Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:53:06 (1980238): wrapper (7.7.26015): starting
05:53:06 (1980238): wrapper: running run_atlas (--nthreads 4)
[2026-03-07 05:53:06] Arguments: --nthreads 4
[2026-03-07 05:53:06] Threads: 4
[2026-03-07 05:53:06] Checking for CVMFS
[2026-03-07 05:53:06] No cvmfs_config command found, will try listing directly
[2026-03-07 05:53:06] CVMFS is ok
[2026-03-07 05:53:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 05:53:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-07 05:53:06] Further information can be found at the LHC@home message board.
[2026-03-07 05:53:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 05:53:06] Checking for apptainer binary...
[2026-03-07 05:53:06] which: no apptainer in ((null))
[2026-03-07 05:53:06] apptainer is not installed, using version from CVMFS
[2026-03-07 05:53:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 05:53:06] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot16/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2026-03-07 05:53:06] apptainer works
[2026-03-07 05:53:06] Set ATHENA_PROC_NUMBER=4
[2026-03-07 05:53:06] Set ATHENA_CORE_NUMBER=4
[2026-03-07 05:53:06] Starting ATLAS job with PandaID=7038507887
[2026-03-07 05:53:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot16/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 08:29:50]  *** The last 200 lines of the pilot log: ***
[2026-03-07 08:29:50] 2026-03-07 07:28:59,417 | INFO     | total number of processed events: 400 (read)
[2026-03-07 08:29:50] 2026-03-07 07:28:59,443 | INFO     | using path: /var/lib/boinc/var/slot16/slots/1/PanDA_Pilot-7038507887/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 08:29:50] 2026-03-07 07:28:59,443 | INFO     | extracted standard info from prmon json
[2026-03-07 08:29:50] 2026-03-07 07:28:59,443 | INFO     | extracted standard memory fields from prmon json
[2026-03-07 08:29:50] 2026-03-07 07:28:59,443 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-07 08:29:50] 2026-03-07 07:28:59,444 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-07 08:29:50] 2026-03-07 07:28:59,444 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-07 08:29:50] 2026-03-07 07:28:59,447 | INFO     | fitting pss+swap vs Time
[2026-03-07 08:29:50] 2026-03-07 07:28:59,448 | INFO     | sum of square deviations: 1110539892.0
[2026-03-07 08:29:50] 2026-03-07 07:28:59,448 | INFO     | sum of deviations: 11978218335.0
[2026-03-07 08:29:50] 2026-03-07 07:28:59,448 | INFO     | mean x: 1772863873.0
[2026-03-07 08:29:50] 2026-03-07 07:28:59,449 | INFO     | mean y: 2291912.2352941176
[2026-03-07 08:29:50] 2026-03-07 07:28:59,449 | INFO     | intersect: -19119714151.66548
[2026-03-07 08:29:50] 2026-03-07 07:28:59,449 | INFO     | chi2: 2.0899607705719987
[2026-03-07 08:29:50] 2026-03-07 07:28:59,449 | INFO     | sum of square deviations: 1005179777.0
[2026-03-07 08:29:50] 2026-03-07 07:28:59,450 | INFO     | sum of deviations: 20772747453.5
[2026-03-07 08:29:50] 2026-03-07 07:28:59,450 | INFO     | mean x: 1772863720.5
[2026-03-07 08:29:50] 2026-03-07 07:28:59,450 | INFO     | mean y: 2304275.6824324327
[2026-03-07 08:29:50] 2026-03-07 07:28:59,450 | INFO     | intersect: -36635172102.25599
