Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:25:51 (3494383): wrapper (7.7.26015): starting
17:25:51 (3494383): wrapper: running run_atlas (--nthreads 4)
[2026-03-08 17:25:51] Arguments: --nthreads 4
[2026-03-08 17:25:51] Threads: 4
[2026-03-08 17:25:51] Checking for CVMFS
[2026-03-08 17:25:51] No cvmfs_config command found, will try listing directly
[2026-03-08 17:25:51] CVMFS is ok
[2026-03-08 17:25:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 17:25:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 17:25:51] Further information can be found at the LHC@home message board.
[2026-03-08 17:25:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 17:25:51] Checking for apptainer binary...
[2026-03-08 17:25:51] which: no apptainer in ((null))
[2026-03-08 17:25:51] apptainer is not installed, using version from CVMFS
[2026-03-08 17:25:51] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 17:25:52] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot20/slots/2/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2026-03-08 17:25:52] apptainer works
[2026-03-08 17:25:52] Set ATHENA_PROC_NUMBER=4
[2026-03-08 17:25:52] Set ATHENA_CORE_NUMBER=4
[2026-03-08 17:25:52] Starting ATLAS job with PandaID=7038500190
[2026-03-08 17:25:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot20/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 20:12:06]  *** The last 200 lines of the pilot log: ***
[2026-03-08 20:12:06] 2026-03-08 19:11:14,043 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-08 20:12:06] 2026-03-08 19:11:14,045 | INFO     | fitting pss+swap vs Time
[2026-03-08 20:12:06] 2026-03-08 19:11:14,046 | INFO     | sum of square deviations: 1318268896.493832
[2026-03-08 20:12:06] 2026-03-08 19:11:14,047 | INFO     | sum of deviations: -2572911649.2345695
[2026-03-08 20:12:06] 2026-03-08 19:11:14,047 | INFO     | mean x: 1772992155.506173
[2026-03-08 20:12:06] 2026-03-08 19:11:14,047 | INFO     | mean y: 2317432.734567901
[2026-03-08 20:12:06] 2026-03-08 19:11:14,047 | INFO     | intersect: 3462728417.956266
[2026-03-08 20:12:06] 2026-03-08 19:11:14,047 | INFO     | chi2: 2.2109861941815874
[2026-03-08 20:12:06] 2026-03-08 19:11:14,048 | INFO     | sum of square deviations: 1199932098.9936268
[2026-03-08 20:12:06] 2026-03-08 19:11:14,049 | INFO     | sum of deviations: 7350328138.477699
[2026-03-08 20:12:06] 2026-03-08 19:11:14,049 | INFO     | mean x: 1772992003.0063694
[2026-03-08 20:12:06] 2026-03-08 19:11:14,049 | INFO     | mean y: 2329901.5222929935
[2026-03-08 20:12:06] 2026-03-08 19:11:14,049 | INFO     | intersect: -10858345481.629425
[2026-03-08 20:12:06] 2026-03-08 19:11:14,049 | INFO     | chi2: 1.4524988548192386
[2026-03-08 20:12:06] 2026-03-08 19:11:14,049 | INFO     | current chi2=1.4524988548192386 (change=34.30538559482541 %)
[2026-03-08 20:12:06] 2026-03-08 19:11:14,050 | INFO     | sum of square deviations: 1088897763.99342
[2026-03-08 20:12:06] 2026-03-08 19:11:14,051 | INFO     | sum of deviations: 7182490651.052631
[2026-03-08 20:12:06] 2026-03-08 19:11:14,051 | INFO     | mean x: 1772991850.506579
[2026-03-08 20:12:06] 2026-03-08 19:11:14,051 | INFO     | mean y: 2329670.947368421
[2026-03-08 20:12:06] 2026-03-08 19:11:14,051 | INFO     | intersect: -11692521592.180912
