Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:59:51 (29636): wrapper (7.7.26015): starting
00:59:51 (29636): wrapper: running run_atlas (--nthreads 8)
[2026-03-05 00:59:51] Arguments: --nthreads 8
[2026-03-05 00:59:51] Threads: 8
[2026-03-05 00:59:51] Checking for CVMFS
[2026-03-05 00:59:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-05 00:59:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-05 00:59:52] Running cvmfs_config stat atlas.cern.ch
[2026-03-05 00:59:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-05 00:59:54] 2.11.2.0 24946 113867 104440 156896 1 54 21015465 25165824 899 130560 156 34950192 99.792 29016322 1026 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-05 00:59:54] CVMFS is ok
[2026-03-05 00:59:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 00:59:54] Checking for apptainer binary...
[2026-03-05 00:59:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-05 00:59:54] Running /usr/bin/apptainer --version
[2026-03-05 00:59:54] apptainer version 1.3.2-1.el7
[2026-03-05 00:59:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 01:00:14] cg-vwn407.simple-grid.lan
[2026-03-05 01:00:14] apptainer works
[2026-03-05 01:00:15] Set ATHENA_PROC_NUMBER=8
[2026-03-05 01:00:15] Set ATHENA_CORE_NUMBER=8
[2026-03-05 01:00:15] Starting ATLAS job with PandaID=7038874230
[2026-03-05 01:00:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 04:29:24]  *** The last 200 lines of the pilot log: ***
[2026-03-05 04:29:24] 2026-03-05 03:28:24,049 | INFO     | log transfer has been attempted: DONE
[2026-03-05 04:29:24] 2026-03-05 03:28:24,049 | INFO     | job 7038874230 has finished - writing final server update
[2026-03-05 04:29:24] 2026-03-05 03:28:24,049 | INFO     | total number of processed events: 400 (read)
[2026-03-05 04:29:24] 2026-03-05 03:28:24,052 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-7038874230/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 04:29:24] 2026-03-05 03:28:24,052 | INFO     | extracted standard info from prmon json
[2026-03-05 04:29:24] 2026-03-05 03:28:24,053 | INFO     | extracted standard memory fields from prmon json
[2026-03-05 04:29:24] 2026-03-05 03:28:24,053 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-05 04:29:24] 2026-03-05 03:28:24,053 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-05 04:29:24] 2026-03-05 03:28:24,053 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-05 04:29:24] 2026-03-05 03:28:24,058 | INFO     | fitting pss+swap vs Time
[2026-03-05 04:29:24] 2026-03-05 03:28:24,058 | INFO     | sum of square deviations: 2263977332.5
[2026-03-05 04:29:24] 2026-03-05 03:28:24,060 | INFO     | sum of deviations: 59157523243.00003
[2026-03-05 04:29:24] 2026-03-05 03:28:24,060 | INFO     | mean x: 1772675400.5
[2026-03-05 04:29:24] 2026-03-05 03:28:24,060 | INFO     | mean y: 2396319.3608247424
[2026-03-05 04:29:24] 2026-03-05 03:28:24,060 | INFO     | intersect: -46317451808.9654
[2026-03-05 04:29:24] 2026-03-05 03:28:24,061 | INFO     | chi2: 9.38855432003249
[2026-03-05 04:29:24] 2026-03-05 03:28:24,061 | INFO     | sum of square deviations: 2093397390.0
[2026-03-05 04:29:24] 2026-03-05 03:28:24,063 | INFO     | sum of deviations: 83777854999.0
[2026-03-05 04:29:24] 2026-03-05 03:28:24,063 | INFO     | mean x: 1772675248.0
