21:46:11] 2026-03-07 20:45:15,234 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 21:46:11] 2026-03-07 20:45:15,234 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 21:46:11] 2026-03-07 20:45:15,234 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 21:46:11] 2026-03-07 20:45:15,234 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 21:46:11] 2026-03-07 20:45:15,234 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 21:46:11] 2026-03-07 20:45:15,234 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 21:46:11] 2026-03-07 20:45:15,234 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 21:46:11] 2026-03-07 20:45:15,234 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 21:46:11] 2026-03-07 20:45:15,234 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 21:46:11] 2026-03-07 20:45:15,234 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 21:46:11] 2026-03-07 20:45:15,234 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 21:46:11] 2026-03-07 20:45:15,235 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 21:46:11] 2026-03-07 20:45:15,235 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 21:46:11] 2026-03-07 20:45:15,235 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 21:46:11] 2026-03-07 20:45:15,235 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 21:46:11] 2026-03-07 20:45:15,235 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 21:46:11] 2026-03-07 20:45:15,235 | INFO     | job 7040358260 has completed (purged errors)
[2026-03-07 21:46:11] 2026-03-07 20:45:15,235 | INFO     | overall cleanup function is called
[2026-03-07 21:46:11] 2026-03-07 20:45:16,243 | INFO     | --- collectZombieJob: --- 10, [1547470]
[2026-03-07 21:46:11] 2026-03-07 20:45:16,243 | INFO     | zombie collector waiting for pid 1547470
[2026-03-07 21:46:11] 2026-03-07 20:45:16,243 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 21:46:11] 2026-03-07 20:45:16,243 | INFO     | collected zombie processes
[2026-03-07 21:46:11] 2026-03-07 20:45:16,243 | INFO     | will attempt to kill all subprocesses of pid=1547470
[2026-03-07 21:46:11] 2026-03-07 20:45:16,751 | INFO     | process IDs to be killed: [1547470] (in reverse order)
[2026-03-07 21:46:11] 2026-03-07 20:45:16,926 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 21:46:11] 2026-03-07 20:45:16,927 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 21:46:11] 2026-03-07 20:45:16,939 | INFO     | did not find any defunct processes belonging to 1547470
[2026-03-07 21:46:11] 2026-03-07 20:45:16,952 | INFO     | did not find any defunct processes belonging to 1547470
[2026-03-07 21:46:11] 2026-03-07 20:45:16,952 | INFO     | ready for new job
[2026-03-07 21:46:11] 2026-03-07 20:45:16,952 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 21:46:11] 2026-03-07 20:45:16,955 | INFO     | **************************************
[2026-03-07 21:46:11] 2026-03-07 20:45:16,955 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 21:46:11] 2026-03-07 20:45:16,955 | INFO     | **************************************
[2026-03-07 21:46:11] 2026-03-07 20:45:16,955 | INFO     | 
[2026-03-07 21:46:11] 2026-03-07 20:45:16,959 | INFO     | architecture information:
[2026-03-07 21:46:11] 2026-03-07 20:45:16,964 | INFO     | executing command: cat /etc/os-release
[2026-03-07 21:46:11] 2026-03-07 20:45:16,984 | INFO     | cat /etc/os-release:
[2026-03-07 21:46:11] NAME="CentOS Linux"
[2026-03-07 21:46:11] VERSION="7 (Core)"
[2026-03-07 21:46:11] ID="centos"
[2026-03-07 21:46:11] ID_LIKE="rhel fedora"
[2026-03-07 21:46:11] VERSION_ID="7"
[2026-03-07 21:46:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 21:46:11] ANSI_COLOR="0;31"
[2026-03-07 21:46:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 21:46:11] HOME_URL="https://www.centos.org/"
[2026-03-07 21:46:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 21:46:11] 
[2026-03-07 21:46:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 21:46:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 21:46:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 21:46:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 21:46:11] 
[2026-03-07 21:46:11] 2026-03-07 20:45:16,984 | INFO     | **************************************
[2026-03-07 21:46:11] 2026-03-07 20:45:17,487 | INFO     | executing command: df -mP /var/lib/boinc/var/slot12/slots/3
[2026-03-07 21:46:11] 2026-03-07 20:45:17,507 | INFO     | sufficient remaining disk space (20521680896 B)
[2026-03-07 21:46:11] 2026-03-07 20:45:17,508 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 21:46:11] 2026-03-07 20:45:17,508 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 21:46:11] 2026-03-07 20:45:17,508 | INFO     | update_server=False
[2026-03-07 21:46:11] 2026-03-07 20:45:17,508 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 21:46:11] 2026-03-07 20:45:17,508 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 21:46:11] 2026-03-07 20:45:17,509 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 21:46:11] 2026-03-07 20:45:17,973 | INFO     | all payload control threads have been joined
[2026-03-07 21:46:11] 2026-03-07 20:45:18,064 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 21:46:11] 2026-03-07 20:45:18,064 | INFO     | aborting loop
[2026-03-07 21:46:11] 2026-03-07 20:45:18,429 | INFO     | all data control threads have been joined
[2026-03-07 21:46:11] 2026-03-07 20:45:18,513 | INFO     | [job] retrieve thread has finished
[2026-03-07 21:46:11] 2026-03-07 20:45:18,789 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 21:46:11] 2026-03-07 20:45:18,855 | INFO     | all job control threads have been joined
[2026-03-07 21:46:11] 2026-03-07 20:45:18,952 | INFO     | [payload] validate_post thread has finished
[2026-03-07 21:46:11] 2026-03-07 20:45:18,978 | INFO     | [payload] control thread has finished
[2026-03-07 21:46:11] 2026-03-07 20:45:19,069 | INFO     | [job] job monitor thread has finished
[2026-03-07 21:46:11] 2026-03-07 20:45:19,314 | INFO     | [data] copytool_in thread has finished
[2026-03-07 21:46:11] 2026-03-07 20:45:19,434 | INFO     | [data] control thread has finished
[2026-03-07 21:46:11] 2026-03-07 20:45:19,506 | INFO     | [payload] failed_post thread has finished
[2026-03-07 21:46:11] 2026-03-07 20:45:19,514 | INFO     | [data] copytool_out thread has finished
[2026-03-07 21:46:11] 2026-03-07 20:45:19,789 | INFO     | [job] validate thread has finished
[2026-03-07 21:46:11] 2026-03-07 20:45:19,802 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 21:46:11] 2026-03-07 20:45:19,816 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 21:46:11] 2026-03-07 20:45:19,830 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 21:46:11] 2026-03-07 20:45:19,860 | INFO     | [job] control thread has finished