[2026-03-08 20:12:06] 2026-03-08 19:11:14,051 | INFO     | chi2: 1.4537770640663277
[2026-03-08 20:12:06] 2026-03-08 19:11:14,051 | INFO     | current chi2=1.4537770640663277 (change=-0.08800070601420013 %)
[2026-03-08 20:12:06] 2026-03-08 19:11:14,051 | INFO     | right removable region: 151
[2026-03-08 20:12:06] 2026-03-08 19:11:14,052 | INFO     | sum of square deviations: 1199931488.9936268
[2026-03-08 20:12:06] 2026-03-08 19:11:14,052 | INFO     | sum of deviations: -23025466842.242035
[2026-03-08 20:12:06] 2026-03-08 19:11:14,053 | INFO     | mean x: 1772992308.0063694
[2026-03-08 20:12:06] 2026-03-08 19:11:14,053 | INFO     | mean y: 2343330.2420382164
[2026-03-08 20:12:06] 2026-03-08 19:11:14,053 | INFO     | intersect: 34024265393.300476
[2026-03-08 20:12:06] 2026-03-08 19:11:14,053 | INFO     | chi2: 0.8210159523146492
[2026-03-08 20:12:06] 2026-03-08 19:11:14,053 | INFO     | current chi2=0.8210159523146492 (change=62.86652741318658 %)
[2026-03-08 20:12:06] 2026-03-08 19:11:14,054 | INFO     | sum of square deviations: 1088905998.0
[2026-03-08 20:12:06] 2026-03-08 19:11:14,054 | INFO     | sum of deviations: -20089297048.5
[2026-03-08 20:12:06] 2026-03-08 19:11:14,054 | INFO     | mean x: 1772992460.5
[2026-03-08 20:12:06] 2026-03-08 19:11:14,055 | INFO     | mean y: 2339290.2960526315
[2026-03-08 20:12:06] 2026-03-08 19:11:14,055 | INFO     | intersect: 32712391644.82023
[2026-03-08 20:12:06] 2026-03-08 19:11:14,055 | INFO     | chi2: 0.8182723298309853
[2026-03-08 20:12:06] 2026-03-08 19:11:14,055 | INFO     | current chi2=0.8182723298309853 (change=0.33417407736462734 %)
[2026-03-08 20:12:06] 2026-03-08 19:11:14,055 | INFO     | left removable region: 20
[2026-03-08 20:12:06] 2026-03-08 19:11:14,055 | INFO     | sum of square deviations: 697054930.0
[2026-03-08 20:12:06] 2026-03-08 19:11:14,056 | INFO     | sum of deviations: -3891994956.0
[2026-03-08 20:12:06] 2026-03-08 19:11:14,056 | INFO     | mean x: 1772992430.0
[2026-03-08 20:12:06] 2026-03-08 19:11:14,056 | INFO     | mean y: 2343532.0687022903
[2026-03-08 20:12:06] 2026-03-08 19:11:14,056 | INFO     | intersect: 9901818161.114342
[2026-03-08 20:12:06] 2026-03-08 19:11:14,057 | INFO     | chi2: 0.01012096913864057
[2026-03-08 20:12:06] 2026-03-08 19:11:14,057 | INFO     | current memory leak: -5.58 B/s (using 131 data points, chi2=0.01)
[2026-03-08 20:12:06] 2026-03-08 19:11:14,057 | INFO     | could have reported an average CPU frequency of 2670 MHz (9 samples)
[2026-03-08 20:12:06] 2026-03-08 19:11:14,058 | INFO     | ..............................
[2026-03-08 20:12:06] 2026-03-08 19:11:14,058 | INFO     | . Timing measurements:
[2026-03-08 20:12:06] 2026-03-08 19:11:14,058 | INFO     | . get job = 0 s
[2026-03-08 20:12:06] 2026-03-08 19:11:14,058 | INFO     | . initial setup = 16 s
[2026-03-08 20:12:06] 2026-03-08 19:11:14,058 | INFO     | . payload setup = 19 s
[2026-03-08 20:12:06] 2026-03-08 19:11:14,058 | INFO     | . stage-in = 0 s
[2026-03-08 20:12:06] 2026-03-08 19:11:14,058 | INFO     | . payload execution = 9841 s
[2026-03-08 20:12:06] 2026-03-08 19:11:14,058 | INFO     | . stage-out = 0 s
[2026-03-08 20:12:06] 2026-03-08 19:11:14,058 | INFO     | . log creation = 0 s
[2026-03-08 20:12:06] 2026-03-08 19:11:14,058 | INFO     | ..............................
