Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:55:45 (3975234): wrapper (7.7.26015): starting
18:55:45 (3975234): wrapper: running run_atlas (--nthreads 4)
[2026-03-07 18:55:45] Arguments: --nthreads 4
[2026-03-07 18:55:45] Threads: 4
[2026-03-07 18:55:45] Checking for CVMFS
[2026-03-07 18:55:45] No cvmfs_config command found, will try listing directly
[2026-03-07 18:55:45] CVMFS is ok
[2026-03-07 18:55:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 18:55:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-07 18:55:45] Further information can be found at the LHC@home message board.
[2026-03-07 18:55:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 18:55:45] Checking for apptainer binary...
[2026-03-07 18:55:45] which: no apptainer in ((null))
[2026-03-07 18:55:45] apptainer is not installed, using version from CVMFS
[2026-03-07 18:55:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 18:55:46] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot20/slots/2/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2026-03-07 18:55:46] apptainer works
[2026-03-07 18:55:46] Set ATHENA_PROC_NUMBER=4
[2026-03-07 18:55:46] Set ATHENA_CORE_NUMBER=4
[2026-03-07 18:55:46] Starting ATLAS job with PandaID=7038513242
[2026-03-07 18:55:46] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot20/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 21:36:10]  *** The last 200 lines of the pilot log: ***
[2026-03-07 21:36:10] 2026-03-07 20:35:10,455 | INFO     | preparing for final server update for job 7038513242 in state='finished'
[2026-03-07 21:36:10] 2026-03-07 20:35:10,455 | INFO     | reading metadata from: /var/lib/boinc/var/slot20/slots/2/PanDA_Pilot-7038513242/jobReport.json
[2026-03-07 21:36:10] 2026-03-07 20:35:10,457 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot20/slots/2/workernode_map.json
[2026-03-07 21:36:10] 2026-03-07 20:35:10,458 | INFO     | this job has now completed (state=finished)
[2026-03-07 21:36:10] 2026-03-07 20:35:10,458 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-07 21:36:10] 2026-03-07 20:35:10,458 | INFO     | log transfer has been attempted: DONE
[2026-03-07 21:36:10] 2026-03-07 20:35:10,458 | INFO     | job 7038513242 has finished - writing final server update
[2026-03-07 21:36:10] 2026-03-07 20:35:10,458 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3322420/.job.ad'
[2026-03-07 21:36:10] 2026-03-07 20:35:10,458 | INFO     | total number of processed events: 400 (read)
[2026-03-07 21:36:10] 2026-03-07 20:35:10,486 | INFO     | using path: /var/lib/boinc/var/slot20/slots/2/PanDA_Pilot-7038513242/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 21:36:10] 2026-03-07 20:35:10,487 | INFO     | extracted standard info from prmon json
[2026-03-07 21:36:10] 2026-03-07 20:35:10,487 | INFO     | extracted standard memory fields from prmon json
[2026-03-07 21:36:10] 2026-03-07 20:35:10,487 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-07 21:36:10] 2026-03-07 20:35:10,487 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-07 21:36:10] 2026-03-07 20:35:10,487 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-07 21:36:10] 2026-03-07 20:35:10,494 | INFO     | fitting pss+swap vs Time
[2026-03-07 21:36:10] 2026-03-07 20:35:10,495 | INFO     | sum of square deviations: 1154663510.0
[2026-03-07 21:36:10] 2026-03-07 20:35:10,496 | INFO     | sum of deviations: 22587315643.000004
