Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:20:16 (16871): wrapper (7.7.26015): starting
00:20:16 (16871): wrapper: running run_atlas (--nthreads 8)
[2026-03-05 00:20:16] Arguments: --nthreads 8
[2026-03-05 00:20:16] Threads: 8
[2026-03-05 00:20:16] Checking for CVMFS
[2026-03-05 00:20:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-05 00:20:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-05 00:20:18] Running cvmfs_config stat atlas.cern.ch
[2026-03-05 00:20:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-05 00:20:19] 2.11.2.0 20999 113826 131336 156896 2 93 21945013 25165824 1088 130560 155 33825431 99.823 22716148 792 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-05 00:20:19] CVMFS is ok
[2026-03-05 00:20:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 00:20:19] Checking for apptainer binary...
[2026-03-05 00:20:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-05 00:20:19] Running /usr/bin/apptainer --version
[2026-03-05 00:20:20] apptainer version 1.3.2-1.el7
[2026-03-05 00:20:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 00:20:39] cg-vwn368.simple-grid.lan
[2026-03-05 00:20:39] apptainer works
[2026-03-05 00:20:40] Set ATHENA_PROC_NUMBER=8
[2026-03-05 00:20:40] Set ATHENA_CORE_NUMBER=8
[2026-03-05 00:20:40] Starting ATLAS job with PandaID=7038985245
[2026-03-05 00:20:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 04:05:30]  *** The last 200 lines of the pilot log: ***
[2026-03-05 04:05:30] 2026-03-05 03:04:41,582 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-7038985245/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 04:05:30] 2026-03-05 03:04:41,582 | INFO     | extracted standard info from prmon json
[2026-03-05 04:05:30] 2026-03-05 03:04:41,582 | INFO     | extracted standard memory fields from prmon json
[2026-03-05 04:05:30] 2026-03-05 03:04:41,582 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-05 04:05:30] 2026-03-05 03:04:41,583 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-05 04:05:30] 2026-03-05 03:04:41,583 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-05 04:05:30] 2026-03-05 03:04:41,587 | INFO     | fitting pss+swap vs Time
[2026-03-05 04:05:30] 2026-03-05 03:04:41,587 | INFO     | sum of square deviations: 2830787960.0
[2026-03-05 04:05:30] 2026-03-05 03:04:41,589 | INFO     | sum of deviations: 63324442027.0
[2026-03-05 04:05:30] 2026-03-05 03:04:41,589 | INFO     | mean x: 1772673468.0
[2026-03-05 04:05:30] 2026-03-05 03:04:41,589 | INFO     | mean y: 2455988.0813397127
[2026-03-05 04:05:30] 2026-03-05 03:04:41,589 | INFO     | intersect: -39652071247.214325
[2026-03-05 04:05:30] 2026-03-05 03:04:41,590 | INFO     | chi2: 7.422405558406664
[2026-03-05 04:05:30] 2026-03-05 03:04:41,590 | INFO     | sum of square deviations: 2632440055.0
[2026-03-05 04:05:30] 2026-03-05 03:04:41,592 | INFO     | sum of deviations: 75714607758.00002
[2026-03-05 04:05:30] 2026-03-05 03:04:41,592 | INFO     | mean x: 1772673315.5
[2026-03-05 04:05:30] 2026-03-05 03:04:41,592 | INFO     | mean y: 2465306.970588235
[2026-03-05 04:05:30] 2026-03-05 03:04:41,592 | INFO     | intersect: -50983411659.62035
