Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:37:13 (912757): wrapper (7.7.26015): starting
05:37:13 (912757): wrapper: running run_atlas (--nthreads 3)
[2026-03-05 05:37:13] Arguments: --nthreads 3
[2026-03-05 05:37:13] Threads: 3
[2026-03-05 05:37:13] Checking for CVMFS
[2026-03-05 05:37:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-05 05:37:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-05 05:37:14] Running cvmfs_config stat atlas.cern.ch
[2026-03-05 05:37:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-05 05:37:14] 2.9.2.0 3705770 10900 86180 156903 2 49 35664291 36864000 0 130560 0 3838295 99.974 480628 4826 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-05 05:37:14] CVMFS is ok
[2026-03-05 05:37:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-05 05:37:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-05 05:37:14] Further information can be found at the LHC@home message board.
[2026-03-05 05:37:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 05:37:14] Checking for apptainer binary...
[2026-03-05 05:37:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-05 05:37:14] Running /usr/bin/apptainer --version
[2026-03-05 05:37:14] apptainer version 1.4.1-1.1
[2026-03-05 05:37:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 05:37:14] atlasA223
[2026-03-05 05:37:14] apptainer works
[2026-03-05 05:37:14] Set ATHENA_PROC_NUMBER=3
[2026-03-05 05:37:14] Set ATHENA_CORE_NUMBER=3
[2026-03-05 05:37:14] Starting ATLAS job with PandaID=7039362932
[2026-03-05 05:37:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 07:07:00]  *** The last 200 lines of the pilot log: ***
[2026-03-05 07:07:00] 2026-03-05 06:06:28,551 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-05 07:07:00] 2026-03-05 06:06:28,551 | INFO     | job 7039362932 has completed (purged errors)
[2026-03-05 07:07:00] 2026-03-05 06:06:28,551 | INFO     | overall cleanup function is called
[2026-03-05 07:07:00] 2026-03-05 06:06:29,557 | INFO     | --- collectZombieJob: --- 10, [921229]
[2026-03-05 07:07:00] 2026-03-05 06:06:29,557 | INFO     | zombie collector waiting for pid 921229
[2026-03-05 07:07:00] 2026-03-05 06:06:29,558 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 07:07:00] 2026-03-05 06:06:29,558 | INFO     | collected zombie processes
[2026-03-05 07:07:00] 2026-03-05 06:06:29,558 | INFO     | will attempt to kill all subprocesses of pid=921229
[2026-03-05 07:07:00] 2026-03-05 06:06:29,609 | INFO     | process IDs to be killed: [921229] (in reverse order)
[2026-03-05 07:07:00] 2026-03-05 06:06:29,636 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 07:07:00] 2026-03-05 06:06:29,636 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 07:07:00] 2026-03-05 06:06:29,638 | INFO     | did not find any defunct processes belonging to 921229
[2026-03-05 07:07:00] 2026-03-05 06:06:29,639 | INFO     | did not find any defunct processes belonging to 921229
[2026-03-05 07:07:00] 2026-03-05 06:06:29,639 | INFO     | ready for new job
[2026-03-05 07:07:00] 2026-03-05 06:06:29,639 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 07:07:00] 2026-03-05 06:06:29,640 | INFO     | **************************************
[2026-03-05 07:07:00] 2026-03-05 06:06:29,640 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 07:07:00] 2026-03-05 06:06:29,640 | INFO     | **************************************
[2026-03-05 07:07:00] 2026-03-05 06:06:29,640 | INFO     | 