[2026-03-07 21:46:11] 2026-03-07 20:45:20,213 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 21:46:11] 2026-03-07 20:45:21,218 | INFO     | [job] queue monitor thread has finished
[2026-03-07 21:46:11] 2026-03-07 20:45:21,514 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 21:46:11] 2026-03-07 20:45:48,634 | INFO     | PID=1542560 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-07 21:46:11] 2026-03-07 20:45:48,634 | INFO     | .. there are 14 such processes running
[2026-03-07 21:46:11] 2026-03-07 20:45:48,634 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 21:46:11] 2026-03-07 20:45:48,634 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 21:46:11] 2026-03-07 20:45:48,634 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 21:46:11] 2026-03-07 20:46:05,091 | INFO     | [monitor] cgroup control has ended
[2026-03-07 21:46:11] 2026-03-07 20:46:05,995 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22883825674048)>', '<ExcThread(monitor, started 22883518641920)>']
[2026-03-07 21:46:11] 2026-03-07 20:46:06,729 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 21:46:11] 2026-03-07 20:46:06,729 | INFO     | [monitor] control thread has ended
[2026-03-07 21:46:11] 2026-03-07 20:46:11,020 | INFO     | all workflow threads have been joined
[2026-03-07 21:46:11] 2026-03-07 20:46:11,020 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 21:46:11] 2026-03-07 20:46:11,020 | INFO     | traces error code: 0
[2026-03-07 21:46:11] 2026-03-07 20:46:11,021 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 21:46:11] 2026-03-07 20:46:11,172 [wrapper] ==== pilot stdout END ====
[2026-03-07 21:46:11] 2026-03-07 20:46:11,178 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 21:46:11] 2026-03-07 20:46:11,210 [wrapper] pilotpid: 1542560
[2026-03-07 21:46:11] 2026-03-07 20:46:11,220 [wrapper] Pilot exit status: 0
[2026-03-07 21:46:11] 2026-03-07 20:46:11,286 [wrapper] pandaids: 7040358260
[2026-03-07 21:46:11] 2026-03-07 20:46:11,374 [wrapper] cleanup supervisor_pilot 1963473 1542561
[2026-03-07 21:46:11] 2026-03-07 20:46:11,378 [wrapper] Test setup, not cleaning
[2026-03-07 21:46:11] 2026-03-07 20:46:11,380 [wrapper] apfmon messages muted
[2026-03-07 21:46:11] 2026-03-07 20:46:11,383 [wrapper] ==== wrapper stdout END ====
[2026-03-07 21:46:11] 2026-03-07 20:46:11,419 [wrapper] ==== wrapper stderr END ====
[2026-03-07 21:46:11]  *** Error codes and diagnostics ***
[2026-03-07 21:46:11]     "exeErrorCode": 0,
[2026-03-07 21:46:11]     "exeErrorDiag": "",
[2026-03-07 21:46:11]     "pilotErrorCode": 0,
[2026-03-07 21:46:11]     "pilotErrorDiag": "",
[2026-03-07 21:46:11]  *** Listing of results directory ***
[2026-03-07 21:46:11] total 502936
[2026-03-07 21:46:11] -rw-r--r--. 1 boinc boinc      5111 Mar  4 18:22 queuedata.json
[2026-03-07 21:46:11] -rw-r--r--. 1 boinc boinc    584627 Mar  4 18:22 pilot3.tar.gz
[2026-03-07 21:46:11] -rwx------. 1 boinc boinc     36322 Mar  4 18:22 runpilot2-wrapper.sh
[2026-03-07 21:46:11] -rw-r--r--. 1 boinc boinc       100 Mar  7 16:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 21:46:11] -rwxr-xr-x. 1 boinc boinc      7986 Mar  7 16:27 run_atlas
[2026-03-07 21:46:11] -rw-r--r--. 1 boinc boinc       105 Mar  7 16:27 job.xml