[2026-03-05 04:05:30] 2026-03-05 03:04:41,593 | INFO     | chi2: 6.729574051257028
[2026-03-05 04:05:30] 2026-03-05 03:04:41,593 | INFO     | current chi2=6.729574051257028 (change=9.334325667032981 %)
[2026-03-05 04:05:30] 2026-03-05 03:04:41,593 | INFO     | right removable region: 203
[2026-03-05 04:05:30] 2026-03-05 03:04:41,594 | INFO     | sum of square deviations: 2632440055.0
[2026-03-05 04:05:30] 2026-03-05 03:04:41,595 | INFO     | sum of deviations: -7717563169.000002
[2026-03-05 04:05:30] 2026-03-05 03:04:41,595 | INFO     | mean x: 1772673620.5
[2026-03-05 04:05:30] 2026-03-05 03:04:41,596 | INFO     | mean y: 2510556.9411764704
[2026-03-05 04:05:30] 2026-03-05 03:04:41,596 | INFO     | intersect: 5199483843.471983
[2026-03-05 04:05:30] 2026-03-05 03:04:41,596 | INFO     | chi2: 2.6837428851440004
[2026-03-05 04:05:30] 2026-03-05 03:04:41,596 | INFO     | current chi2=2.6837428851440004 (change=63.8426805969343 %)
[2026-03-05 04:05:30] 2026-03-05 03:04:41,597 | INFO     | sum of square deviations: 2443580700.0
[2026-03-05 04:05:30] 2026-03-05 03:04:41,601 | INFO     | sum of deviations: -47994751810.0
[2026-03-05 04:05:30] 2026-03-05 03:04:41,602 | INFO     | mean x: 1772673773.0
[2026-03-05 04:05:30] 2026-03-05 03:04:41,602 | INFO     | mean y: 2542903.4572864324
[2026-03-05 04:05:30] 2026-03-05 03:04:41,602 | INFO     | intersect: 34819906526.9428
[2026-03-05 04:05:30] 2026-03-05 03:04:41,602 | INFO     | chi2: 1.005378740063134
[2026-03-05 04:05:30] 2026-03-05 03:04:41,602 | INFO     | current chi2=1.005378740063134 (change=62.538187036155335 %)
[2026-03-05 04:05:30] 2026-03-05 03:04:41,603 | INFO     | sum of square deviations: 2263977332.5
[2026-03-05 04:05:30] 2026-03-05 03:04:41,604 | INFO     | sum of deviations: -49529618499.0
[2026-03-05 04:05:30] 2026-03-05 03:04:41,604 | INFO     | mean x: 1772673925.5
[2026-03-05 04:05:30] 2026-03-05 03:04:41,604 | INFO     | mean y: 2544140.4845360825
[2026-03-05 04:05:30] 2026-03-05 03:04:41,605 | INFO     | intersect: 38783790751.371155
[2026-03-05 04:05:30] 2026-03-05 03:04:41,605 | INFO     | chi2: 0.9633160842859592
[2026-03-05 04:05:30] 2026-03-05 03:04:41,605 | INFO     | current chi2=0.9633160842859592 (change=4.183762208313004 %)
[2026-03-05 04:05:30] 2026-03-05 03:04:41,605 | INFO     | left removable region: 30
[2026-03-05 04:05:30] 2026-03-05 03:04:41,606 | INFO     | sum of square deviations: 1605470102.0
[2026-03-05 04:05:30] 2026-03-05 03:04:41,607 | INFO     | sum of deviations: -15832453986.0
[2026-03-05 04:05:30] 2026-03-05 03:04:41,607 | INFO     | mean x: 1772674200.0
[2026-03-05 04:05:30] 2026-03-05 03:04:41,607 | INFO     | mean y: 2537119.3121387283
[2026-03-05 04:05:30] 2026-03-05 03:04:41,607 | INFO     | intersect: 17483885833.752018
[2026-03-05 04:05:30] 2026-03-05 03:04:41,608 | INFO     | chi2: 0.11576039047483042
[2026-03-05 04:05:30] 2026-03-05 03:04:41,608 | INFO     | current memory leak: -9.86 B/s (using 173 data points, chi2=0.12)
[2026-03-05 04:05:30] 2026-03-05 03:04:41,608 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2026-03-05 04:05:30] 2026-03-05 03:04:41,609 | INFO     | ..............................