[2026-03-05 04:29:24] 2026-03-05 03:28:24,063 | INFO     | mean y: 2417968.3333333335
[2026-03-05 04:29:24] 2026-03-05 03:28:24,063 | INFO     | intersect: -70940122896.906
[2026-03-05 04:29:24] 2026-03-05 03:28:24,063 | INFO     | chi2: 7.8922972083277605
[2026-03-05 04:29:24] 2026-03-05 03:28:24,064 | INFO     | current chi2=7.8922972083277605 (change=15.937034187597392 %)
[2026-03-05 04:29:24] 2026-03-05 03:28:24,064 | INFO     | right removable region: 188
[2026-03-05 04:29:24] 2026-03-05 03:28:24,064 | INFO     | sum of square deviations: 2093397390.0
[2026-03-05 04:29:24] 2026-03-05 03:28:24,066 | INFO     | sum of deviations: -4898134141.000002
[2026-03-05 04:29:24] 2026-03-05 03:28:24,066 | INFO     | mean x: 1772675553.0
[2026-03-05 04:29:24] 2026-03-05 03:28:24,074 | INFO     | mean y: 2453528.074074074
[2026-03-05 04:29:24] 2026-03-05 03:28:24,074 | INFO     | intersect: 4150162266.2918854
[2026-03-05 04:29:24] 2026-03-05 03:28:24,075 | INFO     | chi2: 4.570538229337991
[2026-03-05 04:29:24] 2026-03-05 03:28:24,075 | INFO     | current chi2=4.570538229337991 (change=51.31797640467639 %)
[2026-03-05 04:29:24] 2026-03-05 03:28:24,075 | INFO     | sum of square deviations: 1931608310.0
[2026-03-05 04:29:24] 2026-03-05 03:28:24,077 | INFO     | sum of deviations: -53497865315.5
[2026-03-05 04:29:24] 2026-03-05 03:28:24,077 | INFO     | mean x: 1772675705.5
[2026-03-05 04:29:24] 2026-03-05 03:28:24,077 | INFO     | mean y: 2499212.8315217393
[2026-03-05 04:29:24] 2026-03-05 03:28:24,077 | INFO     | intersect: 49098563694.40229
[2026-03-05 04:29:24] 2026-03-05 03:28:24,078 | INFO     | chi2: 1.9464312452040793
[2026-03-05 04:29:24] 2026-03-05 03:28:24,078 | INFO     | current chi2=1.9464312452040793 (change=57.4135222694329 %)
[2026-03-05 04:29:24] 2026-03-05 03:28:24,078 | INFO     | sum of square deviations: 1778377530.0
[2026-03-05 04:29:24] 2026-03-05 03:28:24,080 | INFO     | sum of deviations: -60266647995.99999
[2026-03-05 04:29:24] 2026-03-05 03:28:24,080 | INFO     | mean x: 1772675858.0
[2026-03-05 04:29:24] 2026-03-05 03:28:24,080 | INFO     | mean y: 2505850.4525139667
[2026-03-05 04:29:24] 2026-03-05 03:28:24,080 | INFO     | intersect: 60075932410.83717
[2026-03-05 04:29:24] 2026-03-05 03:28:24,080 | INFO     | chi2: 1.8138148071673181
[2026-03-05 04:29:24] 2026-03-05 03:28:24,080 | INFO     | current chi2=1.8138148071673181 (change=6.8133122278797265 %)
[2026-03-05 04:29:24] 2026-03-05 03:28:24,081 | INFO     | left removable region: 30
[2026-03-05 04:29:24] 2026-03-05 03:28:24,081 | INFO     | sum of square deviations: 1223016419.5
[2026-03-05 04:29:24] 2026-03-05 03:28:24,082 | INFO     | sum of deviations: -24075264304.0
[2026-03-05 04:29:24] 2026-03-05 03:28:24,082 | INFO     | mean x: 1772676132.5
[2026-03-05 04:29:24] 2026-03-05 03:28:24,082 | INFO     | mean y: 2520499.3164556962
[2026-03-05 04:29:24] 2026-03-05 03:28:24,082 | INFO     | intersect: 34897919886.33182
[2026-03-05 04:29:24] 2026-03-05 03:28:24,083 | INFO     | chi2: 0.09012838545322864
[2026-03-05 04:29:24] 2026-03-05 03:28:24,083 | INFO     | current memory leak: -19.69 B/s (using 158 data points, chi2=0.09)
[2026-03-05 04:29:24] 2026-03-05 03:28:24,084 | INFO     | could have reported an average CPU frequency of 1999 MHz (10 samples)
[2026-03-05 04:29:24] 2026-03-05 03:28:24,084 | INFO     | ..............................