[2026-03-07 08:29:50] 2026-03-07 07:28:59,451 | INFO     | chi2: 1.2984076184770899
[2026-03-07 08:29:50] 2026-03-07 07:28:59,451 | INFO     | current chi2=1.2984076184770899 (change=37.87406745813079 %)
[2026-03-07 08:29:50] 2026-03-07 07:28:59,451 | INFO     | sum of square deviations: 906703512.0
[2026-03-07 08:29:50] 2026-03-07 07:28:59,452 | INFO     | sum of deviations: 19847916236.0
[2026-03-07 08:29:50] 2026-03-07 07:28:59,452 | INFO     | mean x: 1772863568.0
[2026-03-07 08:29:50] 2026-03-07 07:28:59,452 | INFO     | mean y: 2302842.944055944
[2026-03-07 08:29:50] 2026-03-07 07:28:59,452 | INFO     | intersect: -38806025491.31312
[2026-03-07 08:29:50] 2026-03-07 07:28:59,452 | INFO     | chi2: 1.299565235943612
[2026-03-07 08:29:50] 2026-03-07 07:28:59,452 | INFO     | current chi2=1.299565235943612 (change=-0.08915670626455396 %)
[2026-03-07 08:29:50] 2026-03-07 07:28:59,453 | INFO     | right removable region: 142
[2026-03-07 08:29:50] 2026-03-07 07:28:59,453 | INFO     | sum of square deviations: 1005179777.0
[2026-03-07 08:29:50] 2026-03-07 07:28:59,454 | INFO     | sum of deviations: -6843486025.5
[2026-03-07 08:29:50] 2026-03-07 07:28:59,454 | INFO     | mean x: 1772864025.5
[2026-03-07 08:29:50] 2026-03-07 07:28:59,454 | INFO     | mean y: 2318690.195945946
[2026-03-07 08:29:50] 2026-03-07 07:28:59,454 | INFO     | intersect: 12072368706.354324
[2026-03-07 08:29:50] 2026-03-07 07:28:59,454 | INFO     | chi2: 0.8204737161244032
[2026-03-07 08:29:50] 2026-03-07 07:28:59,454 | INFO     | current chi2=0.8204737161244032 (change=60.742147523666254 %)
[2026-03-07 08:29:50] 2026-03-07 07:28:59,454 | INFO     | sum of square deviations: 906703512.0
[2026-03-07 08:29:50] 2026-03-07 07:28:59,455 | INFO     | sum of deviations: -6714430979.0
[2026-03-07 08:29:50] 2026-03-07 07:28:59,455 | INFO     | mean x: 1772864178.0
[2026-03-07 08:29:50] 2026-03-07 07:28:59,455 | INFO     | mean y: 2318462.916083916
[2026-03-07 08:29:50] 2026-03-07 07:28:59,456 | INFO     | intersect: 13130947613.216068
[2026-03-07 08:29:50] 2026-03-07 07:28:59,456 | INFO     | chi2: 0.8184390904756257
[2026-03-07 08:29:50] 2026-03-07 07:28:59,456 | INFO     | current chi2=0.8184390904756257 (change=0.24798181937970165 %)
[2026-03-07 08:29:50] 2026-03-07 07:28:59,456 | INFO     | left removable region: 20
[2026-03-07 08:29:50] 2026-03-07 07:28:59,456 | INFO     | sum of square deviations: 563026370.5
[2026-03-07 08:29:50] 2026-03-07 07:28:59,457 | INFO     | sum of deviations: 2044305901.500001
[2026-03-07 08:29:50] 2026-03-07 07:28:59,457 | INFO     | mean x: 1772864147.5
[2026-03-07 08:29:50] 2026-03-07 07:28:59,457 | INFO     | mean y: 2331645.1721311477
[2026-03-07 08:29:50] 2026-03-07 07:28:59,457 | INFO     | intersect: -6434803148.48496
[2026-03-07 08:29:50] 2026-03-07 07:28:59,457 | INFO     | chi2: 0.00019981669002726022
[2026-03-07 08:29:50] 2026-03-07 07:28:59,457 | INFO     | current memory leak: 3.63 B/s (using 122 data points, chi2=0.00)
[2026-03-07 08:29:50] 2026-03-07 07:28:59,458 | INFO     | could have reported an average CPU frequency of 2730 MHz (9 samples)
[2026-03-07 08:29:50] 2026-03-07 07:28:59,458 | INFO     | ..............................