[2026-03-05 04:05:30] 2026-03-05 03:04:41,609 | INFO     | . Timing measurements:
[2026-03-05 04:05:30] 2026-03-05 03:04:41,609 | INFO     | . get job = 0 s
[2026-03-05 04:05:30] 2026-03-05 03:04:41,609 | INFO     | . initial setup = 113 s
[2026-03-05 04:05:30] 2026-03-05 03:04:41,609 | INFO     | . payload setup = 156 s
[2026-03-05 04:05:30] 2026-03-05 03:04:41,609 | INFO     | . stage-in = 0 s
[2026-03-05 04:05:30] 2026-03-05 03:04:41,609 | INFO     | . payload execution = 12875 s
[2026-03-05 04:05:30] 2026-03-05 03:04:41,609 | INFO     | . stage-out = 9 s
[2026-03-05 04:05:30] 2026-03-05 03:04:41,609 | INFO     | . log creation = 1 s
[2026-03-05 04:05:30] 2026-03-05 03:04:41,610 | INFO     | ..............................
[2026-03-05 04:05:30] 2026-03-05 03:04:41,763 | INFO     | time since job start (13063s) is within the limit (349056.0s)
[2026-03-05 04:05:30] 2026-03-05 03:04:41,788 | INFO     | 
[2026-03-05 04:05:30] 2026-03-05 03:04:41,788 | INFO     | job summary report
[2026-03-05 04:05:30] 2026-03-05 03:04:41,788 | INFO     | --------------------------------------------------
[2026-03-05 04:05:30] 2026-03-05 03:04:41,789 | INFO     | PanDA job id: 7038985245
[2026-03-05 04:05:30] 2026-03-05 03:04:41,789 | INFO     | task id: 48868979
[2026-03-05 04:05:30] 2026-03-05 03:04:41,789 | INFO     | errors: (none)
[2026-03-05 04:05:30] 2026-03-05 03:04:41,789 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-05 04:05:30] 2026-03-05 03:04:41,789 | INFO     | pilot state: finished 
[2026-03-05 04:05:30] 2026-03-05 03:04:41,789 | INFO     | transexitcode: 0
[2026-03-05 04:05:30] 2026-03-05 03:04:41,789 | INFO     | exeerrorcode: 0
[2026-03-05 04:05:30] 2026-03-05 03:04:41,789 | INFO     | exeerrordiag: 
[2026-03-05 04:05:30] 2026-03-05 03:04:41,789 | INFO     | exitcode: 0
[2026-03-05 04:05:30] 2026-03-05 03:04:41,790 | INFO     | exitmsg: OK
[2026-03-05 04:05:30] 2026-03-05 03:04:41,790 | INFO     | cpuconsumptiontime: 60059 s
[2026-03-05 04:05:30] 2026-03-05 03:04:41,790 | INFO     | nevents: 400
[2026-03-05 04:05:30] 2026-03-05 03:04:41,790 | INFO     | neventsw: 0
[2026-03-05 04:05:30] 2026-03-05 03:04:41,790 | INFO     | pid: 25350
[2026-03-05 04:05:30] 2026-03-05 03:04:41,790 | INFO     | pgrp: 25350
[2026-03-05 04:05:30] 2026-03-05 03:04:41,790 | INFO     | corecount: 8
[2026-03-05 04:05:30] 2026-03-05 03:04:41,790 | INFO     | event service: False
[2026-03-05 04:05:30] 2026-03-05 03:04:41,790 | INFO     | sizes: {0: 2294653, 1: 2295338, 2: 2295799, 13: 2295799, 13035: 2325857, 13046: 2334855, 13049: 2335039, 13050: 2335233}
[2026-03-05 04:05:30] 2026-03-05 03:04:41,796 | INFO     | --------------------------------------------------
[2026-03-05 04:05:30] 2026-03-05 03:04:41,796 | INFO     | 
[2026-03-05 04:05:30] 2026-03-05 03:04:41,796 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-03-05 04:05:30] 2026-03-05 03:04:42,292 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-05 04:05:30] 2026-03-05 03:04:42,293 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-05 04:05:30] 2026-03-05 03:04:42,293 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-05 04:05:30] 2026-03-05 03:04:42,293 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-05 04:05:30] 2026-03-05 03:04:42,293 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-05 04:05:30] 2026-03-05 03:04:42,293 