[2026-03-08 20:12:06] 2026-03-08 19:11:14,483 | INFO     | 
[2026-03-08 20:12:06] 2026-03-08 19:11:14,483 | INFO     | job summary report
[2026-03-08 20:12:06] 2026-03-08 19:11:14,484 | INFO     | --------------------------------------------------
[2026-03-08 20:12:06] 2026-03-08 19:11:14,484 | INFO     | PanDA job id: 7038500190
[2026-03-08 20:12:06] 2026-03-08 19:11:14,484 | INFO     | task id: 48955015
[2026-03-08 20:12:06] 2026-03-08 19:11:14,484 | INFO     | errors: (none)
[2026-03-08 20:12:06] 2026-03-08 19:11:14,484 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-08 20:12:06] 2026-03-08 19:11:14,484 | INFO     | pilot state: finished 
[2026-03-08 20:12:06] 2026-03-08 19:11:14,484 | INFO     | transexitcode: 0
[2026-03-08 20:12:06] 2026-03-08 19:11:14,484 | INFO     | exeerrorcode: 0
[2026-03-08 20:12:06] 2026-03-08 19:11:14,484 | INFO     | exeerrordiag: 
[2026-03-08 20:12:06] 2026-03-08 19:11:14,484 | INFO     | exitcode: 0
[2026-03-08 20:12:06] 2026-03-08 19:11:14,484 | INFO     | exitmsg: OK
[2026-03-08 20:12:06] 2026-03-08 19:11:14,484 | INFO     | cpuconsumptiontime: 35256 s
[2026-03-08 20:12:06] 2026-03-08 19:11:14,485 | INFO     | nevents: 400
[2026-03-08 20:12:06] 2026-03-08 19:11:14,485 | INFO     | neventsw: 0
[2026-03-08 20:12:06] 2026-03-08 19:11:14,485 | INFO     | pid: 3513321
[2026-03-08 20:12:06] 2026-03-08 19:11:14,485 | INFO     | pgrp: 3513321
[2026-03-08 20:12:06] 2026-03-08 19:11:14,485 | INFO     | corecount: 4
[2026-03-08 20:12:06] 2026-03-08 19:11:14,485 | INFO     | event service: False
[2026-03-08 20:12:06] 2026-03-08 19:11:14,485 | INFO     | sizes: {0: 2295385, 1: 2295846, 9865: 2324523, 9866: 2333543, 9867: 2333599, 9869: 2333857}
[2026-03-08 20:12:06] 2026-03-08 19:11:14,485 | INFO     | --------------------------------------------------
[2026-03-08 20:12:06] 2026-03-08 19:11:14,485 | INFO     | 
[2026-03-08 20:12:06] 2026-03-08 19:11:14,485 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot20/slots/2
[2026-03-08 20:12:06] 2026-03-08 19:11:14,524 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-08 20:12:06] 2026-03-08 19:11:14,524 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-08 20:12:06] 2026-03-08 19:11:14,524 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-08 20:12:06] 2026-03-08 19:11:14,524 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-08 20:12:06] 2026-03-08 19:11:14,524 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-08 20:12:06] 2026-03-08 19:11:14,524 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-08 20:12:06] 2026-03-08 19:11:14,524 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-08 20:12:06] 2026-03-08 19:11:14,525 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-08 20:12:06] 2026-03-08 19:11:14,525 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-08 20:12:06] 2026-03-08 19:11:14,525 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-08 20:12:06] 2026-03-08 19:11:14,525 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-08 20:12:06] 2026-03-08 19:11:14,525 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-08 20:12:06] 2026-03-08 19:11:14,525 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-08 20:12:06] 2026-03-08 19:11:14,525 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-08 20:12:06] 2026-03-08 19:11:14,525 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-08 20:12:06] 2026-03-08 19:11:14,525 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 20:12:06] 2026-03-08 19:11:14,526 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 20:12:06] 2026-03-08 19:11:14,526 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 20:12:06] 2026-03-08 19:11:14,526 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 20:12:06] 2026-03-08 19:11:14,526 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 20:12:06] 2026-03-08 19:11:14,526 | INFO     | job 7038500190 has completed (purged errors)