[2026-03-07 21:36:10] 2026-03-07 20:35:10,496 | INFO     | mean x: 1772910956.0
[2026-03-07 21:36:10] 2026-03-07 20:35:10,496 | INFO     | mean y: 2300877.264516129
[2026-03-07 21:36:10] 2026-03-07 20:35:10,496 | INFO     | intersect: -34679057824.462265
[2026-03-07 21:36:10] 2026-03-07 20:35:10,496 | INFO     | chi2: 1.4608646732109078
[2026-03-07 21:36:10] 2026-03-07 20:35:10,496 | INFO     | sum of square deviations: 1046484737.5
[2026-03-07 21:36:10] 2026-03-07 20:35:10,497 | INFO     | sum of deviations: 21739487562.0
[2026-03-07 21:36:10] 2026-03-07 20:35:10,497 | INFO     | mean x: 1772910803.5
[2026-03-07 21:36:10] 2026-03-07 20:35:10,498 | INFO     | mean y: 2299681.6666666665
[2026-03-07 21:36:10] 2026-03-07 20:35:10,498 | INFO     | intersect: -36827833601.78572
[2026-03-07 21:36:10] 2026-03-07 20:35:10,498 | INFO     | chi2: 1.4621572127925637
[2026-03-07 21:36:10] 2026-03-07 20:35:10,498 | INFO     | current chi2=1.4621572127925637 (change=-0.08847770812439006 %)
[2026-03-07 21:36:10] 2026-03-07 20:35:10,498 | INFO     | right removable region: 149
[2026-03-07 21:36:10] 2026-03-07 20:35:10,498 | INFO     | sum of square deviations: 1046484737.5
[2026-03-07 21:36:10] 2026-03-07 20:35:10,499 | INFO     | sum of deviations: 695422021.0
[2026-03-07 21:36:10] 2026-03-07 20:35:10,499 | INFO     | mean x: 1772911108.5
[2026-03-07 21:36:10] 2026-03-07 20:35:10,499 | INFO     | mean y: 2331282.08
[2026-03-07 21:36:10] 2026-03-07 20:35:10,499 | INFO     | intersect: -1175823909.243486
[2026-03-07 21:36:10] 2026-03-07 20:35:10,500 | INFO     | chi2: 0.0021303584173687547
[2026-03-07 21:36:10] 2026-03-07 20:35:10,505 | INFO     | current chi2=0.0021303584173687547 (change=99.85417140571369 %)
[2026-03-07 21:36:10] 2026-03-07 20:35:10,505 | INFO     | sum of square deviations: 945282840.0
[2026-03-07 21:36:10] 2026-03-07 20:35:10,506 | INFO     | sum of deviations: 599851613.0
[2026-03-07 21:36:10] 2026-03-07 20:35:10,506 | INFO     | mean x: 1772911261.0
[2026-03-07 21:36:10] 2026-03-07 20:35:10,506 | INFO     | mean y: 2331419.751724138
[2026-03-07 21:36:10] 2026-03-07 20:35:10,506 | INFO     | intersect: -1122711408.2940214
[2026-03-07 21:36:10] 2026-03-07 20:35:10,506 | INFO     | chi2: 0.002029922376172941
[2026-03-07 21:36:10] 2026-03-07 20:35:10,507 | INFO     | current chi2=0.002029922376172941 (change=4.7145137821392655 %)
[2026-03-07 21:36:10] 2026-03-07 20:35:10,507 | INFO     | left removable region: 20
[2026-03-07 21:36:10] 2026-03-07 20:35:10,507 | INFO     | sum of square deviations: 665612480.0
[2026-03-07 21:36:10] 2026-03-07 20:35:10,508 | INFO     | sum of deviations: 1414858461.0
[2026-03-07 21:36:10] 2026-03-07 20:35:10,508 | INFO     | mean x: 1772911383.0
[2026-03-07 21:36:10] 2026-03-07 20:35:10,508 | INFO     | mean y: 2329438.8217054266
[2026-03-07 21:36:10] 2026-03-07 20:35:10,508 | INFO     | intersect: -3766257759.0036144
[2026-03-07 21:36:10] 2026-03-07 20:35:10,508 | INFO     | chi2: 6.542533832259943e-05
[2026-03-07 21:36:10] 2026-03-07 20:35:10,508 | INFO     | current memory leak: 2.13 B/s (using 129 data points, chi2=0.00)
[2026-03-07 21:36:10] 2026-03-07 20:35:10,509 | INFO     | could have reported an average CPU frequency of 2697 MHz (9 samples)
[2026-03-07 21:36:10] 2026-03-07 20:35:10,509 | INFO     | ..............................