[2026-03-05 04:29:24] 2026-03-05 03:28:24,084 | INFO     | . Timing measurements:
[2026-03-05 04:29:24] 2026-03-05 03:28:24,084 | INFO     | . get job = 0 s
[2026-03-05 04:29:24] 2026-03-05 03:28:24,084 | INFO     | . initial setup = 128 s
[2026-03-05 04:29:24] 2026-03-05 03:28:24,084 | INFO     | . payload setup = 156 s
[2026-03-05 04:29:24] 2026-03-05 03:28:24,084 | INFO     | . stage-in = 0 s
[2026-03-05 04:29:24] 2026-03-05 03:28:24,084 | INFO     | . payload execution = 11909 s
[2026-03-05 04:29:24] 2026-03-05 03:28:24,085 | INFO     | . stage-out = 3 s
[2026-03-05 04:29:24] 2026-03-05 03:28:24,085 | INFO     | . log creation = 1 s
[2026-03-05 04:29:24] 2026-03-05 03:28:24,085 | INFO     | ..............................
[2026-03-05 04:29:24] 2026-03-05 03:28:24,217 | INFO     | 
[2026-03-05 04:29:24] 2026-03-05 03:28:24,217 | INFO     | job summary report
[2026-03-05 04:29:24] 2026-03-05 03:28:24,217 | INFO     | --------------------------------------------------
[2026-03-05 04:29:24] 2026-03-05 03:28:24,218 | INFO     | PanDA job id: 7038874230
[2026-03-05 04:29:24] 2026-03-05 03:28:24,218 | INFO     | task id: 48700890
[2026-03-05 04:29:24] 2026-03-05 03:28:24,218 | INFO     | errors: (none)
[2026-03-05 04:29:24] 2026-03-05 03:28:24,218 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-05 04:29:24] 2026-03-05 03:28:24,218 | INFO     | pilot state: finished 
[2026-03-05 04:29:24] 2026-03-05 03:28:24,218 | INFO     | transexitcode: 0
[2026-03-05 04:29:24] 2026-03-05 03:28:24,218 | INFO     | exeerrorcode: 0
[2026-03-05 04:29:24] 2026-03-05 03:28:24,218 | INFO     | exeerrordiag: 
[2026-03-05 04:29:24] 2026-03-05 03:28:24,219 | INFO     | exitcode: 0
[2026-03-05 04:29:24] 2026-03-05 03:28:24,219 | INFO     | exitmsg: OK
[2026-03-05 04:29:24] 2026-03-05 03:28:24,219 | INFO     | cpuconsumptiontime: 44117 s
[2026-03-05 04:29:24] 2026-03-05 03:28:24,219 | INFO     | nevents: 400
[2026-03-05 04:29:24] 2026-03-05 03:28:24,219 | INFO     | neventsw: 0
[2026-03-05 04:29:24] 2026-03-05 03:28:24,219 | INFO     | pid: 5650
[2026-03-05 04:29:24] 2026-03-05 03:28:24,219 | INFO     | pgrp: 5650
[2026-03-05 04:29:24] 2026-03-05 03:28:24,219 | INFO     | corecount: 8
[2026-03-05 04:29:24] 2026-03-05 03:28:24,219 | INFO     | event service: False
[2026-03-05 04:29:24] 2026-03-05 03:28:24,220 | INFO     | sizes: {0: 2294602, 1: 2295287, 2: 2295748, 3: 2295748, 13: 2295776, 12071: 2325395, 12075: 2334393, 12077: 2334449, 12078: 2334643}
[2026-03-05 04:29:24] 2026-03-05 03:28:24,220 | INFO     | --------------------------------------------------
[2026-03-05 04:29:24] 2026-03-05 03:28:24,220 | INFO     | 
[2026-03-05 04:29:24] 2026-03-05 03:28:24,220 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-03-05 04:29:24] 2026-03-05 03:28:24,513 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-05 04:29:24] 2026-03-05 03:28:24,514 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-05 04:29:24] 2026-03-05 03:28:24,514 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-05 04:29:24] 2026-03-05 03:28:24,514 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-05 04:29:24] 2026-03-05 03:28:24,514 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-05 04:29:24] 2026-03-05 03:28:24,514 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-05 04:29:24] 2026-03-05 