[2026-03-08 20:12:06] 2026-03-08 19:11:14,526 | INFO     | overall cleanup function is called
[2026-03-08 20:12:06] 2026-03-08 19:11:15,535 | INFO     | --- collectZombieJob: --- 10, [3513321]
[2026-03-08 20:12:06] 2026-03-08 19:11:15,536 | INFO     | zombie collector waiting for pid 3513321
[2026-03-08 20:12:06] 2026-03-08 19:11:15,536 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 20:12:06] 2026-03-08 19:11:15,536 | INFO     | collected zombie processes
[2026-03-08 20:12:06] 2026-03-08 19:11:15,536 | INFO     | will attempt to kill all subprocesses of pid=3513321
[2026-03-08 20:12:06] 2026-03-08 19:11:15,878 | INFO     | PID=3502869 has CPU usage=17.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-08 20:12:06] 2026-03-08 19:11:15,878 | INFO     | .. there are 26 such processes running
[2026-03-08 20:12:06] 2026-03-08 19:11:16,887 | INFO     | process IDs to be killed: [3513321] (in reverse order)
[2026-03-08 20:12:06] 2026-03-08 19:11:17,286 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 20:12:06] 2026-03-08 19:11:17,289 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 20:12:06] 2026-03-08 19:11:17,367 | INFO     | did not find any defunct processes belonging to 3513321
[2026-03-08 20:12:06] 2026-03-08 19:11:17,435 | INFO     | did not find any defunct processes belonging to 3513321
[2026-03-08 20:12:06] 2026-03-08 19:11:17,435 | INFO     | ready for new job
[2026-03-08 20:12:06] 2026-03-08 19:11:17,435 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 20:12:06] 2026-03-08 19:11:17,437 | INFO     | **************************************
[2026-03-08 20:12:06] 2026-03-08 19:11:17,438 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 20:12:06] 2026-03-08 19:11:17,438 | INFO     | **************************************
[2026-03-08 20:12:06] 2026-03-08 19:11:17,438 | INFO     | 
[2026-03-08 20:12:06] 2026-03-08 19:11:17,450 | INFO     | architecture information:
[2026-03-08 20:12:06] 2026-03-08 19:11:17,451 | INFO     | executing command: cat /etc/os-release
[2026-03-08 20:12:06] 2026-03-08 19:11:17,478 | INFO     | cat /etc/os-release:
[2026-03-08 20:12:06] NAME="CentOS Linux"
[2026-03-08 20:12:06] VERSION="7 (Core)"
[2026-03-08 20:12:06] ID="centos"
[2026-03-08 20:12:06] ID_LIKE="rhel fedora"
[2026-03-08 20:12:06] VERSION_ID="7"
[2026-03-08 20:12:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 20:12:06] ANSI_COLOR="0;31"
[2026-03-08 20:12:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 20:12:06] HOME_URL="https://www.centos.org/"
[2026-03-08 20:12:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 20:12:06] 
[2026-03-08 20:12:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 20:12:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 20:12:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 20:12:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 20:12:06] 