[2026-03-07 21:36:10] 2026-03-07 20:35:10,509 | INFO     | . Timing measurements:
[2026-03-07 21:36:10] 2026-03-07 20:35:10,509 | INFO     | . get job = 0 s
[2026-03-07 21:36:10] 2026-03-07 20:35:10,509 | INFO     | . initial setup = 21 s
[2026-03-07 21:36:10] 2026-03-07 20:35:10,509 | INFO     | . payload setup = 23 s
[2026-03-07 21:36:10] 2026-03-07 20:35:10,509 | INFO     | . stage-in = 0 s
[2026-03-07 21:36:10] 2026-03-07 20:35:10,509 | INFO     | . payload execution = 9469 s
[2026-03-07 21:36:10] 2026-03-07 20:35:10,509 | INFO     | . stage-out = 0 s
[2026-03-07 21:36:10] 2026-03-07 20:35:10,509 | INFO     | . log creation = 0 s
[2026-03-07 21:36:10] 2026-03-07 20:35:10,510 | INFO     | ..............................
[2026-03-07 21:36:10] 2026-03-07 20:35:10,614 | INFO     | 
[2026-03-07 21:36:10] 2026-03-07 20:35:10,614 | INFO     | job summary report
[2026-03-07 21:36:10] 2026-03-07 20:35:10,614 | INFO     | --------------------------------------------------
[2026-03-07 21:36:10] 2026-03-07 20:35:10,614 | INFO     | PanDA job id: 7038513242
[2026-03-07 21:36:10] 2026-03-07 20:35:10,615 | INFO     | task id: 48955010
[2026-03-07 21:36:10] 2026-03-07 20:35:10,615 | INFO     | errors: (none)
[2026-03-07 21:36:10] 2026-03-07 20:35:10,615 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 21:36:10] 2026-03-07 20:35:10,615 | INFO     | pilot state: finished 
[2026-03-07 21:36:10] 2026-03-07 20:35:10,615 | INFO     | transexitcode: 0
[2026-03-07 21:36:10] 2026-03-07 20:35:10,615 | INFO     | exeerrorcode: 0
[2026-03-07 21:36:10] 2026-03-07 20:35:10,615 | INFO     | exeerrordiag: 
[2026-03-07 21:36:10] 2026-03-07 20:35:10,615 | INFO     | exitcode: 0
[2026-03-07 21:36:10] 2026-03-07 20:35:10,615 | INFO     | exitmsg: OK
[2026-03-07 21:36:10] 2026-03-07 20:35:10,615 | INFO     | cpuconsumptiontime: 34845 s
[2026-03-07 21:36:10] 2026-03-07 20:35:10,615 | INFO     | nevents: 400
[2026-03-07 21:36:10] 2026-03-07 20:35:10,615 | INFO     | neventsw: 0
[2026-03-07 21:36:10] 2026-03-07 20:35:10,615 | INFO     | pid: 3984889
[2026-03-07 21:36:10] 2026-03-07 20:35:10,616 | INFO     | pgrp: 3984889
[2026-03-07 21:36:10] 2026-03-07 20:35:10,616 | INFO     | corecount: 4
[2026-03-07 21:36:10] 2026-03-07 20:35:10,616 | INFO     | event service: False
[2026-03-07 21:36:10] 2026-03-07 20:35:10,616 | INFO     | sizes: {0: 2295324, 1: 2295785, 9496: 2324378, 9497: 2324377, 9499: 2333509, 9501: 2333711}
[2026-03-07 21:36:10] 2026-03-07 20:35:10,616 | INFO     | --------------------------------------------------
[2026-03-07 21:36:10] 2026-03-07 20:35:10,616 | INFO     | 
[2026-03-07 21:36:10] 2026-03-07 20:35:10,616 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot20/slots/2
[2026-03-07 21:36:10] 2026-03-07 20:35:10,626 | INFO     | time since job start (9502s) is within the limit (349056.0s)