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-05 04:05:30] 2026-03-05 03:04:42,293 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-05 04:05:30] 2026-03-05 03:04:42,293 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-05 04:05:30] 2026-03-05 03:04:42,293 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-05 04:05:30] 2026-03-05 03:04:42,294 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-05 04:05:30] 2026-03-05 03:04:42,294 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-05 04:05:30] 2026-03-05 03:04:42,294 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-05 04:05:30] 2026-03-05 03:04:42,294 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-05 04:05:30] 2026-03-05 03:04:42,294 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-05 04:05:30] 2026-03-05 03:04:42,294 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-05 04:05:30] 2026-03-05 03:04:42,294 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-05 04:05:30] 2026-03-05 03:04:42,295 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-05 04:05:30] 2026-03-05 03:04:42,295 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-05 04:05:30] 2026-03-05 03:04:42,295 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-05 04:05:30] 2026-03-05 03:04:42,295 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-05 04:05:30] 2026-03-05 03:04:42,295 | INFO     | job 7038985245 has completed (purged errors)
[2026-03-05 04:05:30] 2026-03-05 03:04:42,295 | INFO     | overall cleanup function is called
[2026-03-05 04:05:30] 2026-03-05 03:04:43,304 | INFO     | --- collectZombieJob: --- 10, [25350]
[2026-03-05 04:05:30] 2026-03-05 03:04:43,304 | INFO     | zombie collector waiting for pid 25350
[2026-03-05 04:05:30] 2026-03-05 03:04:43,304 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 04:05:30] 2026-03-05 03:04:43,304 | INFO     | collected zombie processes
[2026-03-05 04:05:30] 2026-03-05 03:04:43,304 | INFO     | will attempt to kill all subprocesses of pid=25350
[2026-03-05 04:05:30] 2026-03-05 03:04:43,396 | INFO     | process IDs to be killed: [25350] (in reverse order)
[2026-03-05 04:05:30] 2026-03-05 03:04:44,172 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 04:05:30] 2026-03-05 03:04:44,173 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 04:05:30] 2026-03-05 03:04:44,175 | INFO     | did not find any defunct processes belonging to 25350
[2026-03-05 04:05:30] 2026-03-05 03:04:44,177 | INFO     | did not find any defunct processes belonging to 25350
[2026-03-05 04:05:30] 2026-03-05 03:04:44,177 | INFO     | ready for new job
[2026-03-05 04:05:30] 2026-03-05 03:04:44,178 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 04:05:30] 2026-03-05 03:04:44,180 | INFO     | **************************************
[2026-03-05 04:05:30] 2026-03-05 03:04:44,180 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 04:05:30] 2026-03-05 03:04:44,180 | INFO     | **************************************
[2026-03-05 04:05:30] 2026-03-05 03:04:44,180 | INFO     | 
[2026-03-05 04:05:30] 2026-03-05 03:04:44,181 | INFO     | pilot is running in a VM
[2026-03-05 04:05:30] 2026-03-05 03:04:44,181 | INFO     | architecture information:
[2026-03-05 04:05:30] 2026-03-05 03:04:44,187 | INFO     | executing command: cat /etc/os-release
[2026-03-05 04:05:30] 2026-03-05 03:04:44,491 | INFO     | cat /etc/os-release:
[2026-03-05 04:05:30] NAME="CentOS Linux"