[2026-03-05 07:07:00] 2026-03-05 06:06:29,640 | INFO     | architecture information:
[2026-03-05 07:07:00] 2026-03-05 06:06:29,640 | INFO     | executing command: cat /etc/os-release
[2026-03-05 07:07:00] 2026-03-05 06:06:29,649 | INFO     | cat /etc/os-release:
[2026-03-05 07:07:00] NAME="CentOS Linux"
[2026-03-05 07:07:00] VERSION="7 (Core)"
[2026-03-05 07:07:00] ID="centos"
[2026-03-05 07:07:00] ID_LIKE="rhel fedora"
[2026-03-05 07:07:00] VERSION_ID="7"
[2026-03-05 07:07:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 07:07:00] ANSI_COLOR="0;31"
[2026-03-05 07:07:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 07:07:00] HOME_URL="https://www.centos.org/"
[2026-03-05 07:07:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 07:07:00] 
[2026-03-05 07:07:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 07:07:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 07:07:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 07:07:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 07:07:00] 
[2026-03-05 07:07:00] 2026-03-05 06:06:29,649 | INFO     | **************************************
[2026-03-05 07:07:00] 2026-03-05 06:06:30,152 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-05 07:07:00] 2026-03-05 06:06:30,165 | INFO     | sufficient remaining disk space (367459827712 B)
[2026-03-05 07:07:00] 2026-03-05 06:06:30,165 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 07:07:00] 2026-03-05 06:06:30,165 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 07:07:00] 2026-03-05 06:06:30,165 | INFO     | update_server=False
[2026-03-05 07:07:00] 2026-03-05 06:06:30,165 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 07:07:00] 2026-03-05 06:06:30,165 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 07:07:00] 2026-03-05 06:06:30,165 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 07:07:00] 2026-03-05 06:06:30,165 | INFO     | aborting loop
[2026-03-05 07:07:00] 2026-03-05 06:06:30,628 | INFO     | [monitor] cgroup control has ended
[2026-03-05 07:07:00] 2026-03-05 06:06:30,829 | INFO     | all payload control threads have been joined
[2026-03-05 07:07:00] 2026-03-05 06:06:30,960 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 07:07:00] 2026-03-05 06:06:31,082 | INFO     | all data control threads have been joined
[2026-03-05 07:07:00] 2026-03-05 06:06:31,168 | INFO     | [job] retrieve thread has finished
[2026-03-05 07:07:00] 2026-03-05 06:06:31,170 | INFO     | [job] job monitor thread has finished
[2026-03-05 07:07:00] 2026-03-05 06:06:31,171 | INFO     | [job] queue monitor thread has finished
[2026-03-05 07:07:00] 2026-03-05 06:06:31,412 | INFO     | [payload] validate_post thread has finished
[2026-03-05 07:07:00] 2026-03-05 06:06:31,671 | INFO     | all job control threads have been joined
[2026-03-05 07:07:00] 2026-03-05 06:06:31,832 | INFO     | [payload] control thread has finished
[2026-03-05 07:07:00] 2026-03-05 06:06:31,893 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 07:07:00] 2026-03-05 06:06:31,908 | INFO     | [payload] failed_post thread has finished
[2026-03-05 07:07:00] 2026-03-05 06:06:32,088 | INFO     | [data] control thread has finished
[2026-03-05 07:07:00] 2026-03-05 06:06:32,153 | INFO     | [job] validate thread has finished