[2026-03-07 21:36:10] 2026-03-07 20:35:10,657 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 21:36:10] 2026-03-07 20:35:10,657 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 21:36:10] 2026-03-07 20:35:10,657 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 21:36:10] 2026-03-07 20:35:10,657 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 21:36:10] 2026-03-07 20:35:10,658 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 21:36:10] 2026-03-07 20:35:10,658 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 21:36:10] 2026-03-07 20:35:10,658 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 21:36:10] 2026-03-07 20:35:10,658 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 21:36:10] 2026-03-07 20:35:10,658 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 21:36:10] 2026-03-07 20:35:10,658 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 21:36:10] 2026-03-07 20:35:10,658 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 21:36:10] 2026-03-07 20:35:10,658 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 21:36:10] 2026-03-07 20:35:10,658 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 21:36:10] 2026-03-07 20:35:10,658 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 21:36:10] 2026-03-07 20:35:10,658 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 21:36:10] 2026-03-07 20:35:10,659 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 21:36:10] 2026-03-07 20:35:10,659 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 21:36:10] 2026-03-07 20:35:10,659 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 21:36:10] 2026-03-07 20:35:10,659 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 21:36:10] 2026-03-07 20:35:10,659 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 21:36:10] 2026-03-07 20:35:10,659 | INFO     | job 7038513242 has completed (purged errors)
[2026-03-07 21:36:10] 2026-03-07 20:35:10,659 | INFO     | overall cleanup function is called
[2026-03-07 21:36:10] 2026-03-07 20:35:11,669 | INFO     | --- collectZombieJob: --- 10, [3984889]
[2026-03-07 21:36:10] 2026-03-07 20:35:11,669 | INFO     | zombie collector waiting for pid 3984889
[2026-03-07 21:36:10] 2026-03-07 20:35:11,669 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 21:36:10] 2026-03-07 20:35:11,669 | INFO     | collected zombie processes
[2026-03-07 21:36:10] 2026-03-07 20:35:11,669 | INFO     | will attempt to kill all subprocesses of pid=3984889
[2026-03-07 21:36:10] 2026-03-07 20:35:12,518 | INFO     | process IDs to be killed: [3984889] (in reverse order)
[2026-03-07 21:36:10] 2026-03-07 20:35:12,891 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 21:36:10] 2026-03-07 20:35:12,891 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 21:36:10] 2026-03-07 20:35:12,928 | INFO     | did not find any defunct processes belonging to 3984889
[2026-03-07 21:36:10] 2026-03-07 20:35:12,965 | INFO     | did not find any defunct processes belonging to 3984889
[2026-03-07 21:36:10] 2026-03-07 20:35:12,965 | INFO     | ready for new job
[2026-03-07 21:36:10] 2026-03-07 20:35:12,965 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 21:36:10] 2026-03-07 20:35:12,968 | INFO     | **************************************
[2026-03-07 21:36:10] 2026-03-07 20:35:12,968 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 21:36:10] 2026-03-07 20:35:12,968 | INFO     | **************************************
[2026-03-07 21:36:10] 2026-03-07 20:35:12,968 | INFO     | 
[2026-03-07 21:36:10] 2026-03-07 20:35:12,977 | INFO     | architecture information:
[2026-03-07 21:36:10] 2026-03-07 20:35:12,981 | INFO     | executing command: cat /etc/os-release
[2026-03-07 21:36:10] 2026-03-07 20:35:13,010 | INFO     | cat /etc/os-release:
[2026-03-07 21:36:10] NAME="CentOS Linux"
[2026-03-07 21:36:10] VERSION="7 (Core)"