[2026-03-08 20:12:06] 2026-03-08 19:11:17,479 | INFO     | **************************************
[2026-03-08 20:12:06] 2026-03-08 19:11:17,761 | WARNING  | process 3513321 can no longer be monitored (due to stat problems) - aborting
[2026-03-08 20:12:06] 2026-03-08 19:11:17,981 | INFO     | executing command: df -mP /var/lib/boinc/var/slot20/slots/2
[2026-03-08 20:12:06] 2026-03-08 19:11:18,009 | INFO     | sufficient remaining disk space (43027267584 B)
[2026-03-08 20:12:06] 2026-03-08 19:11:18,010 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 20:12:06] 2026-03-08 19:11:18,010 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 20:12:06] 2026-03-08 19:11:18,010 | INFO     | update_server=False
[2026-03-08 20:12:06] 2026-03-08 19:11:18,010 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 20:12:06] 2026-03-08 19:11:18,021 | INFO     | all data control threads have been joined
[2026-03-08 20:12:06] 2026-03-08 19:11:18,065 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 20:12:06] 2026-03-08 19:11:18,408 | INFO     | using path: /var/lib/boinc/var/slot20/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 20:12:06] 2026-03-08 19:11:19,015 | INFO     | [job] retrieve thread has finished
[2026-03-08 20:12:06] 2026-03-08 19:11:19,026 | INFO     | [data] control thread has finished
[2026-03-08 20:12:06] 2026-03-08 19:11:19,134 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 20:12:06] 2026-03-08 19:11:19,162 | INFO     | [data] copytool_in thread has finished
[2026-03-08 20:12:06] 2026-03-08 19:11:19,166 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 20:12:06] 2026-03-08 19:11:19,206 | INFO     | [payload] validate_post thread has finished
[2026-03-08 20:12:06] 2026-03-08 19:11:19,215 | INFO     | all job control threads have been joined
[2026-03-08 20:12:06] 2026-03-08 19:11:19,287 | INFO     | number of running child processes to parent process 3513321: 1
[2026-03-08 20:12:06] 2026-03-08 19:11:19,288 | INFO     | maximum number of monitored processes: 6
[2026-03-08 20:12:06] 2026-03-08 19:11:19,288 | INFO     | aborting job monitoring since job object (job id=7038500190) has expired
[2026-03-08 20:12:06] 2026-03-08 19:11:19,288 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 20:12:06] 2026-03-08 19:11:19,288 | INFO     | will abort loop
[2026-03-08 20:12:06] 2026-03-08 19:11:19,295 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 20:12:06] 2026-03-08 19:11:19,514 | INFO     | all payload control threads have been joined
[2026-03-08 20:12:06] 2026-03-08 19:11:19,661 | INFO     | [payload] failed_post thread has finished
[2026-03-08 20:12:06] 2026-03-08 19:11:19,756 | INFO     | [job] validate thread has finished
[2026-03-08 20:12:06] 2026-03-08 19:11:19,860 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 20:12:06] 2026-03-08 19:11:20,104 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 20:12:06] 2026-03-08 19:11:20,171 | INFO     | [job] queue monitor thread has finished
[2026-03-08 20:12:06] 2026-03-08 19:11:20,220 | INFO     | [job] control thread has finished
[2026-03-08 20:12:06] 2026-03-08 19:11:20,293 | INFO     | [job] job monitor thread has finished
[2026-03-08 20:12:06] 2026-03-08 19:11:20,519 | INFO     | [payload] control thread has finished
[2026-03-08 20:12:06] 2026-03-08 19:11:21,139 | INFO     | [data] copytool_out thread has finished