[2026-03-05 04:05:30] VERSION="7 (Core)"
[2026-03-05 04:05:30] ID="centos"
[2026-03-05 04:05:30] ID_LIKE="rhel fedora"
[2026-03-05 04:05:30] VERSION_ID="7"
[2026-03-05 04:05:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 04:05:30] ANSI_COLOR="0;31"
[2026-03-05 04:05:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 04:05:30] HOME_URL="https://www.centos.org/"
[2026-03-05 04:05:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 04:05:30] 
[2026-03-05 04:05:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 04:05:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 04:05:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 04:05:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 04:05:30] 
[2026-03-05 04:05:30] 2026-03-05 03:04:44,491 | INFO     | **************************************
[2026-03-05 04:05:30] 2026-03-05 03:04:44,995 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-03-05 04:05:30] 2026-03-05 03:04:45,176 | INFO     | sufficient remaining disk space (496731422720 B)
[2026-03-05 04:05:30] 2026-03-05 03:04:45,176 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 04:05:30] 2026-03-05 03:04:45,176 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 04:05:30] 2026-03-05 03:04:45,176 | INFO     | update_server=False
[2026-03-05 04:05:30] 2026-03-05 03:04:45,176 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 04:05:30] 2026-03-05 03:04:45,178 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 04:05:30] 2026-03-05 03:04:45,345 | INFO     | all data control threads have been joined
[2026-03-05 04:05:30] 2026-03-05 03:04:45,367 | INFO     | all job control threads have been joined
[2026-03-05 04:05:30] 2026-03-05 03:04:45,664 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-05 04:05:30] 2026-03-05 03:04:45,664 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-05 04:05:30] 2026-03-05 03:04:45,664 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 04:05:30] 2026-03-05 03:04:45,664 | INFO     | will abort loop
[2026-03-05 04:05:30] 2026-03-05 03:04:46,160 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 04:05:30] 2026-03-05 03:04:46,183 | INFO     | [job] retrieve thread has finished
[2026-03-05 04:05:30] 2026-03-05 03:04:46,323 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 04:05:30] 2026-03-05 03:04:46,351 | INFO     | [data] control thread has finished
[2026-03-05 04:05:30] 2026-03-05 03:04:46,363 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 04:05:30] 2026-03-05 03:04:46,373 | INFO     | [job] control thread has finished
[2026-03-05 04:05:30] 2026-03-05 03:04:46,586 | INFO     | all payload control threads have been joined
[2026-03-05 04:05:30] 2026-03-05 03:04:46,642 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 04:05:30] 2026-03-05 03:04:46,670 | INFO     | [job] job monitor thread has finished
[2026-03-05 04:05:30] 2026-03-05 03:04:46,803 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 04:05:30] 2026-03-05 03:04:46,819 | INFO     | [job] validate thread has finished
[2026-03-05 04:05:30] 2026-03-05 03:04:47,026 | INFO     | [data] copytool_in thread has finished
[2026-03-05 04:05:30] 2026-03-05 03:04:47,056 | INFO     | [payload] validate_post thread has finished
[2026-03-05 04:05:30] 2026-03-05 03:04:47,185 | INFO     | [data] copytool_out thread has finished