[2026-03-07 08:29:50] 2026-03-07 07:28:59,458 | INFO     | . Timing measurements:
[2026-03-07 08:29:50] 2026-03-07 07:28:59,458 | INFO     | . get job = 0 s
[2026-03-07 08:29:50] 2026-03-07 07:28:59,458 | INFO     | . initial setup = 8 s
[2026-03-07 08:29:50] 2026-03-07 07:28:59,458 | INFO     | . payload setup = 9 s
[2026-03-07 08:29:50] 2026-03-07 07:28:59,458 | INFO     | . stage-in = 0 s
[2026-03-07 08:29:50] 2026-03-07 07:28:59,459 | INFO     | . payload execution = 9300 s
[2026-03-07 08:29:50] 2026-03-07 07:28:59,459 | INFO     | . stage-out = 1 s
[2026-03-07 08:29:50] 2026-03-07 07:28:59,459 | INFO     | . log creation = 0 s
[2026-03-07 08:29:50] 2026-03-07 07:28:59,459 | INFO     | ..............................
[2026-03-07 08:29:50] 2026-03-07 07:28:59,568 | INFO     | 
[2026-03-07 08:29:50] 2026-03-07 07:28:59,568 | INFO     | job summary report
[2026-03-07 08:29:50] 2026-03-07 07:28:59,568 | INFO     | --------------------------------------------------
[2026-03-07 08:29:50] 2026-03-07 07:28:59,568 | INFO     | PanDA job id: 7038507887
[2026-03-07 08:29:50] 2026-03-07 07:28:59,568 | INFO     | task id: 48955006
[2026-03-07 08:29:50] 2026-03-07 07:28:59,569 | INFO     | errors: (none)
[2026-03-07 08:29:50] 2026-03-07 07:28:59,569 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 08:29:50] 2026-03-07 07:28:59,569 | INFO     | pilot state: finished 
[2026-03-07 08:29:50] 2026-03-07 07:28:59,569 | INFO     | transexitcode: 0
[2026-03-07 08:29:50] 2026-03-07 07:28:59,569 | INFO     | exeerrorcode: 0
[2026-03-07 08:29:50] 2026-03-07 07:28:59,569 | INFO     | exeerrordiag: 
[2026-03-07 08:29:50] 2026-03-07 07:28:59,569 | INFO     | exitcode: 0
[2026-03-07 08:29:50] 2026-03-07 07:28:59,569 | INFO     | exitmsg: OK
[2026-03-07 08:29:50] 2026-03-07 07:28:59,569 | INFO     | cpuconsumptiontime: 35601 s
[2026-03-07 08:29:50] 2026-03-07 07:28:59,569 | INFO     | nevents: 400
[2026-03-07 08:29:50] 2026-03-07 07:28:59,569 | INFO     | neventsw: 0
[2026-03-07 08:29:50] 2026-03-07 07:28:59,570 | INFO     | pid: 1989547
[2026-03-07 08:29:50] 2026-03-07 07:28:59,570 | INFO     | pgrp: 1989547
[2026-03-07 08:29:50] 2026-03-07 07:28:59,570 | INFO     | corecount: 4
[2026-03-07 08:29:50] 2026-03-07 07:28:59,570 | INFO     | event service: False
[2026-03-07 08:29:50] 2026-03-07 07:28:59,570 | INFO     | sizes: {0: 2295602, 1: 2295808, 11: 2295836, 9314: 2324484, 9316: 2333504, 9319: 2333946}
[2026-03-07 08:29:50] 2026-03-07 07:28:59,570 | INFO     | --------------------------------------------------
[2026-03-07 08:29:50] 2026-03-07 07:28:59,570 | INFO     | 
[2026-03-07 08:29:50] 2026-03-07 07:28:59,570 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot16/slots/1
[2026-03-07 08:29:50] 2026-03-07 07:28:59,606 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 08:29:50] 2026-03-07 07:28:59,607 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 08:29:50] 2026-03-07 07:28:59,607 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 08:29:50] 2026-03-07 07:28:59,607 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 08:29:50] 2026-03-07 07:28:59,607 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 08:29:50] 2026-03-07 07:28:59,607 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 08:29:50] 2026-03-07 07:28:59,607 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 08:29:50] 