03:28:24,515 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-05 04:29:24] 2026-03-05 03:28:24,515 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-05 04:29:24] 2026-03-05 03:28:24,515 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-05 04:29:24] 2026-03-05 03:28:24,515 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-05 04:29:24] 2026-03-05 03:28:24,515 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-05 04:29:24] 2026-03-05 03:28:24,515 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-05 04:29:24] 2026-03-05 03:28:24,515 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-05 04:29:24] 2026-03-05 03:28:24,515 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-05 04:29:24] 2026-03-05 03:28:24,516 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-05 04:29:24] 2026-03-05 03:28:24,516 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-05 04:29:24] 2026-03-05 03:28:24,516 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-05 04:29:24] 2026-03-05 03:28:24,528 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-05 04:29:24] 2026-03-05 03:28:24,528 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-05 04:29:24] 2026-03-05 03:28:24,528 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-05 04:29:24] 2026-03-05 03:28:24,529 | INFO     | job 7038874230 has completed (purged errors)
[2026-03-05 04:29:24] 2026-03-05 03:28:24,529 | INFO     | overall cleanup function is called
[2026-03-05 04:29:24] 2026-03-05 03:28:25,538 | INFO     | --- collectZombieJob: --- 10, [5650]
[2026-03-05 04:29:24] 2026-03-05 03:28:25,538 | INFO     | zombie collector waiting for pid 5650
[2026-03-05 04:29:24] 2026-03-05 03:28:25,538 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 04:29:24] 2026-03-05 03:28:25,539 | INFO     | collected zombie processes
[2026-03-05 04:29:24] 2026-03-05 03:28:25,539 | INFO     | will attempt to kill all subprocesses of pid=5650
[2026-03-05 04:29:24] 2026-03-05 03:28:25,639 | INFO     | process IDs to be killed: [5650] (in reverse order)
[2026-03-05 04:29:24] 2026-03-05 03:28:26,644 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 04:29:24] 2026-03-05 03:28:26,645 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 04:29:24] 2026-03-05 03:28:26,647 | INFO     | did not find any defunct processes belonging to 5650
[2026-03-05 04:29:24] 2026-03-05 03:28:26,648 | INFO     | did not find any defunct processes belonging to 5650
[2026-03-05 04:29:24] 2026-03-05 03:28:26,649 | INFO     | ready for new job
[2026-03-05 04:29:24] 2026-03-05 03:28:26,649 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 04:29:24] 2026-03-05 03:28:26,651 | INFO     | **************************************
[2026-03-05 04:29:24] 2026-03-05 03:28:26,651 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 04:29:24] 2026-03-05 03:28:26,651 | INFO     | **************************************
[2026-03-05 04:29:24] 2026-03-05 03:28:26,651 | INFO     | 
[2026-03-05 04:29:24] 2026-03-05 03:28:26,652 | INFO     | pilot is running in a VM
[2026-03-05 04:29:24] 2026-03-05 03:28:26,652 | INFO     | architecture information:
[2026-03-05 04:29:24] 2026-03-05 03:28:26,663 | INFO     | executing command: cat /etc/os-release
[2026-03-05 04:29:24] 2026-03-05 03:28:27,000 | INFO     | cat /etc/os-release:
[2026-03-05 04:29:24] NAME="CentOS Linux"