[2026-03-08 20:12:06] 2026-03-08 19:11:22,071 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 20:12:06] 2026-03-08 19:11:26,566 [wrapper] supervise_pilot (15 min periods counter: 12)
[2026-03-08 20:12:06] 2026-03-08 19:11:28,915 | INFO     | job.realtimelogging is not enabled
[2026-03-08 20:12:06] 2026-03-08 19:11:29,920 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 20:12:06] 2026-03-08 19:11:48,865 | INFO     | PID=3502869 has CPU usage=13.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-08 20:12:06] 2026-03-08 19:11:48,866 | INFO     | .. there are 25 such processes running
[2026-03-08 20:12:06] 2026-03-08 19:11:48,866 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 20:12:06] 2026-03-08 19:11:48,867 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 20:12:06] 2026-03-08 19:11:48,867 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 20:12:06] 2026-03-08 19:11:59,574 | INFO     | [monitor] cgroup control has ended
[2026-03-08 20:12:06] 2026-03-08 19:12:01,157 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22498322171712)>', '<ExcThread(monitor, started 22498073896704)>']
[2026-03-08 20:12:06] 2026-03-08 19:12:01,927 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 20:12:06] 2026-03-08 19:12:01,930 | INFO     | [monitor] control thread has ended
[2026-03-08 20:12:06] 2026-03-08 19:12:06,182 | INFO     | all workflow threads have been joined
[2026-03-08 20:12:06] 2026-03-08 19:12:06,182 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 20:12:06] 2026-03-08 19:12:06,183 | INFO     | traces error code: 0
[2026-03-08 20:12:06] 2026-03-08 19:12:06,183 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 20:12:06] 2026-03-08 19:12:06,318 [wrapper] ==== pilot stdout END ====
[2026-03-08 20:12:06] 2026-03-08 19:12:06,321 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 20:12:06] 2026-03-08 19:12:06,327 [wrapper] pilotpid: 3502869
[2026-03-08 20:12:06] 2026-03-08 19:12:06,390 [wrapper] Pilot exit status: 0
[2026-03-08 20:12:06] 2026-03-08 19:12:06,441 [wrapper] pandaids: 7038500190
[2026-03-08 20:12:06] 2026-03-08 19:12:06,682 [wrapper] cleanup supervisor_pilot 3927241 3502870
[2026-03-08 20:12:06] 2026-03-08 19:12:06,688 [wrapper] Test setup, not cleaning
[2026-03-08 20:12:06] 2026-03-08 19:12:06,692 [wrapper] apfmon messages muted
[2026-03-08 20:12:06] 2026-03-08 19:12:06,696 [wrapper] ==== wrapper stdout END ====
[2026-03-08 20:12:06] 2026-03-08 19:12:06,700 [wrapper] ==== wrapper stderr END ====
[2026-03-08 20:12:06]  *** Error codes and diagnostics ***
[2026-03-08 20:12:06]     "exeErrorCode": 0,
[2026-03-08 20:12:06]     "exeErrorDiag": "",
[2026-03-08 20:12:06]     "pilotErrorCode": 0,
[2026-03-08 20:12:06]     "pilotErrorDiag": "",
[2026-03-08 20:12:06]  *** Listing of results directory ***
[2026-03-08 20:12:06] total 856200
[2026-03-08 20:12:06] -rw-r--r--. 1 boinc boinc    584627 Mar  4 14:58 pilot3.tar.gz
[2026-03-08 20:12:06] -rwx------. 1 boinc boinc     36322 Mar  4 14:58 runpilot2-wrapper.sh
[2026-03-08 20:12:06] -rw-r--r--. 1 boinc boinc      5111 Mar  4 14:58 queuedata.json
[2026-03-08 20:12:06] -rw-r--r--. 1 boinc boinc       100 Mar  8 12:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 20:12:06] -rwxr-xr-x. 1 boinc boinc      7986 Mar  8 12:29 run_atlas
[2026-03-08 20:12:06] -rw-r--r--. 1 boinc boinc       105 Mar  8 12:29 job.xml
[2026-03-08 20:12:06] -rw-------. 2 boinc boinc 248184832 Mar  8 13:08 copy_ODcUZO