[2026-03-07 21:36:10] ID="centos"
[2026-03-07 21:36:10] ID_LIKE="rhel fedora"
[2026-03-07 21:36:10] VERSION_ID="7"
[2026-03-07 21:36:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 21:36:10] ANSI_COLOR="0;31"
[2026-03-07 21:36:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 21:36:10] HOME_URL="https://www.centos.org/"
[2026-03-07 21:36:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 21:36:10] 
[2026-03-07 21:36:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 21:36:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 21:36:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 21:36:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 21:36:10] 
[2026-03-07 21:36:10] 2026-03-07 20:35:13,011 | INFO     | **************************************
[2026-03-07 21:36:10] 2026-03-07 20:35:13,513 | INFO     | executing command: df -mP /var/lib/boinc/var/slot20/slots/2
[2026-03-07 21:36:10] 2026-03-07 20:35:13,548 | INFO     | sufficient remaining disk space (58167656448 B)
[2026-03-07 21:36:10] 2026-03-07 20:35:13,549 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 21:36:10] 2026-03-07 20:35:13,549 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 21:36:10] 2026-03-07 20:35:13,549 | INFO     | update_server=False
[2026-03-07 21:36:10] 2026-03-07 20:35:13,549 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 21:36:10] 2026-03-07 20:35:13,549 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 21:36:10] 2026-03-07 20:35:13,550 | INFO     | aborting loop
[2026-03-07 21:36:10] 2026-03-07 20:35:13,728 | INFO     | all data control threads have been joined
[2026-03-07 21:36:10] 2026-03-07 20:35:14,399 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 21:36:10] 2026-03-07 20:35:14,554 | INFO     | [job] retrieve thread has finished
[2026-03-07 21:36:10] 2026-03-07 20:35:14,555 | INFO     | [job] job monitor thread has finished
[2026-03-07 21:36:10] 2026-03-07 20:35:14,698 | INFO     | [job] validate thread has finished
[2026-03-07 21:36:10] 2026-03-07 20:35:14,733 | INFO     | [data] control thread has finished
[2026-03-07 21:36:10] 2026-03-07 20:35:14,828 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 21:36:10] 2026-03-07 20:35:14,875 | INFO     | [payload] failed_post thread has finished
[2026-03-07 21:36:10] 2026-03-07 20:35:14,991 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 21:36:10] 2026-03-07 20:35:15,027 | INFO     | all payload control threads have been joined
[2026-03-07 21:36:10] 2026-03-07 20:35:15,177 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 21:36:10] 2026-03-07 20:35:15,178 | INFO     | [data] copytool_in thread has finished
[2026-03-07 21:36:10] 2026-03-07 20:35:15,214 | INFO     | all job control threads have been joined
[2026-03-07 21:36:10] 2026-03-07 20:35:15,579 | INFO     | [payload] validate_post thread has finished
[2026-03-07 21:36:10] 2026-03-07 20:35:15,627 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 21:36:10] 2026-03-07 20:35:15,679 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 21:36:10] 2026-03-07 20:35:16,032 | INFO     | [payload] control thread has finished
[2026-03-07 21:36:10] 2026-03-07 20:35:16,219 | INFO     | [job] control thread has finished
[2026-03-07 21:36:10] 2026-03-07 20:35:16,404 | INFO     | [data] copytool_out thread has finished