[2026-03-05 04:29:24] VERSION="7 (Core)"
[2026-03-05 04:29:24] ID="centos"
[2026-03-05 04:29:24] ID_LIKE="rhel fedora"
[2026-03-05 04:29:24] VERSION_ID="7"
[2026-03-05 04:29:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 04:29:24] ANSI_COLOR="0;31"
[2026-03-05 04:29:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 04:29:24] HOME_URL="https://www.centos.org/"
[2026-03-05 04:29:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 04:29:24] 
[2026-03-05 04:29:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 04:29:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 04:29:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 04:29:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 04:29:24] 
[2026-03-05 04:29:24] 2026-03-05 03:28:27,001 | INFO     | **************************************
[2026-03-05 04:29:24] 2026-03-05 03:28:27,504 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-03-05 04:29:24] 2026-03-05 03:28:27,806 | INFO     | sufficient remaining disk space (496224960512 B)
[2026-03-05 04:29:24] 2026-03-05 03:28:27,806 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 04:29:24] 2026-03-05 03:28:27,806 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 04:29:24] 2026-03-05 03:28:27,806 | INFO     | update_server=False
[2026-03-05 04:29:24] 2026-03-05 03:28:27,806 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 04:29:24] 2026-03-05 03:28:28,043 | INFO     | all payload control threads have been joined
[2026-03-05 04:29:24] 2026-03-05 03:28:28,527 | INFO     | all data control threads have been joined
[2026-03-05 04:29:24] 2026-03-05 03:28:28,536 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 04:29:24] 2026-03-05 03:28:28,536 | INFO     | aborting loop
[2026-03-05 04:29:24] 2026-03-05 03:28:28,812 | INFO     | [job] retrieve thread has finished
[2026-03-05 04:29:24] 2026-03-05 03:28:28,858 | INFO     | [job] validate thread has finished
[2026-03-05 04:29:24] 2026-03-05 03:28:29,049 | INFO     | [payload] control thread has finished
[2026-03-05 04:29:24] 2026-03-05 03:28:29,216 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 04:29:24] 2026-03-05 03:28:29,230 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 04:29:24] 2026-03-05 03:28:29,240 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 04:29:24] 2026-03-05 03:28:29,284 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 04:29:24] 2026-03-05 03:28:29,383 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 04:29:24] 2026-03-05 03:28:29,492 | INFO     | all job control threads have been joined
[2026-03-05 04:29:24] 2026-03-05 03:28:29,533 | INFO     | [data] control thread has finished
[2026-03-05 04:29:24] 2026-03-05 03:28:29,542 | INFO     | [job] job monitor thread has finished
[2026-03-05 04:29:24] 2026-03-05 03:28:29,593 | INFO     | [data] copytool_in thread has finished
[2026-03-05 04:29:24] 2026-03-05 03:28:29,667 | INFO     | [payload] validate_post thread has finished
[2026-03-05 04:29:24] 2026-03-05 03:28:29,800 | INFO     | [payload] failed_post thread has finished
[2026-03-05 04:29:24] 2026-03-05 03:28:30,148 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 04:29:24] 2026-03-05 03:28:30,245 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 04:29:24] 2026-03-05 03:28:30,246 | INFO     | [job] queue monitor thread has finished