[2026-03-05 04:05:30] 2026-03-05 03:04:47,221 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 04:05:30] 2026-03-05 03:04:47,454 | INFO     | [payload] failed_post thread has finished
[2026-03-05 04:05:30] 2026-03-05 03:04:47,592 | INFO     | [payload] control thread has finished
[2026-03-05 04:05:30] 2026-03-05 03:04:47,809 | INFO     | [job] queue monitor thread has finished
[2026-03-05 04:05:30] 2026-03-05 03:04:50,169 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 04:05:30] 2026-03-05 03:05:14,921 | INFO     | PID=20865 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-05 04:05:30] 2026-03-05 03:05:14,921 | INFO     | .. there are 2 such processes running
[2026-03-05 04:05:30] 2026-03-05 03:05:14,922 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 04:05:30] 2026-03-05 03:05:14,923 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 04:05:30] 2026-03-05 03:05:14,923 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 04:05:30] 2026-03-05 03:05:19,855 | INFO     | [monitor] cgroup control has ended
[2026-03-05 04:05:30] 2026-03-05 03:05:21,542 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140303769786176)>', '<ExcThread(monitor, started 140303335933696)>']
[2026-03-05 04:05:30] 2026-03-05 03:05:21,965 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 04:05:30] 2026-03-05 03:05:21,965 | INFO     | [monitor] control thread has ended
[2026-03-05 04:05:30] 2026-03-05 03:05:26,568 | INFO     | all workflow threads have been joined
[2026-03-05 04:05:30] 2026-03-05 03:05:26,568 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 04:05:30] 2026-03-05 03:05:26,568 | INFO     | traces error code: 0
[2026-03-05 04:05:30] 2026-03-05 03:05:26,569 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 04:05:30] 2026-03-05 03:05:26,707 [wrapper] ==== pilot stdout END ====
[2026-03-05 04:05:30] 2026-03-05 03:05:26,714 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 04:05:30] 2026-03-05 03:05:26,717 [wrapper] pilotpid: 20865
[2026-03-05 04:05:30] 2026-03-05 03:05:26,720 [wrapper] Pilot exit status: 0
[2026-03-05 04:05:30] 2026-03-05 03:05:26,738 [wrapper] pandaids: 7038985245
[2026-03-05 04:05:30] 2026-03-05 03:05:26,769 [wrapper] cleanup supervisor_pilot 15348 20866
[2026-03-05 04:05:30] 2026-03-05 03:05:26,895 [wrapper] Test setup, not cleaning
[2026-03-05 04:05:30] 2026-03-05 03:05:26,997 [wrapper] apfmon messages muted
[2026-03-05 04:05:30] 2026-03-05 03:05:27,102 [wrapper] ==== wrapper stdout END ====
[2026-03-05 04:05:30] 2026-03-05 03:05:27,237 [wrapper] ==== wrapper stderr END ====
[2026-03-05 04:05:30]  *** Error codes and diagnostics ***
[2026-03-05 04:05:30]     "exeErrorCode": 0,
[2026-03-05 04:05:30]     "exeErrorDiag": "",
[2026-03-05 04:05:30]     "pilotErrorCode": 0,
[2026-03-05 04:05:30]     "pilotErrorDiag": "",
[2026-03-05 04:05:30]  *** Listing of results directory ***
[2026-03-05 04:05:30] total 499076
[2026-03-05 04:05:30] -rw-r--r--. 1 boinc boinc    584627 Mar  4 11:35 pilot3.tar.gz
[2026-03-05 04:05:30] -rw-r--r--. 1 boinc boinc      5111 Mar  4 11:36 queuedata.json
[2026-03-05 04:05:30] -rwx------. 1 boinc boinc     36322 Mar  4 11:37 runpilot2-wrapper.sh
[2026-03-05 04:05:30] -rw-r--r--. 1 boinc boinc       100 Mar  5 00:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 04:05:30] -rwxr-xr-x. 1 boinc boinc      7986 Mar  5 00:20 run_atlas
[2026-03-05 04:05:30] -rw-r--r--. 1 boinc boinc       105 Mar  5 00:20 job.xml