[2026-03-07 21:36:10] 2026-03-07 20:35:16,632 | INFO     | [job] queue monitor thread has finished
[2026-03-07 21:36:10] 2026-03-07 20:35:18,997 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 21:36:10] 2026-03-07 20:35:24,533 | INFO     | job.realtimelogging is not enabled
[2026-03-07 21:36:10] 2026-03-07 20:35:25,538 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 21:36:10] 2026-03-07 20:35:44,708 | INFO     | PID=3979552 has CPU usage=7.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-07 21:36:10] 2026-03-07 20:35:44,708 | INFO     | .. there are 28 such processes running
[2026-03-07 21:36:10] 2026-03-07 20:35:44,708 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 21:36:10] 2026-03-07 20:35:44,709 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 21:36:10] 2026-03-07 20:35:44,709 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 21:36:10] 2026-03-07 20:36:03,524 | INFO     | [monitor] cgroup control has ended
[2026-03-07 21:36:10] 2026-03-07 20:36:04,623 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23148324394816)>', '<ExcThread(monitor, started 23148073572096)>']
[2026-03-07 21:36:10] 2026-03-07 20:36:04,809 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 21:36:10] 2026-03-07 20:36:04,809 | INFO     | [monitor] control thread has ended
[2026-03-07 21:36:10] 2026-03-07 20:36:09,648 | INFO     | all workflow threads have been joined
[2026-03-07 21:36:10] 2026-03-07 20:36:09,648 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 21:36:10] 2026-03-07 20:36:09,649 | INFO     | traces error code: 0
[2026-03-07 21:36:10] 2026-03-07 20:36:09,649 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 21:36:10] 2026-03-07 20:36:09,831 [wrapper] ==== pilot stdout END ====
[2026-03-07 21:36:10] 2026-03-07 20:36:09,836 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 21:36:10] 2026-03-07 20:36:09,845 [wrapper] pilotpid: 3979552
[2026-03-07 21:36:10] 2026-03-07 20:36:09,849 [wrapper] Pilot exit status: 0
[2026-03-07 21:36:10] 2026-03-07 20:36:09,951 [wrapper] pandaids: 7038513242
[2026-03-07 21:36:10] 2026-03-07 20:36:10,190 [wrapper] cleanup supervisor_pilot  224636 3979553
[2026-03-07 21:36:10] 2026-03-07 20:36:10,195 [wrapper] Test setup, not cleaning
[2026-03-07 21:36:10] 2026-03-07 20:36:10,199 [wrapper] apfmon messages muted
[2026-03-07 21:36:10] 2026-03-07 20:36:10,203 [wrapper] ==== wrapper stdout END ====
[2026-03-07 21:36:10] 2026-03-07 20:36:10,211 [wrapper] ==== wrapper stderr END ====
[2026-03-07 21:36:10]  *** Error codes and diagnostics ***
[2026-03-07 21:36:10]     "exeErrorCode": 0,
[2026-03-07 21:36:10]     "exeErrorDiag": "",
[2026-03-07 21:36:10]     "pilotErrorCode": 0,
[2026-03-07 21:36:10]     "pilotErrorDiag": "",
[2026-03-07 21:36:10]  *** Listing of results directory ***
[2026-03-07 21:36:10] total 606472
[2026-03-07 21:36:10] -rw-r--r--. 1 boinc boinc    584627 Mar  4 14:58 pilot3.tar.gz
[2026-03-07 21:36:10] -rwx------. 1 boinc boinc     36322 Mar  4 15:56 runpilot2-wrapper.sh
[2026-03-07 21:36:10] -rw-r--r--. 1 boinc boinc      5111 Mar  4 15:59 queuedata.json
[2026-03-07 21:36:10] -rw-r--r--. 1 boinc boinc       100 Mar  7 18:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 21:36:10] -rwxr-xr-x. 1 boinc boinc      7986 Mar  7 18:55 run_atlas
[2026-03-07 21:36:10] -rw-r--r--. 1 boinc boinc       105 Mar  7 18:55 job.xml