[2026-03-05 07:07:00] 2026-03-05 06:06:32,187 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 07:07:00] 2026-03-05 06:06:32,195 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 07:07:00] 2026-03-05 06:06:32,395 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 07:07:00] 2026-03-05 06:06:32,398 | INFO     | [data] copytool_in thread has finished
[2026-03-05 07:07:00] 2026-03-05 06:06:32,677 | INFO     | [job] control thread has finished
[2026-03-05 07:07:00] 2026-03-05 06:06:32,967 | INFO     | [data] copytool_out thread has finished
[2026-03-05 07:07:00] 2026-03-05 06:06:35,900 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 07:07:00] 2026-03-05 06:06:41,140 | INFO     | job.realtimelogging is not enabled
[2026-03-05 07:07:00] 2026-03-05 06:06:42,142 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 07:07:00] 2026-03-05 06:06:43,595 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140387780900672)>', '<ExcThread(monitor, started 140386911647488)>']
[2026-03-05 07:07:00] 2026-03-05 06:06:48,621 | INFO     | all workflow threads have been joined
[2026-03-05 07:07:00] 2026-03-05 06:06:48,621 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 07:07:00] 2026-03-05 06:06:48,621 | INFO     | traces error code: 0
[2026-03-05 07:07:00] 2026-03-05 06:06:48,622 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 07:07:00] 2026-03-05 06:07:00,529 | INFO     | PID=916807 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-05 07:07:00] 2026-03-05 06:07:00,530 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 07:07:00] 2026-03-05 06:07:00,530 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 07:07:00] 2026-03-05 06:07:00,530 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 07:07:00] 2026-03-05 06:07:00,530 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 07:07:00] 2026-03-05 06:07:00,530 | INFO     | [monitor] control thread has ended
[2026-03-05 07:07:00] 2026-03-05 06:07:00,577 [wrapper] ==== pilot stdout END ====
[2026-03-05 07:07:00] 2026-03-05 06:07:00,579 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 07:07:00] 2026-03-05 06:07:00,582 [wrapper] pilotpid: 916807
[2026-03-05 07:07:00] 2026-03-05 06:07:00,584 [wrapper] Pilot exit status: 0
[2026-03-05 07:07:00] 2026-03-05 06:07:00,591 [wrapper] pandaids: 7039362932
[2026-03-05 07:07:00] 2026-03-05 06:07:00,608 [wrapper] cleanup supervisor_pilot  926504 916808
[2026-03-05 07:07:00] 2026-03-05 06:07:00,611 [wrapper] Test setup, not cleaning
[2026-03-05 07:07:00] 2026-03-05 06:07:00,613 [wrapper] apfmon messages muted
[2026-03-05 07:07:00] 2026-03-05 06:07:00,615 [wrapper] ==== wrapper stdout END ====
[2026-03-05 07:07:00] 2026-03-05 06:07:00,617 [wrapper] ==== wrapper stderr END ====
[2026-03-05 07:07:00]  *** Error codes and diagnostics ***
[2026-03-05 07:07:00]     "exeErrorCode": 0,
[2026-03-05 07:07:00]     "exeErrorDiag": "",
[2026-03-05 07:07:00]     "pilotErrorCode": 0,
[2026-03-05 07:07:00]     "pilotErrorDiag": "",
[2026-03-05 07:07:00]  *** Listing of results directory ***
[2026-03-05 07:07:00] total 447436
[2026-03-05 07:07:00] -rw-r--r-- 1 boinc boinc    584627 Mar  4 12:53 pilot3.tar.gz
[2026-03-05 07:07:00] -rwx------ 1 boinc boinc     36322 Mar  4 12:54 runpilot2-wrapper.sh
[2026-03-05 07:07:00] -rw-r--r-- 1 boinc boinc      5111 Mar  4 12:55 queuedata.json
[2026-03-05 07:07:00] -rw-r--r-- 1 boinc boinc       100 Mar  5 05:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 07:07:00] -rwxr-xr-x 1 boinc boinc      7986 Mar  5 05:37 run_atlas
[2026-03-05 07:07:00] -rw-r--r-- 1 boinc boinc       105 Mar  5 05:37 job.xml