[2026-03-07 21:46:11] -rw-r--r--. 2 boinc boinc 293972128 Mar  7 16:27 EVNT.48716896._000041.pool.root.1
[2026-03-07 21:46:11] -rw-r--r--. 1 boinc boinc      6560 Mar  7 16:27 init_data.xml
[2026-03-07 21:46:11] -rw-r--r--. 2 boinc boinc     15845 Mar  7 16:27 start_atlas.sh
[2026-03-07 21:46:11] drwxrwx--x. 2 boinc boinc      4096 Mar  7 16:27 shared
[2026-03-07 21:46:11] -rw-r--r--. 2 boinc boinc    597952 Mar  7 16:27 input.tar.gz
[2026-03-07 21:46:11] -rw-r--r--. 1 boinc boinc         0 Mar  7 16:27 boinc_lockfile
[2026-03-07 21:46:11] -rw-r--r--. 1 boinc boinc      2597 Mar  7 16:27 pandaJob.out
[2026-03-07 21:46:11] -rw-------. 1 boinc boinc    999177 Mar  7 16:27 agis_schedconf.cvmfs.json
[2026-03-07 21:46:11] -rw-------. 1 boinc boinc       452 Mar  7 16:27 workernode_map.json
[2026-03-07 21:46:11] drwx------. 5 boinc boinc      4096 Mar  7 16:27 pilot3
[2026-03-07 21:46:11] -rw-------. 1 boinc boinc 210949321 Mar  7 21:44 HITS.48973281._001005.pool.root.1
[2026-03-07 21:46:11] -rw-r--r--. 1 boinc boinc       531 Mar  7 21:44 boinc_task_state.xml
[2026-03-07 21:46:11] -rw-------. 1 boinc boinc      1034 Mar  7 21:45 memory_monitor_summary.json
[2026-03-07 21:46:11] -rw-------. 1 boinc boinc        95 Mar  7 21:45 pilot_heartbeat.json
[2026-03-07 21:46:11] -rw-------. 1 boinc boinc   1521291 Mar  7 21:45 agis_ddmendpoints.agis.ALL.json
[2026-03-07 21:46:11] -rw-------. 1 boinc boinc    457442 Mar  7 21:45 log.48973281._001005.job.log.tgz.1
[2026-03-07 21:46:11] -rw-------. 1 boinc boinc      6396 Mar  7 21:45 heartbeat.json
[2026-03-07 21:46:11] -rw-r--r--. 1 boinc boinc      8192 Mar  7 21:46 boinc_mmap_file
[2026-03-07 21:46:11] -rw-r--r--. 1 boinc boinc        28 Mar  7 21:46 wrapper_checkpoint.txt
[2026-03-07 21:46:11] -rw-------. 1 boinc boinc      4829 Mar  7 21:46 pilotlog.txt
[2026-03-07 21:46:11] -rw-------. 1 boinc boinc   2614956 Mar  7 21:46 log.48973281._001005.job.log.1
[2026-03-07 21:46:11] -rw-------. 1 boinc boinc       357 Mar  7 21:46 output.list
[2026-03-07 21:46:11] -rw-r--r--. 1 boinc boinc       620 Mar  7 21:46 runtime_log
[2026-03-07 21:46:11] -rw-------. 1 boinc boinc   3092480 Mar  7 21:46 result.tar.gz
[2026-03-07 21:46:11] -rw-r--r--. 1 boinc boinc      9205 Mar  7 21:46 runtime_log.err
[2026-03-07 21:46:11] -rw-------. 1 boinc boinc       665 Mar  7 21:46 cUbLDmk64H9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm67KLDmxxkG7n.diag
[2026-03-07 21:46:11] -rw-r--r--. 1 boinc boinc     21127 Mar  7 21:46 stderr.txt
[2026-03-07 21:46:11] HITS file was successfully produced:
[2026-03-07 21:46:11] -rw-------. 1 boinc boinc 210949321 Mar  7 21:44 shared/HITS.pool.root.1
[2026-03-07 21:46:11]  *** Contents of shared directory: ***
[2026-03-07 21:46:11] total 496720
[2026-03-07 21:46:11] -rw-r--r--. 2 boinc boinc 293972128 Mar  7 16:27 ATLAS.root_0
[2026-03-07 21:46:11] -rw-r--r--. 2 boinc boinc     15845 Mar  7 16:27 start_atlas.sh
[2026-03-07 21:46:11] -rw-r--r--. 2 boinc boinc    597952 Mar  7 16:27 input.tar.gz
[2026-03-07 21:46:11] -rw-------. 1 boinc boinc 210949321 Mar  7 21:44 HITS.pool.root.1
[2026-03-07 21:46:11] -rw-------. 1 boinc boinc   3092480 Mar  7 21:46 result.tar.gz
21:46:13 (1538789): run_atlas exited; CPU time 51246.719354
21:46:13 (1538789): called boinc_finish(0)

</stderr_txt>
]]>

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