2026-03-07 07:28:59,607 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 08:29:50] 2026-03-07 07:28:59,607 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 08:29:50] 2026-03-07 07:28:59,607 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 08:29:50] 2026-03-07 07:28:59,607 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 08:29:50] 2026-03-07 07:28:59,608 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 08:29:50] 2026-03-07 07:28:59,608 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 08:29:50] 2026-03-07 07:28:59,608 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 08:29:50] 2026-03-07 07:28:59,608 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 08:29:50] 2026-03-07 07:28:59,608 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 08:29:50] 2026-03-07 07:28:59,608 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 08:29:50] 2026-03-07 07:28:59,608 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 08:29:50] 2026-03-07 07:28:59,608 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 08:29:50] 2026-03-07 07:28:59,608 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 08:29:50] 2026-03-07 07:28:59,609 | INFO     | job 7038507887 has completed (purged errors)
[2026-03-07 08:29:50] 2026-03-07 07:28:59,609 | INFO     | overall cleanup function is called
[2026-03-07 08:29:50] 2026-03-07 07:29:00,617 | INFO     | --- collectZombieJob: --- 10, [1989547]
[2026-03-07 08:29:50] 2026-03-07 07:29:00,618 | INFO     | zombie collector waiting for pid 1989547
[2026-03-07 08:29:50] 2026-03-07 07:29:00,618 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 08:29:50] 2026-03-07 07:29:00,618 | INFO     | collected zombie processes
[2026-03-07 08:29:50] 2026-03-07 07:29:00,618 | INFO     | will attempt to kill all subprocesses of pid=1989547
[2026-03-07 08:29:50] 2026-03-07 07:29:01,562 | INFO     | process IDs to be killed: [1989547] (in reverse order)
[2026-03-07 08:29:50] 2026-03-07 07:29:01,964 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 08:29:50] 2026-03-07 07:29:01,965 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 08:29:50] 2026-03-07 07:29:01,995 | INFO     | did not find any defunct processes belonging to 1989547
[2026-03-07 08:29:50] 2026-03-07 07:29:02,023 | INFO     | did not find any defunct processes belonging to 1989547
[2026-03-07 08:29:50] 2026-03-07 07:29:02,023 | INFO     | ready for new job
[2026-03-07 08:29:50] 2026-03-07 07:29:02,023 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 08:29:50] 2026-03-07 07:29:02,025 | INFO     | **************************************
[2026-03-07 08:29:50] 2026-03-07 07:29:02,025 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 08:29:50] 2026-03-07 07:29:02,026 | INFO     | **************************************
[2026-03-07 08:29:50] 2026-03-07 07:29:02,026 | INFO     | 
[2026-03-07 08:29:50] 2026-03-07 07:29:02,034 | INFO     | architecture information:
[2026-03-07 08:29:50] 2026-03-07 07:29:02,035 | INFO     | executing command: cat /etc/os-release
[2026-03-07 08:29:50] 2026-03-07 07:29:02,073 | INFO     | cat /etc/os-release:
[2026-03-07 08:29:50] NAME="CentOS Linux"
[2026-03-07 08:29:50] VERSION="7 (Core)"
[2026-03-07 08:29:50] ID="centos"
[2026-03-07 08:29:50] ID_LIKE="rhel fedora"
[2026-03-07 08:29:50] VERSION_ID="7"