[2026-03-05 07:07:00] -rw-r--r-- 2 boinc boinc 263393647 Mar  5 05:37 EVNT.48958575._000007.pool.root.1
[2026-03-05 07:07:00] -rw-r--r-- 2 boinc boinc    597935 Mar  5 05:37 input.tar.gz
[2026-03-05 07:07:00] drwxrwx--x 2 boinc boinc      4096 Mar  5 05:37 shared
[2026-03-05 07:07:00] -rw-r--r-- 2 boinc boinc     15845 Mar  5 05:37 start_atlas.sh
[2026-03-05 07:07:00] -rw-r--r-- 1 boinc boinc         0 Mar  5 05:37 boinc_setup_complete
[2026-03-05 07:07:00] -rw-r--r-- 1 boinc boinc      6447 Mar  5 05:37 init_data.xml
[2026-03-05 07:07:00] -rw-r--r-- 1 boinc boinc         0 Mar  5 05:37 boinc_lockfile
[2026-03-05 07:07:00] -rw-r--r-- 1 boinc boinc      2536 Mar  5 05:37 pandaJob.out
[2026-03-05 07:07:00] -rw------- 1 boinc boinc    997749 Mar  5 05:37 agis_schedconf.cvmfs.json
[2026-03-05 07:07:00] -rw------- 1 boinc boinc   1521291 Mar  5 05:37 agis_ddmendpoints.agis.ALL.json
[2026-03-05 07:07:00] -rw------- 1 boinc boinc       426 Mar  5 05:37 workernode_map.json
[2026-03-05 07:07:00] drwx------ 5 boinc boinc      4096 Mar  5 05:37 pilot3
[2026-03-05 07:07:00] -rw------- 1 boinc boinc 188785344 Mar  5 07:06 HITS.48958577._000112.pool.root.1
[2026-03-05 07:07:00] -rw-r--r-- 1 boinc boinc       529 Mar  5 07:06 boinc_task_state.xml
[2026-03-05 07:07:00] -rw------- 1 boinc boinc      1026 Mar  5 07:06 memory_monitor_summary.json
[2026-03-05 07:07:00] -rw------- 1 boinc boinc    256725 Mar  5 07:06 log.48958577._000112.job.log.tgz.1
[2026-03-05 07:07:00] -rw------- 1 boinc boinc      6297 Mar  5 07:06 heartbeat.json
[2026-03-05 07:07:00] -rw-r--r-- 1 boinc boinc      8192 Mar  5 07:06 boinc_mmap_file
[2026-03-05 07:07:00] -rw-r--r-- 1 boinc boinc        27 Mar  5 07:06 wrapper_checkpoint.txt
[2026-03-05 07:07:00] -rw------- 1 boinc boinc       746 Mar  5 07:07 pilotlog.txt
[2026-03-05 07:07:00] -rw------- 1 boinc boinc        95 Mar  5 07:07 pilot_heartbeat.json
[2026-03-05 07:07:00] -rw------- 1 boinc boinc    777999 Mar  5 07:07 log.48958577._000112.job.log.1
[2026-03-05 07:07:00] -rw------- 1 boinc boinc       357 Mar  5 07:07 output.list
[2026-03-05 07:07:00] -rw-r--r-- 1 boinc boinc       620 Mar  5 07:07 runtime_log
[2026-03-05 07:07:00] -rw------- 1 boinc boinc   1054720 Mar  5 07:07 result.tar.gz
[2026-03-05 07:07:00] -rw-r--r-- 1 boinc boinc      8911 Mar  5 07:07 runtime_log.err
[2026-03-05 07:07:00] -rw------- 1 boinc boinc       660 Mar  5 07:07 ptONDmKzzH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmVMILDmnue0Bo.diag
[2026-03-05 07:07:00] -rw-r--r-- 1 boinc boinc     10992 Mar  5 07:07 stderr.txt
[2026-03-05 07:07:00] HITS file was successfully produced:
[2026-03-05 07:07:00] -rw------- 1 boinc boinc 188785344 Mar  5 07:06 shared/HITS.pool.root.1
[2026-03-05 07:07:00]  *** Contents of shared directory: ***
[2026-03-05 07:07:00] total 443228
[2026-03-05 07:07:00] -rw-r--r-- 2 boinc boinc 263393647 Mar  5 05:37 ATLAS.root_0
[2026-03-05 07:07:00] -rw-r--r-- 2 boinc boinc    597935 Mar  5 05:37 input.tar.gz
[2026-03-05 07:07:00] -rw-r--r-- 2 boinc boinc     15845 Mar  5 05:37 start_atlas.sh
[2026-03-05 07:07:00] -rw------- 1 boinc boinc 188785344 Mar  5 07:06 HITS.pool.root.1
[2026-03-05 07:07:00] -rw------- 1 boinc boinc   1054720 Mar  5 07:07 result.tar.gz
07:07:01 (912757): run_atlas exited; CPU time 15356.769435
07:07:01 (912757): called boinc_finish(0)

</stderr_txt>
]]>

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