[2026-03-05 04:29:24] 2026-03-05 03:28:30,501 | INFO     | [job] control thread has finished
[2026-03-05 04:29:24] 2026-03-05 03:28:31,291 | INFO     | [data] copytool_out thread has finished
[2026-03-05 04:29:24] 2026-03-05 03:28:33,392 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 04:29:24] 2026-03-05 03:28:56,058 | INFO     | PID=1213 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-05 04:29:24] 2026-03-05 03:28:56,058 | INFO     | .. there are 2 such processes running
[2026-03-05 04:29:24] 2026-03-05 03:28:56,058 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 04:29:24] 2026-03-05 03:28:56,059 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 04:29:24] 2026-03-05 03:28:56,059 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 04:29:24] 2026-03-05 03:29:13,592 | INFO     | [monitor] cgroup control has ended
[2026-03-05 04:29:24] 2026-03-05 03:29:15,056 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139840967325504)>', '<ExcThread(monitor, started 139840309950208)>']
[2026-03-05 04:29:24] 2026-03-05 03:29:15,172 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 04:29:24] 2026-03-05 03:29:15,172 | INFO     | [monitor] control thread has ended
[2026-03-05 04:29:24] 2026-03-05 03:29:20,082 | INFO     | all workflow threads have been joined
[2026-03-05 04:29:24] 2026-03-05 03:29:20,082 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 04:29:24] 2026-03-05 03:29:20,083 | INFO     | traces error code: 0
[2026-03-05 04:29:24] 2026-03-05 03:29:20,083 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 04:29:24] 2026-03-05 03:29:20,517 [wrapper] ==== pilot stdout END ====
[2026-03-05 04:29:24] 2026-03-05 03:29:20,614 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 04:29:24] 2026-03-05 03:29:20,714 [wrapper] pilotpid: 1213
[2026-03-05 04:29:24] 2026-03-05 03:29:20,823 [wrapper] Pilot exit status: 0
[2026-03-05 04:29:24] 2026-03-05 03:29:21,258 [wrapper] pandaids: 7038874230
[2026-03-05 04:29:24] 2026-03-05 03:29:22,425 [wrapper] cleanup supervisor_pilot 11211 1214
[2026-03-05 04:29:24] 2026-03-05 03:29:22,557 [wrapper] Test setup, not cleaning
[2026-03-05 04:29:24] 2026-03-05 03:29:22,667 [wrapper] apfmon messages muted
[2026-03-05 04:29:24] 2026-03-05 03:29:22,777 [wrapper] ==== wrapper stdout END ====
[2026-03-05 04:29:24] 2026-03-05 03:29:22,882 [wrapper] ==== wrapper stderr END ====
[2026-03-05 04:29:24]  *** Error codes and diagnostics ***
[2026-03-05 04:29:24]     "exeErrorCode": 0,
[2026-03-05 04:29:24]     "exeErrorDiag": "",
[2026-03-05 04:29:24]     "pilotErrorCode": 0,
[2026-03-05 04:29:24]     "pilotErrorDiag": "",
[2026-03-05 04:29:24]  *** Listing of results directory ***
[2026-03-05 04:29:24] total 335356
[2026-03-05 04:29:24] -rw-r--r--. 1 boinc boinc    584627 Mar  4 11:35 pilot3.tar.gz
[2026-03-05 04:29:24] -rw-r--r--. 1 boinc boinc      5111 Mar  4 11:36 queuedata.json
[2026-03-05 04:29:24] -rwx------. 1 boinc boinc     36322 Mar  4 11:37 runpilot2-wrapper.sh
[2026-03-05 04:29:24] -rw-r--r--. 1 boinc boinc       100 Mar  5 00:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 04:29:24] -rwxr-xr-x. 1 boinc boinc      7986 Mar  5 00:59 run_atlas
[2026-03-05 04:29:24] -rw-r--r--. 1 boinc boinc       105 Mar  5 00:59 job.xml