[2026-03-08 20:12:06] -rw-r--r--. 2 boinc boinc 437171281 Mar  8 17:25 EVNT.46701403._002056.pool.root.1
[2026-03-08 20:12:06] -rw-r--r--. 1 boinc boinc      6617 Mar  8 17:25 init_data.xml
[2026-03-08 20:12:06] drwxrwx--x. 2 boinc boinc      4096 Mar  8 17:25 shared
[2026-03-08 20:12:06] -rw-r--r--. 2 boinc boinc    597954 Mar  8 17:25 input.tar.gz
[2026-03-08 20:12:06] -rw-r--r--. 2 boinc boinc     15845 Mar  8 17:25 start_atlas.sh
[2026-03-08 20:12:06] -rw-r--r--. 1 boinc boinc         0 Mar  8 17:25 boinc_lockfile
[2026-03-08 20:12:06] -rw-r--r--. 1 boinc boinc      2569 Mar  8 17:25 pandaJob.out
[2026-03-08 20:12:06] -rw-------. 1 boinc boinc    999212 Mar  8 17:26 agis_schedconf.cvmfs.json
[2026-03-08 20:12:06] -rw-------. 1 boinc boinc   1521291 Mar  8 17:26 agis_ddmendpoints.agis.ALL.json
[2026-03-08 20:12:06] -rw-------. 1 boinc boinc       443 Mar  8 17:26 workernode_map.json
[2026-03-08 20:12:06] drwx------. 5 boinc boinc      4096 Mar  8 17:26 pilot3
[2026-03-08 20:12:06] -rw-r--r--. 1 boinc boinc       531 Mar  8 20:10 boinc_task_state.xml
[2026-03-08 20:12:06] -rw-------. 1 boinc boinc 184051153 Mar  8 20:10 HITS.48955015._000681.pool.root.1
[2026-03-08 20:12:06] -rw-------. 1 boinc boinc      1023 Mar  8 20:11 memory_monitor_summary.json
[2026-03-08 20:12:06] -rw-------. 1 boinc boinc    360266 Mar  8 20:11 log.48955015._000681.job.log.tgz.1
[2026-03-08 20:12:06] -rw-------. 1 boinc boinc      6347 Mar  8 20:11 heartbeat.json
[2026-03-08 20:12:06] -rw-r--r--. 1 boinc boinc      8192 Mar  8 20:11 boinc_mmap_file
[2026-03-08 20:12:06] -rw-r--r--. 1 boinc boinc        27 Mar  8 20:11 wrapper_checkpoint.txt
[2026-03-08 20:12:06] -rw-------. 1 boinc boinc        95 Mar  8 20:11 pilot_heartbeat.json
[2026-03-08 20:12:06] -rw-------. 1 boinc boinc      5434 Mar  8 20:12 pilotlog.txt
[2026-03-08 20:12:06] -rw-------. 1 boinc boinc   1338842 Mar  8 20:12 log.48955015._000681.job.log.1
[2026-03-08 20:12:06] -rw-------. 1 boinc boinc       357 Mar  8 20:12 output.list
[2026-03-08 20:12:06] -rw-r--r--. 1 boinc boinc       620 Mar  8 20:12 runtime_log
[2026-03-08 20:12:06] -rw-------. 1 boinc boinc   1720320 Mar  8 20:12 result.tar.gz
[2026-03-08 20:12:06] -rw-r--r--. 1 boinc boinc      9204 Mar  8 20:12 runtime_log.err
[2026-03-08 20:12:06] -rw-------. 1 boinc boinc       663 Mar  8 20:12 nlFKDmMv1H9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmTdKLDmePNHem.diag
[2026-03-08 20:12:06] -rw-r--r--. 1 boinc boinc     21009 Mar  8 20:12 stderr.txt
[2026-03-08 20:12:06] HITS file was successfully produced:
[2026-03-08 20:12:06] -rw-------. 1 boinc boinc 184051153 Mar  8 20:10 shared/HITS.pool.root.1
[2026-03-08 20:12:06]  *** Contents of shared directory: ***
[2026-03-08 20:12:06] total 851328
[2026-03-08 20:12:06] -rw-------. 2 boinc boinc 248184832 Mar  8 13:08 copy_ODcUZO
[2026-03-08 20:12:06] -rw-r--r--. 2 boinc boinc 437171281 Mar  8 17:25 ATLAS.root_0
[2026-03-08 20:12:06] -rw-r--r--. 2 boinc boinc    597954 Mar  8 17:25 input.tar.gz
[2026-03-08 20:12:06] -rw-r--r--. 2 boinc boinc     15845 Mar  8 17:25 start_atlas.sh
[2026-03-08 20:12:06] -rw-------. 1 boinc boinc 184051153 Mar  8 20:10 HITS.pool.root.1
[2026-03-08 20:12:06] -rw-------. 1 boinc boinc   1720320 Mar  8 20:12 result.tar.gz
20:12:08 (3494383): run_atlas exited; CPU time 35846.085250
20:12:08 (3494383): called boinc_finish(0)

</stderr_txt>
]]>

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