[2026-03-07 08:29:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 08:29:50] ANSI_COLOR="0;31"
[2026-03-07 08:29:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 08:29:50] HOME_URL="https://www.centos.org/"
[2026-03-07 08:29:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 08:29:50] 
[2026-03-07 08:29:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 08:29:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 08:29:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 08:29:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 08:29:50] 
[2026-03-07 08:29:50] 2026-03-07 07:29:02,074 | INFO     | **************************************
[2026-03-07 08:29:50] 2026-03-07 07:29:02,576 | INFO     | executing command: df -mP /var/lib/boinc/var/slot16/slots/1
[2026-03-07 08:29:50] 2026-03-07 07:29:02,604 | INFO     | sufficient remaining disk space (67560800256 B)
[2026-03-07 08:29:50] 2026-03-07 07:29:02,604 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 08:29:50] 2026-03-07 07:29:02,605 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 08:29:50] 2026-03-07 07:29:02,605 | INFO     | update_server=False
[2026-03-07 08:29:50] 2026-03-07 07:29:02,605 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 08:29:50] 2026-03-07 07:29:02,709 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-07 08:29:50] 2026-03-07 07:29:02,710 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-07 08:29:50] 2026-03-07 07:29:02,710 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 08:29:50] 2026-03-07 07:29:02,710 | INFO     | will abort loop
[2026-03-07 08:29:50] 2026-03-07 07:29:02,984 | INFO     | all data control threads have been joined
[2026-03-07 08:29:50] 2026-03-07 07:29:03,022 | INFO     | all payload control threads have been joined
[2026-03-07 08:29:50] 2026-03-07 07:29:03,610 | INFO     | [job] retrieve thread has finished
[2026-03-07 08:29:50] 2026-03-07 07:29:03,716 | INFO     | [job] job monitor thread has finished
[2026-03-07 08:29:50] 2026-03-07 07:29:03,928 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 08:29:50] 2026-03-07 07:29:03,990 | INFO     | [data] control thread has finished
[2026-03-07 08:29:50] 2026-03-07 07:29:03,990 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 08:29:50] 2026-03-07 07:29:04,028 | INFO     | [payload] control thread has finished
[2026-03-07 08:29:50] 2026-03-07 07:29:04,228 | INFO     | [data] copytool_in thread has finished
[2026-03-07 08:29:50] 2026-03-07 07:29:04,267 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 08:29:50] 2026-03-07 07:29:04,292 | INFO     | all job control threads have been joined
[2026-03-07 08:29:50] 2026-03-07 07:29:04,579 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 08:29:50] 2026-03-07 07:29:04,877 | INFO     | [job] validate thread has finished
[2026-03-07 08:29:50] 2026-03-07 07:29:05,004 | INFO     | [payload] validate_post thread has finished
[2026-03-07 08:29:50] 2026-03-07 07:29:05,065 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 08:29:50] 2026-03-07 07:29:05,128 | INFO     | [payload] failed_post thread has finished
[2026-03-07 08:29:50] 2026-03-07 07:29:05,199 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 08:29:50] 2026-03-07 07:29:05,298 | INFO     | [job] control thread has finished
[2026-03-07 08:29:50] 2026-03-07 07:29:05,586 | INFO     | [job] queue monitor thread has finished