[2026-03-05 04:05:30] -rw-r--r--. 2 boinc boinc 293654025 Mar  5 00:20 EVNT.48717036._000019.pool.root.1
[2026-03-05 04:05:30] drwxrwx--x. 2 boinc boinc        68 Mar  5 00:20 shared
[2026-03-05 04:05:30] -rw-r--r--. 2 boinc boinc    597970 Mar  5 00:20 input.tar.gz
[2026-03-05 04:05:30] -rw-r--r--. 1 boinc boinc      6390 Mar  5 00:20 init_data.xml
[2026-03-05 04:05:30] -rw-r--r--. 2 boinc boinc     15845 Mar  5 00:20 start_atlas.sh
[2026-03-05 04:05:30] -rw-r--r--. 1 boinc boinc         0 Mar  5 00:20 boinc_lockfile
[2026-03-05 04:05:30] -rw-r--r--. 1 boinc boinc      2594 Mar  5 00:20 pandaJob.out
[2026-03-05 04:05:30] -rw-------. 1 boinc boinc       415 Mar  5 00:26 workernode_map.json
[2026-03-05 04:05:30] -rw-------. 1 boinc boinc    997765 Mar  5 00:26 agis_schedconf.cvmfs.json
[2026-03-05 04:05:30] drwx------. 5 boinc boinc      4096 Mar  5 00:26 pilot3
[2026-03-05 04:05:30] -rw-------. 1 boinc boinc 208884824 Mar  5 04:03 HITS.48868979._001558.pool.root.1
[2026-03-05 04:05:30] -rw-r--r--. 1 boinc boinc       530 Mar  5 04:03 boinc_task_state.xml
[2026-03-05 04:05:30] -rw-------. 1 boinc boinc      1020 Mar  5 04:04 memory_monitor_summary.json
[2026-03-05 04:05:30] -rw-------. 1 boinc boinc   1521291 Mar  5 04:04 agis_ddmendpoints.agis.ALL.json
[2026-03-05 04:05:30] -rw-------. 1 boinc boinc    447368 Mar  5 04:04 log.48868979._001558.job.log.tgz.1
[2026-03-05 04:05:30] -rw-------. 1 boinc boinc      6319 Mar  5 04:04 heartbeat.json
[2026-03-05 04:05:30] -rw-r--r--. 1 boinc boinc      8192 Mar  5 04:05 boinc_mmap_file
[2026-03-05 04:05:30] -rw-r--r--. 1 boinc boinc        28 Mar  5 04:05 wrapper_checkpoint.txt
[2026-03-05 04:05:30] -rw-------. 1 boinc boinc        95 Mar  5 04:05 pilot_heartbeat.json
[2026-03-05 04:05:30] -rw-------. 1 boinc boinc      5066 Mar  5 04:05 pilotlog.txt
[2026-03-05 04:05:30] -rw-------. 1 boinc boinc   1847751 Mar  5 04:05 log.48868979._001558.job.log.1
[2026-03-05 04:05:30] -rw-------. 1 boinc boinc       357 Mar  5 04:05 output.list
[2026-03-05 04:05:30] -rw-r--r--. 1 boinc boinc       620 Mar  5 04:05 runtime_log
[2026-03-05 04:05:30] -rw-------. 1 boinc boinc   2314240 Mar  5 04:05 result.tar.gz
[2026-03-05 04:05:30] -rw-r--r--. 1 boinc boinc      8816 Mar  5 04:05 runtime_log.err
[2026-03-05 04:05:30] -rw-------. 1 boinc boinc       654 Mar  5 04:05 ptBLDmfmyH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmCCILDmv1LrAn.diag
[2026-03-05 04:05:30] -rw-r--r--. 1 boinc boinc     20732 Mar  5 04:05 stderr.txt
[2026-03-05 04:05:30] HITS file was successfully produced:
[2026-03-05 04:05:30] -rw-------. 1 boinc boinc 208884824 Mar  5 04:03 shared/HITS.pool.root.1
[2026-03-05 04:05:30]  *** Contents of shared directory: ***
[2026-03-05 04:05:30] total 493624
[2026-03-05 04:05:30] -rw-r--r--. 2 boinc boinc 293654025 Mar  5 00:20 ATLAS.root_0
[2026-03-05 04:05:30] -rw-r--r--. 2 boinc boinc    597970 Mar  5 00:20 input.tar.gz
[2026-03-05 04:05:30] -rw-r--r--. 2 boinc boinc     15845 Mar  5 00:20 start_atlas.sh
[2026-03-05 04:05:30] -rw-------. 1 boinc boinc 208884824 Mar  5 04:03 HITS.pool.root.1
[2026-03-05 04:05:30] -rw-------. 1 boinc boinc   2314240 Mar  5 04:05 result.tar.gz
04:05:32 (16871): run_atlas exited; CPU time 60199.947711
04:05:32 (16871): called boinc_finish(0)

</stderr_txt>
]]>

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