[2026-03-05 04:29:24] -rw-r--r--. 2 boinc boinc 188128566 Mar  5 00:59 EVNT.48700888._000142.pool.root.1
[2026-03-05 04:29:24] -rw-r--r--. 2 boinc boinc     15845 Mar  5 00:59 start_atlas.sh
[2026-03-05 04:29:24] drwxrwx--x. 2 boinc boinc        68 Mar  5 00:59 shared
[2026-03-05 04:29:24] -rw-r--r--. 2 boinc boinc    597932 Mar  5 00:59 input.tar.gz
[2026-03-05 04:29:24] -rw-r--r--. 1 boinc boinc      6390 Mar  5 00:59 init_data.xml
[2026-03-05 04:29:24] -rw-r--r--. 1 boinc boinc         0 Mar  5 00:59 boinc_lockfile
[2026-03-05 04:29:24] -rw-r--r--. 1 boinc boinc      2512 Mar  5 01:00 pandaJob.out
[2026-03-05 04:29:24] -rw-------. 1 boinc boinc       415 Mar  5 01:06 workernode_map.json
[2026-03-05 04:29:24] -rw-------. 1 boinc boinc    997765 Mar  5 01:06 agis_schedconf.cvmfs.json
[2026-03-05 04:29:24] drwx------. 5 boinc boinc      4096 Mar  5 01:06 pilot3
[2026-03-05 04:29:24] -rw-------. 1 boinc boinc 147074193 Mar  5 04:26 HITS.48700890._003143.pool.root.1
[2026-03-05 04:29:24] -rw-r--r--. 1 boinc boinc       531 Mar  5 04:27 boinc_task_state.xml
[2026-03-05 04:29:24] -rw-------. 1 boinc boinc        95 Mar  5 04:27 pilot_heartbeat.json
[2026-03-05 04:29:24] -rw-------. 1 boinc boinc      1012 Mar  5 04:28 memory_monitor_summary.json
[2026-03-05 04:29:24] -rw-------. 1 boinc boinc   1521291 Mar  5 04:28 agis_ddmendpoints.agis.ALL.json
[2026-03-05 04:29:24] -rw-------. 1 boinc boinc    437754 Mar  5 04:28 log.48700890._003143.job.log.tgz.1
[2026-03-05 04:29:24] -rw-------. 1 boinc boinc      6324 Mar  5 04:28 heartbeat.json
[2026-03-05 04:29:24] -rw-------. 1 boinc boinc      4879 Mar  5 04:29 pilotlog.txt
[2026-03-05 04:29:24] -rw-r--r--. 1 boinc boinc        28 Mar  5 04:29 wrapper_checkpoint.txt
[2026-03-05 04:29:24] -rw-------. 1 boinc boinc   1701553 Mar  5 04:29 log.48700890._003143.job.log.1
[2026-03-05 04:29:24] -rw-------. 1 boinc boinc       357 Mar  5 04:29 output.list
[2026-03-05 04:29:24] -rw-r--r--. 1 boinc boinc       620 Mar  5 04:29 runtime_log
[2026-03-05 04:29:24] -rw-------. 1 boinc boinc   2160640 Mar  5 04:29 result.tar.gz
[2026-03-05 04:29:24] -rw-------. 1 boinc boinc       655 Mar  5 04:29 XmyLDmQmyH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmK8JLDmvRsKum.diag
[2026-03-05 04:29:24] -rw-r--r--. 1 boinc boinc      8816 Mar  5 04:29 runtime_log.err
[2026-03-05 04:29:24] -rw-r--r--. 1 boinc boinc      8192 Mar  5 04:29 boinc_mmap_file
[2026-03-05 04:29:24] -rw-r--r--. 1 boinc boinc     20704 Mar  5 04:29 stderr.txt
[2026-03-05 04:29:24] HITS file was successfully produced:
[2026-03-05 04:29:24] -rw-------. 1 boinc boinc 147074193 Mar  5 04:26 shared/HITS.pool.root.1
[2026-03-05 04:29:24]  *** Contents of shared directory: ***
[2026-03-05 04:29:24] total 330060
[2026-03-05 04:29:24] -rw-r--r--. 2 boinc boinc 188128566 Mar  5 00:59 ATLAS.root_0
[2026-03-05 04:29:24] -rw-r--r--. 2 boinc boinc     15845 Mar  5 00:59 start_atlas.sh
[2026-03-05 04:29:24] -rw-r--r--. 2 boinc boinc    597932 Mar  5 00:59 input.tar.gz
[2026-03-05 04:29:24] -rw-------. 1 boinc boinc 147074193 Mar  5 04:26 HITS.pool.root.1
[2026-03-05 04:29:24] -rw-------. 1 boinc boinc   2160640 Mar  5 04:29 result.tar.gz
04:29:26 (29636): run_atlas exited; CPU time 44247.940333
04:29:26 (29636): called boinc_finish(0)

</stderr_txt>
]]>

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