[2026-03-07 08:29:50] 2026-03-07 07:29:05,996 | INFO     | [data] copytool_out thread has finished
[2026-03-07 08:29:50] 2026-03-07 07:29:09,206 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 08:29:50] 2026-03-07 07:29:13,660 | INFO     | job.realtimelogging is not enabled
[2026-03-07 08:29:50] 2026-03-07 07:29:14,665 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 08:29:50] 2026-03-07 07:29:33,183 | INFO     | PID=1984326 has CPU usage=11.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-07 08:29:50] 2026-03-07 07:29:33,183 | INFO     | .. there are 25 such processes running
[2026-03-07 08:29:50] 2026-03-07 07:29:33,183 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 08:29:50] 2026-03-07 07:29:33,184 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 08:29:50] 2026-03-07 07:29:33,184 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 08:29:50] 2026-03-07 07:29:43,870 | INFO     | [monitor] cgroup control has ended
[2026-03-07 08:29:50] 2026-03-07 07:29:44,580 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22749186570048)>', '<ExcThread(monitor, started 22748947822336)>']
[2026-03-07 08:29:50] 2026-03-07 07:29:45,252 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 08:29:50] 2026-03-07 07:29:45,252 | INFO     | [monitor] control thread has ended
[2026-03-07 08:29:50] 2026-03-07 07:29:49,604 | INFO     | all workflow threads have been joined
[2026-03-07 08:29:50] 2026-03-07 07:29:49,605 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 08:29:50] 2026-03-07 07:29:49,605 | INFO     | traces error code: 0
[2026-03-07 08:29:50] 2026-03-07 07:29:49,605 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 08:29:50] 2026-03-07 07:29:49,848 [wrapper] ==== pilot stdout END ====
[2026-03-07 08:29:50] 2026-03-07 07:29:49,853 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 08:29:50] 2026-03-07 07:29:49,857 [wrapper] pilotpid: 1984326
[2026-03-07 08:29:50] 2026-03-07 07:29:49,860 [wrapper] Pilot exit status: 0
[2026-03-07 08:29:50] 2026-03-07 07:29:49,922 [wrapper] pandaids: 7038507887
[2026-03-07 08:29:50] 2026-03-07 07:29:50,137 [wrapper] cleanup supervisor_pilot 2400962 1984327
[2026-03-07 08:29:50] 2026-03-07 07:29:50,143 [wrapper] Test setup, not cleaning
[2026-03-07 08:29:50] 2026-03-07 07:29:50,148 [wrapper] apfmon messages muted
[2026-03-07 08:29:50] 2026-03-07 07:29:50,151 [wrapper] ==== wrapper stdout END ====
[2026-03-07 08:29:50] 2026-03-07 07:29:50,155 [wrapper] ==== wrapper stderr END ====
[2026-03-07 08:29:50]  *** Error codes and diagnostics ***
[2026-03-07 08:29:50]     "exeErrorCode": 0,
[2026-03-07 08:29:50]     "exeErrorDiag": "",
[2026-03-07 08:29:50]     "pilotErrorCode": 0,
[2026-03-07 08:29:50]     "pilotErrorDiag": "",
[2026-03-07 08:29:50]  *** Listing of results directory ***
[2026-03-07 08:29:50] total 619716
[2026-03-07 08:29:50] -rw-r--r--. 1 boinc boinc    584627 Mar  4 14:58 pilot3.tar.gz
[2026-03-07 08:29:50] -rw-r--r--. 1 boinc boinc      5111 Mar  4 15:53 queuedata.json
[2026-03-07 08:29:50] -rwx------. 1 boinc boinc     36322 Mar  4 15:53 runpilot2-wrapper.sh
[2026-03-07 08:29:50] -rw-r--r--. 1 boinc boinc       100 Mar  7 04:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 08:29:50] -rwxr-xr-x. 1 boinc boinc      7986 Mar  7 04:24 run_atlas
[2026-03-07 08:29:50] -rw-r--r--. 1 boinc boinc       105 Mar  7 04:24 job.xml