[2026-03-07 21:36:10] -rw-r--r--. 2 boinc boinc 435860576 Mar  7 18:55 EVNT.46701403._001029.pool.root.1
[2026-03-07 21:36:10] -rw-r--r--. 1 boinc boinc      6615 Mar  7 18:55 init_data.xml
[2026-03-07 21:36:10] -rw-r--r--. 2 boinc boinc    597943 Mar  7 18:55 input.tar.gz
[2026-03-07 21:36:10] -rw-r--r--. 2 boinc boinc     15845 Mar  7 18:55 start_atlas.sh
[2026-03-07 21:36:10] drwxrwx--x. 2 boinc boinc      4096 Mar  7 18:55 shared
[2026-03-07 21:36:10] -rw-r--r--. 1 boinc boinc         0 Mar  7 18:55 boinc_lockfile
[2026-03-07 21:36:10] -rw-r--r--. 1 boinc boinc      2559 Mar  7 18:55 pandaJob.out
[2026-03-07 21:36:10] -rw-------. 1 boinc boinc    999177 Mar  7 18:56 agis_schedconf.cvmfs.json
[2026-03-07 21:36:10] -rw-------. 1 boinc boinc   1521291 Mar  7 18:56 agis_ddmendpoints.agis.ALL.json
[2026-03-07 21:36:10] -rw-------. 1 boinc boinc       439 Mar  7 18:56 workernode_map.json
[2026-03-07 21:36:10] drwx------. 5 boinc boinc      4096 Mar  7 18:56 pilot3
[2026-03-07 21:36:10] -rw-------. 1 boinc boinc 177943361 Mar  7 21:34 HITS.48955010._001418.pool.root.1
[2026-03-07 21:36:10] -rw-r--r--. 1 boinc boinc       531 Mar  7 21:34 boinc_task_state.xml
[2026-03-07 21:36:10] -rw-------. 1 boinc boinc      1026 Mar  7 21:35 memory_monitor_summary.json
[2026-03-07 21:36:10] -rw-------. 1 boinc boinc    338011 Mar  7 21:35 log.48955010._001418.job.log.tgz.1
[2026-03-07 21:36:10] -rw-------. 1 boinc boinc      6342 Mar  7 21:35 heartbeat.json
[2026-03-07 21:36:10] -rw-------. 1 boinc boinc        95 Mar  7 21:35 pilot_heartbeat.json
[2026-03-07 21:36:10] -rw-r--r--. 1 boinc boinc        27 Mar  7 21:36 wrapper_checkpoint.txt
[2026-03-07 21:36:10] -rw-r--r--. 1 boinc boinc      8192 Mar  7 21:36 boinc_mmap_file
[2026-03-07 21:36:10] -rw-------. 1 boinc boinc      4901 Mar  7 21:36 pilotlog.txt
[2026-03-07 21:36:10] -rw-------. 1 boinc boinc   1305189 Mar  7 21:36 log.48955010._001418.job.log.1
[2026-03-07 21:36:10] -rw-------. 1 boinc boinc       357 Mar  7 21:36 output.list
[2026-03-07 21:36:10] -rw-r--r--. 1 boinc boinc       620 Mar  7 21:36 runtime_log
[2026-03-07 21:36:10] -rw-------. 1 boinc boinc   1658880 Mar  7 21:36 result.tar.gz
[2026-03-07 21:36:10] -rw-------. 1 boinc boinc       663 Mar  7 21:36 jp3LDm6o2H9n9Rq4apOajLDm4fhM0noT9bVooX4SDmxmILDm9P9Qqn.diag
[2026-03-07 21:36:10] -rw-r--r--. 1 boinc boinc      9204 Mar  7 21:36 runtime_log.err
[2026-03-07 21:36:10] -rw-r--r--. 1 boinc boinc     21107 Mar  7 21:36 stderr.txt
[2026-03-07 21:36:10] HITS file was successfully produced:
[2026-03-07 21:36:10] -rw-------. 1 boinc boinc 177943361 Mar  7 21:34 shared/HITS.pool.root.1
[2026-03-07 21:36:10]  *** Contents of shared directory: ***
[2026-03-07 21:36:10] total 601652
[2026-03-07 21:36:10] -rw-r--r--. 2 boinc boinc 435860576 Mar  7 18:55 ATLAS.root_0
[2026-03-07 21:36:10] -rw-r--r--. 2 boinc boinc    597943 Mar  7 18:55 input.tar.gz
[2026-03-07 21:36:10] -rw-r--r--. 2 boinc boinc     15845 Mar  7 18:55 start_atlas.sh
[2026-03-07 21:36:10] -rw-------. 1 boinc boinc 177943361 Mar  7 21:34 HITS.pool.root.1
[2026-03-07 21:36:10] -rw-------. 1 boinc boinc   1658880 Mar  7 21:36 result.tar.gz
21:36:12 (3975234): run_atlas exited; CPU time 35406.190360
21:36:12 (3975234): called boinc_finish(0)

</stderr_txt>
]]>

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