[2026-03-07 08:29:50] -rw-r--r--. 2 boinc boinc 445870520 Mar  7 05:53 EVNT.46701403._000021.pool.root.1
[2026-03-07 08:29:50] -rw-r--r--. 1 boinc boinc      6615 Mar  7 05:53 init_data.xml
[2026-03-07 08:29:50] -rw-r--r--. 2 boinc boinc     15845 Mar  7 05:53 start_atlas.sh
[2026-03-07 08:29:50] drwxrwx--x. 2 boinc boinc      4096 Mar  7 05:53 shared
[2026-03-07 08:29:50] -rw-r--r--. 2 boinc boinc    597939 Mar  7 05:53 input.tar.gz
[2026-03-07 08:29:50] -rw-r--r--. 1 boinc boinc         0 Mar  7 05:53 boinc_lockfile
[2026-03-07 08:29:50] -rw-r--r--. 1 boinc boinc      2560 Mar  7 05:53 pandaJob.out
[2026-03-07 08:29:50] -rw-------. 1 boinc boinc    999155 Mar  7 05:53 agis_schedconf.cvmfs.json
[2026-03-07 08:29:50] -rw-------. 1 boinc boinc   1521291 Mar  7 05:53 agis_ddmendpoints.agis.ALL.json
[2026-03-07 08:29:50] -rw-------. 1 boinc boinc       443 Mar  7 05:53 workernode_map.json
[2026-03-07 08:29:50] drwx------. 5 boinc boinc      4096 Mar  7 05:53 pilot3
[2026-03-07 08:29:50] -rw-------. 1 boinc boinc 181519114 Mar  7 08:28 HITS.48955006._001011.pool.root.1
[2026-03-07 08:29:50] -rw-r--r--. 1 boinc boinc       530 Mar  7 08:28 boinc_task_state.xml
[2026-03-07 08:29:50] -rw-------. 1 boinc boinc        95 Mar  7 08:28 pilot_heartbeat.json
[2026-03-07 08:29:50] -rw-------. 1 boinc boinc      1027 Mar  7 08:28 memory_monitor_summary.json
[2026-03-07 08:29:50] -rw-------. 1 boinc boinc    327527 Mar  7 08:28 log.48955006._001011.job.log.tgz.1
[2026-03-07 08:29:50] -rw-------. 1 boinc boinc      6357 Mar  7 08:28 heartbeat.json
[2026-03-07 08:29:50] -rw-r--r--. 1 boinc boinc      8192 Mar  7 08:29 boinc_mmap_file
[2026-03-07 08:29:50] -rw-r--r--. 1 boinc boinc        27 Mar  7 08:29 wrapper_checkpoint.txt
[2026-03-07 08:29:50] -rw-------. 1 boinc boinc      5088 Mar  7 08:29 pilotlog.txt
[2026-03-07 08:29:50] -rw-------. 1 boinc boinc   1301669 Mar  7 08:29 log.48955006._001011.job.log.1
[2026-03-07 08:29:50] -rw-------. 1 boinc boinc       357 Mar  7 08:29 output.list
[2026-03-07 08:29:50] -rw-r--r--. 1 boinc boinc       620 Mar  7 08:29 runtime_log
[2026-03-07 08:29:50] -rw-------. 1 boinc boinc   1648640 Mar  7 08:29 result.tar.gz
[2026-03-07 08:29:50] -rw-r--r--. 1 boinc boinc      9204 Mar  7 08:29 runtime_log.err
[2026-03-07 08:29:50] -rw-------. 1 boinc boinc       663 Mar  7 08:29 EXCLDmTm2H9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmXjKLDmC6qNCo.diag
[2026-03-07 08:29:50] -rw-r--r--. 1 boinc boinc     20793 Mar  7 08:29 stderr.txt
[2026-03-07 08:29:50] HITS file was successfully produced:
[2026-03-07 08:29:50] -rw-------. 1 boinc boinc 181519114 Mar  7 08:28 shared/HITS.pool.root.1
[2026-03-07 08:29:50]  *** Contents of shared directory: ***
[2026-03-07 08:29:50] total 614912
[2026-03-07 08:29:50] -rw-r--r--. 2 boinc boinc 445870520 Mar  7 05:53 ATLAS.root_0
[2026-03-07 08:29:50] -rw-r--r--. 2 boinc boinc     15845 Mar  7 05:53 start_atlas.sh
[2026-03-07 08:29:50] -rw-r--r--. 2 boinc boinc    597939 Mar  7 05:53 input.tar.gz
[2026-03-07 08:29:50] -rw-------. 1 boinc boinc 181519114 Mar  7 08:28 HITS.pool.root.1
[2026-03-07 08:29:50] -rw-------. 1 boinc boinc   1648640 Mar  7 08:29 result.tar.gz
08:29:52 (1980238): run_atlas exited; CPU time 36233.897940
08:29:52 (1980238): called boinc_finish(0)

</stderr_txt>
]]>

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